Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 3.2e-136 488.4 248 100.0
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 1.2e-135 486.5 248 99.6
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 2.3e-110 402.5 249 85.5
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 6.3e-108 394.4 251 84.5
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 5.9e-106 387.9 249 81.9
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.3e-105 386.7 249 81.5
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 3.8e-105 385.2 249 81.1
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 8.5e-105 384.0 249 79.5
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 1.1e-104 383.6 249 80.7
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 4.2e-104 381.7 250 80.4
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 4.2e-104 381.7 250 80.4
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 7.2e-104 380.9 250 80.0
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 9.4e-104 380.6 248 79.8
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 1.2e-103 380.2 249 79.9
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.2e-103 380.2 250 80.4
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 2.1e-103 379.4 250 80.0
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 3.6e-103 378.6 250 79.2
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 1.2e-101 373.6 249 78.3
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 4.4e-101 371.7 249 76.7
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 5.7e-101 371.3 248 79.0
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 7.5e-101 370.9 249 76.7
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 1.3e-100 370.2 249 78.3
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 1.7e-100 369.8 249 79.5
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 4.8e-100 368.2 249 76.7
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 8.3e-100 367.5 249 78.3
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.4e-99 365.9 249 75.9
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 3.1e-99 365.5 249 75.9
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 5.4e-99 364.8 250 77.2
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 9.1e-99 364.0 267 73.4
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 1.6e-98 363.2 250 76.8
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 1.6e-98 363.2 249 75.9
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 2.7e-98 362.5 254 76.4
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 7.7e-98 360.9 251 76.1
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 1.3e-97 360.1 252 75.8
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 1.3e-97 360.1 248 77.8
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.3e-97 360.1 249 77.9
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 1.7e-97 359.8 251 77.3
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 1.7e-97 359.8 251 75.7
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 2.9e-97 359.0 249 75.9
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 3.8e-97 358.6 250 76.8
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 3.8e-97 358.6 220 83.2
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 3.8e-97 358.6 252 77.8
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 3.8e-97 358.6 249 77.5
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 6.6e-97 357.8 252 76.6
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 2.5e-96 355.9 249 75.1
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 7.2e-96 354.4 249 75.5
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 9.5e-96 354.0 250 74.8
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 9.5e-96 354.0 247 74.9
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.6e-95 353.2 250 76.4
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 2.1e-95 352.8 250 76.0
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 2.8e-95 352.4 255 73.3
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 4.7e-95 351.7 243 75.3
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 6.1e-95 351.3 249 74.7
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 1.0e-94 350.5 249 74.7
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 4.0e-94 348.6 252 75.0
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 4.0e-94 348.6 256 73.8
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 8.9e-94 347.4 253 72.7
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 1.5e-93 346.7 249 73.5
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 2.6e-93 345.9 250 74.8
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 7.5e-93 344.4 248 72.6
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 9.8e-93 344.0 250 74.4
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 9.8e-93 344.0 243 77.4
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 9.8e-93 344.0 251 74.5
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 1.7e-92 343.2 258 73.3
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 2.2e-92 342.8 252 72.6
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 2.2e-92 342.8 250 73.6
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 3.7e-92 342.0 251 72.9
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 5.4e-91 338.2 238 76.5
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 2.0e-90 336.3 251 71.3
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 3.5e-90 335.5 250 74.4
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 4.5e-90 335.1 249 71.5
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 4.5e-90 335.1 249 71.9
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 1.0e-89 334.0 255 73.3
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.3e-89 332.8 249 71.5
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 2.9e-89 332.4 253 69.6
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 3.8e-89 332.0 246 73.2
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.8e-89 332.0 249 71.5
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.8e-89 332.0 249 71.5
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.8e-89 332.0 249 71.5
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 5.0e-89 331.6 249 71.5
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 5.0e-89 331.6 234 76.5
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 6.6e-89 331.3 253 69.2
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 2.5e-88 329.3 218 77.1
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.3e-88 328.9 248 70.2
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 4.3e-88 328.6 241 75.5
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 5.6e-88 328.2 221 77.8
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 7.3e-88 327.8 232 73.7
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 7.3e-88 327.8 230 76.1
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 1.2e-87 327.0 243 70.0
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 3.6e-87 325.5 232 73.7
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 3.6e-87 325.5 244 68.9
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 4.7e-87 325.1 243 67.9
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 8.0e-87 324.3 313 60.1
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.0e-86 323.9 203 79.3
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 1.8e-86 323.2 239 74.5
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 1.8e-86 323.2 243 68.7
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 2.3e-86 322.8 243 67.5
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 2.3e-86 322.8 243 67.9
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 2.3e-86 322.8 247 73.3
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 3.1e-86 322.4 247 67.2
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 4.0e-86 322.0 239 72.8
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 4.0e-86 322.0 248 69.4
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 1.2e-85 320.5 244 68.0
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 1.2e-85 320.5 244 68.4
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 1.5e-85 320.1 244 67.6
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 2.0e-85 319.7 243 67.1
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 3.4e-85 318.9 252 70.2
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 7.5e-85 317.8 243 68.3
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 7.5e-85 317.8 244 67.2
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 9.8e-85 317.4 244 67.2
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 1.3e-84 317.0 253 68.0
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 1.7e-84 316.6 244 68.0
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 1.7e-84 316.6 244 67.6
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 6.4e-84 314.7 321 57.9
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 1.1e-83 313.9 258 68.2
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 1.9e-83 313.2 243 67.1
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 1.9e-83 313.2 236 72.5
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 3.2e-83 312.4 243 67.1
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 4.1e-83 312.0 243 66.7
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 9.2e-83 310.8 244 66.0
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 9.2e-83 310.8 246 65.4
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 2.3e-81 306.2 243 68.3
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 6.6e-81 304.7 247 66.0
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 1.5e-80 303.5 319 56.4
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 1.9e-80 303.1 245 65.3
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 1.9e-80 303.1 245 65.3
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 1.9e-80 303.1 245 65.3
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 5.6e-80 301.6 249 65.1
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.1e-79 299.7 228 69.7
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 8.0e-79 297.7 243 64.2
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 2.3e-78 296.2 252 63.9
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 7.0e-75 284.6 260 60.8
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 6.2e-71 271.6 246 60.6
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 5.2e-70 268.5 152 86.8
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.9e-67 260.0 229 62.0
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 2.1e-66 256.5 247 58.3
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 4.6e-66 255.4 233 62.7
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 6.0e-66 255.0 238 59.7
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 5.1e-65 251.9 245 55.5
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 1.5e-64 250.4 136 88.2
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 5.6e-64 248.4 147 80.3
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 2.6e-61 239.6 256 54.7
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 2.1e-58 229.9 245 52.7
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 3.0e-57 226.1 217 58.5
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.5e-56 223.0 169 68.0
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 7.3e-56 221.5 169 67.5
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 6.0e-50 201.8 274 47.4
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 1.5e-45 187.2 288 41.7
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.0e-45 186.8 189 56.1
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 2.6e-45 186.4 121 74.4
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 1.4e-43 180.6 117 76.9
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.4e-38 164.1 130 73.1
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 2.7e-34 149.8 261 37.5
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 4.6e-34 149.1 133 67.7
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 1.0e-33 147.9 275 38.2
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 1.9e-27 127.1 95 65.3
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 5.5e-27 125.6 99 72.7
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 1.0e-25 121.3 69 84.1
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 1.8e-25 120.6 91 60.4
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 1.4e-22 110.9 105 60.0
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 4.1e-22 109.4 75 76.0
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 1.7e-20 104.0 75 72.0
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 2.7e-18 96.7 121 50.4
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 1.0e-17 94.7 110 36.4
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 2.5e-16 90.1 90 45.6
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 2.2e-15 87.0 93 53.8
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 1.1e-11 74.7 81 50.6
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 1.1e-11 74.7 133 43.6
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 7.2e-11 72.0 101 50.5
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 1.6e-10 70.9 148 34.5


User provided reference genes

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