Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005112 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 0.0e+00 1652.9 879 100.0
CSS0004157 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 0.0e+00 1595.9 859 99.1
Actinidia22550 Actinidia chinensis HOM05D006788 ORTHO05D008265 7.6e-265 917.5 884 62.2
Dinv36075 Davidia involucrata HOM05D006788 ORTHO05D008265 1.8e-261 906.4 909 60.3
Dinv39415 Davidia involucrata HOM05D006788 ORTHO05D008265 1.9e-239 833.2 891 57.8
vmacro21636 Vaccinium macrocarpon HOM05D006788 ORTHO05D008265 1.2e-222 777.3 889 56.4
Rhsim06G0034200 Rhododendron simsii HOM05D006788 ORTHO05D008265 5.0e-216 755.4 887 55.4
Hma1.2p1_0203F.1_g086400 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 1.6e-190 670.6 859 50.6
QL02p008476 Quercus lobata HOM05D006788 ORTHO05D008265 9.2e-186 654.8 886 48.8
Actinidia15324 Actinidia chinensis HOM05D006788 ORTHO05D008265 2.1e-174 617.1 818 50.4
CiPaw.15G077700 Carya illinoinensis HOM05D006788 ORTHO05D008265 4.6e-169 599.4 890 47.2
Duzib093G0366 Durio zibethinus HOM05D006788 ORTHO05D008265 5.3e-157 559.3 894 44.4
TAR381G0400 Trochodendron aralioides HOM05D006788 ORTHO05D008265 9.9e-156 555.1 823 47.8
Thecc.08G025800 Theobroma cacao HOM05D006788 ORTHO05D008265 1.1e-151 541.6 911 43.2
Potri.002G261700 Populus trichocarpa HOM05D006788 ORTHO05D008265 2.1e-150 537.3 906 43.7
Cfa018147 Carpinus fangiana HOM05D006788 ORTHO05D008265 5.3e-149 532.7 883 45.2
Duzib116G0613 Durio zibethinus HOM05D006788 ORTHO05D008265 9.0e-149 531.9 896 44.2
Gohir.A06G010500 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.5e-148 531.2 910 43.0
Gorai.010G010600 Gossypium raimondii HOM05D006788 ORTHO05D008265 2.0e-148 530.8 879 44.1
Gohir.D06G007900 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.4e-146 524.6 885 43.6
Haze_17976 Corylus avellana HOM05D006788 ORTHO05D008265 2.1e-145 520.8 830 46.4
COL.COLO4_26325 Corchorus olitorius HOM05D006788 ORTHO05D008265 3.0e-144 516.9 910 41.9
Potri.014G185300 Populus trichocarpa HOM05D006788 ORTHO05D008265 9.6e-143 511.9 904 42.1
TWI36G0908 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 2.8e-142 510.4 888 42.2
Manes.05G160500 Manihot esculenta HOM05D006788 ORTHO05D008265 2.5e-135 487.3 889 41.7
TWI56G0676 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 4.3e-135 486.5 909 40.8
Lj4A785T32 Lonicera japonica HOM05D006788 ORTHO05D008265 9.6e-135 485.3 853 42.1
Cpa.g.sc36.71 Carica papaya HOM05D006788 ORTHO05D008265 2.1e-134 484.2 848 42.0
Sabra14G0142000 Salix brachista HOM05D006788 ORTHO05D008265 4.8e-134 483.0 882 41.2
Nitab4.5_0009150g0020 Nicotiana tabacum HOM05D006788 ORTHO05D008265 1.6e-129 468.0 916 39.7
Prupe.1G380200 Prunus persica HOM05D006788 ORTHO05D008265 3.5e-129 466.8 876 41.3
Peaxi162Scf00417g01019 Petunia axillaris HOM05D006788 ORTHO05D008265 5.7e-127 459.5 805 41.9
Ciclev10018661m.g Citrus clementina HOM05D006788 ORTHO05D008265 7.4e-127 459.1 862 41.2
Nitab4.5_0000110g0630 Nicotiana tabacum HOM05D006788 ORTHO05D008265 1.3e-126 458.4 894 40.0
Manes.18G027700 Manihot esculenta HOM05D006788 ORTHO05D008265 9.4e-122 442.2 721 44.4
Cc10_g02940 Coffea canephora HOM05D006788 ORTHO05D008265 6.5e-115 419.5 891 37.0
PGSC0003DMG400005137 Solanum tuberosum HOM05D006788 ORTHO05D008265 1.2e-113 415.2 806 39.6
Sopen04g033860 Solanum pennellii HOM05D006788 ORTHO05D008265 7.4e-111 406.0 900 37.2
Solyc04g080270.4 Solanum lycopersicum HOM05D006788 ORTHO05D008265 9.7e-111 405.6 900 37.0
MD08G1035200 Malus domestica HOM05D006788 ORTHO05D008265 4.8e-110 403.3 873 37.3
DCAR_008759 Daucus carota HOM05D006788 ORTHO05D008265 4.1e-109 400.2 853 37.2
Nn5g29585 Nelumbo nucifera HOM05D006788 ORTHO05D008265 1.7e-107 394.8 889 36.9
RcHm_v2.0_Chr5g0052261 Rosa chinensis HOM05D006788 ORTHO05D008265 6.7e-104 382.9 881 37.3
GSVIVG01009701001 Vitis vinifera HOM05D006788 ORTHO05D008265 2.0e-103 381.3 879 37.8
Gorai.009G202800 Gossypium raimondii HOM05D006788 ORTHO05D008265 5.7e-103 379.8 901 37.8
FvH4_2g39870 Fragaria vesca HOM05D006788 ORTHO05D008265 1.6e-100 371.7 904 35.8
Eucgr.F01564 Eucalyptus grandis HOM05D006788 ORTHO05D008265 2.7e-97 360.9 851 37.7
Gohir.A05G194600 Gossypium hirsutum HOM05D006788 ORTHO05D008265 6.1e-97 359.8 911 36.9
Atru.chr13.488 Acer truncatum HOM05D006788 ORTHO05D008265 1.1e-93 349.0 460 49.6
MD15G1031800 Malus domestica HOM05D006788 ORTHO05D008265 7.0e-93 346.3 879 35.9
FAN27G2706 Fragaria x ananassa HOM05D006788 ORTHO05D008265 3.5e-92 344.0 884 34.8
FAN20G0511 Fragaria x ananassa HOM05D006788 ORTHO05D008265 1.1e-90 339.0 887 35.6
Aqoxy5G01647 Aquilegia oxysepala HOM05D006788 ORTHO05D008265 3.7e-86 323.9 836 36.1
Sed0005360 Sechium edule HOM05D006788 ORTHO05D008265 1.8e-85 321.6 868 34.8
CANSAT25G0680 Cannabis sativa HOM05D006788 ORTHO05D008265 2.4e-85 321.2 828 35.1
Glyma.05G248700 Glycine max HOM05D006788 ORTHO05D008265 4.1e-85 320.5 873 34.8
ClCG05G019050 Citrullus lanatus HOM05D006788 ORTHO05D008265 1.6e-84 318.5 897 34.7
CsaV3_3G045060 Cucumis sativus L. HOM05D006788 ORTHO05D008265 8.6e-83 312.8 922 34.5
Glyma.08G057300 Glycine max HOM05D006788 ORTHO05D008265 6.1e-81 306.6 874 34.6
LjContig00484g0028229 Lotus japonicus HOM05D006788 ORTHO05D008265 8.0e-81 306.2 890 33.5
Phvul.002G333000 Phaseolus vulgaris HOM05D006788 ORTHO05D008265 8.0e-81 306.2 880 33.9
VMungo0251G0495 Vigna mungo HOM05D006788 ORTHO05D008265 1.8e-80 305.1 876 34.7
MSTRG.24293 Avicennia marina HOM05D006788 ORTHO05D008265 6.8e-80 303.1 790 34.1
MELO3C003844.2 Cucumis melo HOM05D006788 ORTHO05D008265 1.1e-77 295.8 919 33.3
MBI16_g34334_MAGBIO Magnolia biondii HOM05D006788 ORTHO05D008265 1.4e-77 295.4 802 34.9
AUR62007432 Chenopodium quinoa HOM05D006788 ORTHO05D008265 1.2e-76 292.4 920 32.5
SGA_v2.0_scaffold326G48711 Striga asiatica HOM05D006788 ORTHO05D008265 1.5e-74 285.4 868 31.9
AUR62027306 Chenopodium quinoa HOM05D006788 ORTHO05D008265 7.3e-74 283.1 923 32.1
Gohir.D05G197766 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.4e-72 278.9 755 35.6
Duzib041G0403 Durio zibethinus HOM05D006788 ORTHO05D008265 1.5e-71 275.4 363 49.0
PSO081G0175 Papaver somniferum HOM05D006788 ORTHO05D008265 3.7e-70 270.8 892 32.2
THA.LOC104798640 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 3.2e-69 267.7 820 32.7
Migut.N00496 Erythranthe guttata HOM05D006788 ORTHO05D008265 7.0e-69 266.5 777 32.8
PSO700G0053 Papaver somniferum HOM05D006788 ORTHO05D008265 2.5e-66 258.1 746 33.8
Lalb_Chr05g0221391 Lupinus albus HOM05D006788 ORTHO05D008265 1.2e-65 255.8 831 32.6
Lsat_1_v5_gn_5_29160 Lactuca sativa HOM05D006788 ORTHO05D008265 9.8e-63 246.1 704 33.0
PGR083G0386 Punica granatum HOM05D006788 ORTHO05D008265 7.1e-61 240.0 769 32.4
Ah.08g219690 Amaranthus hybridus HOM05D006788 ORTHO05D008265 9.2e-61 239.6 787 34.2
arahy.Tifrunner.gnm1.ann1.HV2TRI Arachis hypogaea HOM05D006788 ORTHO05D008265 7.8e-60 236.5 920 31.2
ECA246G4903 Erigeron canadensis HOM05D006788 ORTHO05D008265 1.3e-59 235.7 416 40.4
arahy.Tifrunner.gnm1.ann1.50JV45 Arachis hypogaea HOM05D006788 ORTHO05D008265 1.7e-59 235.3 919 30.7
Gorai.005G107800 Gossypium raimondii HOM05D006788 ORTHO05D008265 1.7e-59 235.3 386 45.6
AT5G42710 Arabidopsis thaliana HOM05D006788 ORTHO05D008265 4.3e-50 204.1 472 36.0
Sp2g07230 Schrenkiella parvula HOM05D006788 ORTHO05D008265 1.5e-47 195.7 594 32.2
HanXRQChr05g0151911 Helianthus annuus HOM05D006788 ORTHO05D008265 7.6e-47 193.4 801 28.5
AL8G18450 Arabidopsis lyrata HOM05D006788 ORTHO05D008265 1.3e-46 192.6 678 31.3
Thhalv10003405m.g Eutrema salsugineum HOM05D006788 ORTHO05D008265 2.4e-45 188.3 628 30.6
Gohir.A03G078650 Gossypium hirsutum HOM05D006788 ORTHO05D008265 7.1e-45 186.8 542 33.8
CARHR181620 Cardamine hirsuta HOM05D006788 ORTHO05D008265 2.3e-43 181.8 586 31.4
Sc15g0006920 Simmondsia chinensis HOM05D000020 ORTHO05D008265 1.5e-42 179.1 773 28.3
TPR.G1461 Trifolium pratense HOM05D006788 ORTHO05D008265 5.6e-42 177.2 415 38.1
BolC9t55417H Brassica oleracea HOM05D006788 ORTHO05D008265 7.3e-42 176.8 587 30.8
Carub.0008s0625 Capsella rubella HOM05D006788 ORTHO05D008265 7.3e-42 176.8 690 30.4
C09p25220 Brassica napus HOM05D006788 ORTHO05D008265 3.6e-41 174.5 586 30.5
BraA09t37598Z Brassica rapa HOM05D006788 ORTHO05D008265 2.9e-38 164.9 671 28.9
BcaC04g21980 Brassica carinata HOM05D006788 ORTHO05D008265 3.8e-38 164.5 671 28.8
A09p19890 Brassica napus HOM05D006788 ORTHO05D008265 4.9e-38 164.1 672 29.0
Medtr8g107730 Medicago truncatula HOM05D006788 ORTHO05D008265 9.3e-37 159.8 597 31.8
Psat7g000480 Pisum sativum HOM05D006788 ORTHO05D008265 4.8e-33 147.5 667 29.4
Aa31LG9G12770 Aethionema arabicum HOM05D006788 ORTHO05D008265 4.0e-32 144.4 640 27.7
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 3.4e-31 141.4 350 35.4
BcaB07g31060 Brassica carinata HOM05D006788 ORTHO05D008265 1.3e-30 139.4 687 27.2
Hma1.2p1_2195F.1_g316830 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 4.0e-24 117.9 251 37.8
Atru.chr13.489 Acer truncatum HOM05D006788 ORTHO05D008265 9.0e-24 116.7 321 34.9
ATR0733G187 Amborella trichopoda HOM05D006788 ORTHO05D008265 2.0e-23 115.5 910 25.5
Os03g0775700 Oryza sativa ssp. japonica HOM05D006788 ORTHO05D008265 5.1e-19 100.9 390 30.8
THA.LOC104813209 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 5.1e-19 100.9 688 26.0
HPP92_019509 Vanilla planifolia HOM05D006788 ORTHO05D008265 5.7e-18 97.4 869 25.4
Oeu064588.2 Olea europaea HOM05D005593 ORTHO05D006515 7.4e-18 97.1 245 33.1
Aqoxy7G01612 Aquilegia oxysepala HOM05D005593 ORTHO05D006515 6.9e-16 90.5 212 35.4
ATR0315G161 Amborella trichopoda HOM05D005593 ORTHO05D006515 1.2e-15 89.7 256 32.8
Cpa.g.sc23.90 Carica papaya HOM05D005593 ORTHO05D006515 3.4e-15 88.2 238 31.1
MSTRG.19579 Avicennia marina HOM05D005593 ORTHO05D006515 1.0e-14 86.7 229 35.4
Dinv41619 Davidia involucrata HOM05D005593 ORTHO05D006515 2.2e-14 85.5 213 33.3
QL02p043456 Quercus lobata HOM05D005593 ORTHO05D006515 2.2e-14 85.5 228 33.8
Manes.16G114300 Manihot esculenta HOM05D005593 ORTHO05D006515 5.0e-14 84.3 233 33.0
unitig_578.g16070 Utricularia gibba HOM05D006788 ORTHO05D008265 8.5e-14 83.6 511 24.7
Dinv36648 Davidia involucrata HOM05D005593 ORTHO05D006515 1.1e-13 83.2 233 32.2
CiPaw.04G162900 Carya illinoinensis HOM05D005593 ORTHO05D006515 3.2e-13 81.6 226 32.7
Dinv11466 Davidia involucrata HOM05D005593 ORTHO05D006515 3.2e-13 81.6 238 30.7
Nn2g11698 Nelumbo nucifera HOM05D005593 ORTHO05D006515 9.3e-13 80.1 247 31.2
Peaxi162Scf00231g00216 Petunia axillaris HOM05D005593 ORTHO05D006515 2.7e-12 78.6 269 28.3
Duzib187G0236 Durio zibethinus HOM05D005593 ORTHO05D006515 3.6e-12 78.2 251 29.1
vmacro20713 Vaccinium macrocarpon HOM05D005593 ORTHO05D006515 3.6e-12 78.2 155 34.8
Thecc.09G108000 Theobroma cacao HOM05D005593 ORTHO05D006515 4.6e-12 77.8 249 29.7
CSS0003686 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 6.1e-12 77.4 146 39.0
CSS0038657 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 6.1e-12 77.4 146 39.0
Sabra18G0070100 Salix brachista HOM05D005593 ORTHO05D006515 6.1e-12 77.4 223 32.7
CDE04G2912 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 7.9e-12 77.0 303 28.7
Psat1g043640 Pisum sativum HOM05D005593 ORTHO05D006515 7.9e-12 77.0 207 30.4
TWI34G0806 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 7.9e-12 77.0 224 30.8
CiPaw.03G229900 Carya illinoinensis HOM05D005593 ORTHO05D006515 1.0e-11 76.6 221 30.3
PGSC0003DMG400015636 Solanum tuberosum HOM05D005593 ORTHO05D006515 1.8e-11 75.9 216 31.5
Prupe.7G233100 Prunus persica HOM05D005593 ORTHO05D006515 2.3e-11 75.5 256 30.5
Nn3g18070 Nelumbo nucifera HOM05D005593 ORTHO05D006515 3.0e-11 75.1 270 30.0
Rhsim01G0098000 Rhododendron simsii HOM05D005593 ORTHO05D006515 3.9e-11 74.7 156 35.3
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 3.9e-11 74.7 160 35.0
Haze_25764 Corylus avellana HOM05D005593 ORTHO05D006515 5.1e-11 74.3 213 32.9
TWI63G0748 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 6.7e-11 73.9 226 30.1
Lj7E653T1 Lonicera japonica HOM05D005593 ORTHO05D006515 8.7e-11 73.6 71 49.3
Manes.03G022200 Manihot esculenta HOM05D005593 ORTHO05D006515 8.7e-11 73.6 236 29.2
Lj2g0010013 Lotus japonicus HOM05D005593 ORTHO05D006515 1.1e-10 73.2 223 29.6
Zm00001eb213730 Zea mays HOM05D006788 ORTHO05D008265 1.5e-10 72.8 804 24.9
Ciclev10007444m.g Citrus clementina HOM05D005593 ORTHO05D006515 4.3e-10 71.2 283 27.2
Gohir.D06G062400 Gossypium hirsutum HOM05D005593 ORTHO05D006515 4.3e-10 71.2 221 29.4
Gorai.010G072700 Gossypium raimondii HOM05D005593 ORTHO05D006515 4.3e-10 71.2 221 29.0
Nitab4.5_0013892g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 4.3e-10 71.2 253 28.1
Sopen07g016890 Solanum pennellii HOM05D005593 ORTHO05D006515 5.7e-10 70.9 238 29.4
Cc06_g09850 Coffea canephora HOM05D005593 ORTHO05D006515 7.4e-10 70.5 246 30.5
DCAR_012067 Daucus carota HOM05D005593 ORTHO05D006515 7.4e-10 70.5 283 29.7
Ca_25537_v3 Cicer arietinum L. HOM05D005593 ORTHO05D006515 9.7e-10 70.1 215 30.2
Phvul.004G165100 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 9.7e-10 70.1 214 31.3
Gohir.A06G063700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 1.3e-09 69.7 221 28.1
TPR.G10037 Trifolium pratense HOM05D005593 ORTHO05D006515 1.3e-09 69.7 274 24.8
Glyma.09G192000 Glycine max HOM05D005593 ORTHO05D006515 2.2e-09 68.9 201 31.8
Nitab4.5_0000097g0120 Nicotiana tabacum HOM05D005593 ORTHO05D006515 2.2e-09 68.9 277 28.2
Solyc07g032710.4 Solanum lycopersicum HOM05D005593 ORTHO05D006515 2.2e-09 68.9 216 30.6
Gohir.D07G006300 Gossypium hirsutum HOM05D005593 ORTHO05D006515 2.8e-09 68.6 213 30.0
Gorai.001G005900 Gossypium raimondii HOM05D005593 ORTHO05D006515 2.8e-09 68.6 213 30.0
Lalb_Chr22g0352731 Lupinus albus HOM05D005593 ORTHO05D006515 2.8e-09 68.6 205 30.7
MD15G1182400 Malus domestica HOM05D005593 ORTHO05D006515 2.8e-09 68.6 220 30.9
Duzib150G1551 Durio zibethinus HOM05D005593 ORTHO05D006515 3.7e-09 68.2 240 29.6
Sed0026051 Sechium edule HOM05D005593 ORTHO05D006515 3.7e-09 68.2 98 39.8
Medtr6g087760 Medicago truncatula HOM05D005593 ORTHO05D006515 4.8e-09 67.8 219 29.2
TAR383G0262 Trochodendron aralioides HOM05D005593 ORTHO05D006515 4.8e-09 67.8 205 33.7
MBI04_g19171_MAGBIO Magnolia biondii HOM05D005593 ORTHO05D006515 6.3e-09 67.4 108 38.0
VMungo0464G1894 Vigna mungo HOM05D005593 ORTHO05D006515 6.3e-09 67.4 206 30.6
ECA234G4430 Erigeron canadensis HOM05D005593 ORTHO05D006515 1.8e-08 65.9 287 29.6
Lalb_Chr14g0371581 Lupinus albus HOM05D005593 ORTHO05D006515 2.4e-08 65.5 226 30.1
CANSAT56G2752 Cannabis sativa HOM05D005593 ORTHO05D006515 4.1e-08 64.7 515 23.1
MELO3C004562.2 Cucumis melo HOM05D005593 ORTHO05D006515 4.1e-08 64.7 235 29.8
arahy.Tifrunner.gnm1.ann1.F0KYD5 Arachis hypogaea HOM05D005593 ORTHO05D006515 5.3e-08 64.3 200 30.0
Glyma.07G084900 Glycine max HOM05D005593 ORTHO05D006515 6.9e-08 63.9 253 26.1
CsaV3_2G002210 Cucumis sativus L. HOM05D005593 ORTHO05D006515 1.2e-07 63.2 277 28.2
Dinv15201 Davidia involucrata HOM05D006788 ORTHO05D008265 1.5e-07 62.8 59 54.2
Sed0018005 Sechium edule HOM05D005593 ORTHO05D006515 3.4e-07 61.6 218 26.6
PSO832G1383 Papaver somniferum HOM05D005593 ORTHO05D006515 4.5e-07 61.2 107 36.4
FAN23G2457 Fragaria x ananassa HOM05D005593 ORTHO05D006515 5.9e-07 60.8 252 28.6
Aa31sc586G30 Aethionema arabicum HOM05D005593 ORTHO05D006515 1.0e-06 60.1 236 28.8
PSO782G3244 Papaver somniferum HOM05D005593 ORTHO05D006515 1.0e-06 60.1 107 36.4
BolC7t41614H Brassica oleracea HOM05D005593 ORTHO05D006515 3.8e-06 58.2 226 29.6
Lsat_1_v5_gn_5_103481 Lactuca sativa HOM05D005593 ORTHO05D006515 6.5e-06 57.4 403 25.8
AT3G24630 Arabidopsis thaliana HOM05D005593 ORTHO05D006515 8.5e-06 57.0 85 42.4


User provided reference genes

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