Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005102 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 3.7e-110 401.7 229 100.0
CSS0046256 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 1.1e-106 390.2 229 98.3
Hma1.2p1_0733F.1_g210180 Hydrangea macrophylla HOM05D007731 ORTHO05D008483 8.5e-59 231.1 244 60.7
Lj4P799T27 Lonicera japonica HOM05D007731 ORTHO05D008483 3.3e-50 202.6 282 51.1
Actinidia16998 Actinidia chinensis HOM05D007731 ORTHO05D008483 1.3e-43 180.6 239 56.5
QL02p012129 Quercus lobata HOM05D007731 ORTHO05D008483 2.5e-42 176.4 250 53.6
Duzib093G0569 Durio zibethinus HOM05D007731 ORTHO05D008483 3.3e-42 176.0 238 52.1
Thecc.08G047100 Theobroma cacao HOM05D007731 ORTHO05D008483 4.3e-42 175.6 243 52.7
CiPaw.07G147300 Carya illinoinensis HOM05D007731 ORTHO05D008483 7.3e-42 174.9 253 48.6
Potri.002G019700 Populus trichocarpa HOM05D007731 ORTHO05D008483 8.0e-41 171.4 256 47.7
Manes.05G145300 Manihot esculenta HOM05D007731 ORTHO05D008483 1.0e-40 171.0 253 51.0
Gohir.A05G185300 Gossypium hirsutum HOM05D007731 ORTHO05D008483 2.3e-40 169.9 242 52.1
TAR376G0482 Trochodendron aralioides HOM05D007731 ORTHO05D008483 8.9e-40 167.9 239 51.5
CSS0037397 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 1.2e-39 167.5 233 53.2
Potri.005G241800 Populus trichocarpa HOM05D007731 ORTHO05D008483 1.2e-39 167.5 259 48.3
Ciclev10002425m.g Citrus clementina HOM05D007731 ORTHO05D008483 2.2e-38 163.3 237 51.9
CiPaw.08G067400 Carya illinoinensis HOM05D007731 ORTHO05D008483 3.7e-38 162.5 239 49.0
Cfa013976 Carpinus fangiana HOM05D007731 ORTHO05D008483 8.3e-38 161.4 245 46.5
Dinv39536 Davidia involucrata HOM05D007731 ORTHO05D008483 1.1e-37 161.0 171 63.2
MSTRG.25262 Avicennia marina HOM05D007731 ORTHO05D008483 1.4e-37 160.6 253 46.6
TAR628G0423 Trochodendron aralioides HOM05D007731 ORTHO05D008483 1.4e-37 160.6 243 49.0
Actinidia15437 Actinidia chinensis HOM05D007731 ORTHO05D008483 4.1e-37 159.1 216 50.9
COL.COLO4_26124 Corchorus olitorius HOM05D007731 ORTHO05D008483 4.1e-37 159.1 255 46.7
Sabra02G0016000 Salix brachista HOM05D007731 ORTHO05D008483 9.2e-37 157.9 251 44.6
Gorai.009G193400 Gossypium raimondii HOM05D007731 ORTHO05D008483 1.6e-36 157.1 240 49.2
Sabra05G0187200 Salix brachista HOM05D007731 ORTHO05D008483 1.6e-36 157.1 266 45.1
Cpa.g.sc26.305 Carica papaya HOM05D007731 ORTHO05D008483 6.0e-36 155.2 249 45.8
Haze_22661 Corylus avellana HOM05D007731 ORTHO05D008483 7.8e-36 154.8 249 45.0
Prupe.1G363100 Prunus persica HOM05D007731 ORTHO05D008483 1.0e-35 154.5 264 45.5
Dinv31866 Davidia involucrata HOM05D000068 ORTHO05D000084 1.7e-35 153.7 181 56.9
Cc00_g29330 Coffea canephora HOM05D007731 ORTHO05D008483 7.3e-34 148.3 274 42.7
Manes.18G011966 Manihot esculenta HOM05D007731 ORTHO05D008483 9.5e-34 147.9 258 46.9
Nn6g32002 Nelumbo nucifera HOM05D007731 ORTHO05D008483 1.2e-33 147.5 251 46.2
Gohir.D05G188100 Gossypium hirsutum HOM05D007731 ORTHO05D008483 2.8e-33 146.4 240 47.5
CSS0031900 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 2.3e-32 143.3 234 50.4
Lsat_1_v5_gn_8_30081 Lactuca sativa HOM05D007731 ORTHO05D008483 3.1e-32 142.9 262 49.2
Rhsim06G0016400 Rhododendron simsii HOM05D007731 ORTHO05D008483 8.9e-32 141.4 232 45.3
Rhsim06G0019700 Rhododendron simsii HOM05D007731 ORTHO05D008483 4.4e-31 139.0 221 45.2
TWI56G0526 Tripterygium wilfordii HOM05D007731 ORTHO05D008483 5.8e-31 138.7 210 50.0
RcHm_v2.0_Chr6g0303181 Rosa chinensis HOM05D007731 ORTHO05D008483 1.7e-30 137.1 244 46.7
TWI12G0892 Tripterygium wilfordii HOM05D007731 ORTHO05D008483 3.7e-30 136.0 223 45.7
CANSAT25G3722 Cannabis sativa HOM05D007731 ORTHO05D008483 6.4e-30 135.2 216 46.8
FAN27G0472 Fragaria x ananassa HOM05D007731 ORTHO05D008483 4.1e-29 132.5 248 42.7
Gohir.A01G110400 Gossypium hirsutum HOM05D007731 ORTHO05D008483 4.1e-29 132.5 251 42.6
FAN20G0947 Fragaria x ananassa HOM05D007731 ORTHO05D008483 5.4e-29 132.1 248 43.1
FvH4_2g38210 Fragaria vesca HOM05D007731 ORTHO05D008483 9.2e-29 131.3 252 43.7
FAN15G0282 Fragaria x ananassa HOM05D007731 ORTHO05D008483 2.7e-28 129.8 248 42.3
Nn5g30769 Nelumbo nucifera HOM05D007731 ORTHO05D008483 2.7e-28 129.8 150 54.7
Gorai.002G122700 Gossypium raimondii HOM05D007731 ORTHO05D008483 5.6e-26 122.1 252 41.7
Gohir.D01G097000 Gossypium hirsutum HOM05D007731 ORTHO05D008483 7.3e-26 121.7 252 41.7
ClCG08G014190 Citrullus lanatus HOM05D007731 ORTHO05D008483 1.1e-24 117.9 231 41.6
Phvul.009G009600 Phaseolus vulgaris HOM05D007731 ORTHO05D008483 3.4e-23 112.8 204 44.1
VMungo1309G0548 Vigna mungo HOM05D007731 ORTHO05D008483 1.3e-22 110.9 222 40.5
Glyma.04G023500 Glycine max HOM05D007731 ORTHO05D008483 2.2e-22 110.2 239 39.7
Aqoxy6G02285 Aquilegia oxysepala HOM05D007731 ORTHO05D008483 8.3e-22 108.2 264 40.5
Lalb_Chr23g0266081 Lupinus albus HOM05D007731 ORTHO05D008483 1.1e-21 107.8 220 41.4
Sed0013309 Sechium edule HOM05D007731 ORTHO05D008483 1.9e-21 107.1 225 40.0
Lj1g0026139 Lotus japonicus HOM05D007731 ORTHO05D008483 7.1e-21 105.1 259 39.0
Gohir.D02G098500 Gossypium hirsutum HOM05D007731 ORTHO05D008483 2.1e-20 103.6 216 45.8
ECA233G0921 Erigeron canadensis HOM05D007731 ORTHO05D008483 4.6e-20 102.4 241 34.9
Gohir.A02G083100 Gossypium hirsutum HOM05D007731 ORTHO05D008483 7.8e-20 101.7 215 45.6
CsaV3_2G024250 Cucumis sativus L. HOM05D007731 ORTHO05D008483 1.0e-19 101.3 179 41.9
Eucgr.H00961 Eucalyptus grandis HOM05D007731 ORTHO05D008483 1.3e-19 100.9 278 38.5
PGSC0003DMG400009876 Solanum tuberosum HOM05D007731 ORTHO05D008483 1.3e-19 100.9 286 35.7
Gorai.005G112400 Gossypium raimondii HOM05D007731 ORTHO05D008483 3.0e-19 99.8 217 45.6
SGA_v2.0_scaffold92G28205 Striga asiatica HOM05D007731 ORTHO05D008483 3.0e-19 99.8 241 41.1
arahy.Tifrunner.gnm1.ann1.WY2XWP Arachis hypogaea HOM05D007731 ORTHO05D008483 4.7e-17 92.4 207 38.6
PGR031G1853 Punica granatum HOM05D007731 ORTHO05D008483 4.7e-17 92.4 236 39.0
TPR.G34549 Trifolium pratense HOM05D007731 ORTHO05D008483 8.1e-17 91.7 229 37.1
Glyma.06G023400 Glycine max HOM05D007731 ORTHO05D008483 1.1e-16 91.3 218 37.6
Sopen04g035340 Solanum pennellii HOM05D007731 ORTHO05D008483 1.4e-16 90.9 121 52.1
Ca_15482_v3 Cicer arietinum L. HOM05D007731 ORTHO05D008483 3.1e-16 89.7 123 52.0
arahy.Tifrunner.gnm1.ann1.3IU0NQ Arachis hypogaea HOM05D007731 ORTHO05D008483 8.9e-16 88.2 211 37.4
Psat0s2878g0040 Pisum sativum HOM05D007731 ORTHO05D008483 1.5e-15 87.4 226 37.2
PSO541G3821 Papaver somniferum HOM05D007731 ORTHO05D008483 2.6e-15 86.7 268 36.2
Medtr3g113660 Medicago truncatula HOM05D007731 ORTHO05D008483 3.4e-15 86.3 219 36.5
Sc15g0004830 Simmondsia chinensis HOM05D007731 ORTHO05D008483 1.9e-13 80.5 96 51.0
Migut.C00858 Erythranthe guttata HOM05D007731 ORTHO05D008483 3.2e-13 79.7 181 39.8
DCAR_013881 Daucus carota HOM05D007731 ORTHO05D008483 1.1e-10 71.2 211 34.1
BcaB07g32022 Brassica carinata HOM05D009961 ORTHO05D008483 1.9e-10 70.5 52 63.5
BcaC05g25901 Brassica carinata HOM05D009961 ORTHO05D008483 2.5e-10 70.1 91 45.1
C05p18560 Brassica napus HOM05D009961 ORTHO05D008483 2.5e-10 70.1 91 45.1
BolC5t30567H Brassica oleracea HOM05D009961 ORTHO05D008483 2.5e-10 70.1 91 45.1
ClCG05G015580 Citrullus lanatus HOM05D007731 ORTHO05D008483 2.5e-10 70.1 93 51.6
THA.LOC104811421 Tarenaya hassleriana HOM05D009961 ORTHO05D008483 2.5e-10 70.1 59 61.0
BraA06t24726Z Brassica rapa HOM05D009961 ORTHO05D008483 3.3e-10 69.7 52 63.5
A06p16220 Brassica napus HOM05D009961 ORTHO05D008483 5.6e-10 68.9 67 55.2
BcaB03g14337 Brassica carinata HOM05D009961 ORTHO05D008483 7.3e-10 68.6 52 61.5
A07p16020 Brassica napus HOM05D009961 ORTHO05D008483 1.6e-09 67.4 52 61.5
BraA07t29330Z Brassica rapa HOM05D009961 ORTHO05D008483 1.6e-09 67.4 52 61.5
CsaV3_3G045970 Cucumis sativus L. HOM05D007731 ORTHO05D008483 2.1e-09 67.0 229 34.9
Lalb_Chr19g0131461 Lupinus albus HOM05D007731 ORTHO05D008483 2.1e-09 67.0 235 27.2
AT1G20070 Arabidopsis thaliana HOM05D009961 ORTHO05D008483 2.8e-09 66.6 52 59.6
AUR62041477 Chenopodium quinoa HOM05D007731 ORTHO05D008483 2.8e-09 66.6 94 47.9
BolC7t42871H Brassica oleracea HOM05D009961 ORTHO05D008483 3.6e-09 66.2 51 58.8
Carub.0001s1960 Capsella rubella HOM05D009961 ORTHO05D008483 4.8e-09 65.9 233 30.5
VMungo0540G1436 Vigna mungo HOM05D001921 ORTHO05D001784 1.1e-08 64.7 94 43.6
CARHR020550 Cardamine hirsuta HOM05D009961 ORTHO05D008483 1.8e-08 63.9 232 31.9
MELO3C003742.2 Cucumis melo HOM05D007731 ORTHO05D008483 2.4e-08 63.5 227 33.9
ATR0712G013 Amborella trichopoda HOM05D007731 ORTHO05D008483 4.0e-08 62.8 125 37.6
AL1G32880 Arabidopsis lyrata HOM05D009961 ORTHO05D008483 4.0e-08 62.8 52 55.8
Gohir.A10G105100 Gossypium hirsutum HOM05D001921 ORTHO05D001784 4.0e-08 62.8 85 44.7
Gohir.D10G163601 Gossypium hirsutum HOM05D001921 ORTHO05D001784 4.0e-08 62.8 85 44.7
MBI18_g10965_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 4.0e-08 62.8 123 39.8
TAR365G0872 Trochodendron aralioides HOM05D001921 ORTHO05D001784 4.0e-08 62.8 97 44.3
Aa31LG7G4510 Aethionema arabicum HOM05D009961 ORTHO05D008483 5.3e-08 62.4 53 58.5
Gorai.011G182400 Gossypium raimondii HOM05D001921 ORTHO05D001784 5.3e-08 62.4 85 44.7
TAR362G1200 Trochodendron aralioides HOM05D001921 ORTHO05D001784 6.9e-08 62.0 88 47.7
Phvul.006G158900 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 1.2e-07 61.2 85 47.1
Sp1g17840 Schrenkiella parvula HOM05D009961 ORTHO05D008483 1.5e-07 60.8 53 56.6
Duzib151G0850 Durio zibethinus HOM05D001921 ORTHO05D001784 2.0e-07 60.5 85 43.5
Potri.008G198000 Populus trichocarpa HOM05D001921 ORTHO05D001784 2.6e-07 60.1 137 35.8
Potri.010G027500 Populus trichocarpa HOM05D001921 ORTHO05D001784 3.4e-07 59.7 95 41.1
Sabra08G0162400 Salix brachista HOM05D001921 ORTHO05D001784 3.4e-07 59.7 137 36.5
BcaC07g39017 Brassica carinata HOM05D009961 ORTHO05D008483 4.4e-07 59.3 53 54.7
C08p19900 Brassica napus HOM05D009961 ORTHO05D008483 4.4e-07 59.3 53 54.7
BolC8t49628H Brassica oleracea HOM05D009961 ORTHO05D008483 4.4e-07 59.3 53 54.7
Hma1.2p1_0511F.1_g169240 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 4.4e-07 59.3 85 44.7
CiPaw.02G088800 Carya illinoinensis HOM05D001921 ORTHO05D001784 5.8e-07 58.9 87 42.5
Ah.11g039950 Amaranthus hybridus HOM05D047386 ORTHO05D008483 1.3e-06 57.8 92 46.7
Manes.03G188600 Manihot esculenta HOM05D001921 ORTHO05D001784 1.3e-06 57.8 94 38.3
Thecc.04G273300 Theobroma cacao HOM05D001921 ORTHO05D001784 1.3e-06 57.8 85 41.2
Glyma.13G212500 Glycine max HOM05D001921 ORTHO05D001784 1.7e-06 57.4 87 43.7
DCAR_023282 Daucus carota HOM05D001921 ORTHO05D001784 2.2e-06 57.0 89 42.7
Manes.15G019800 Manihot esculenta HOM05D001921 ORTHO05D001784 2.2e-06 57.0 93 39.8
QL06p006408 Quercus lobata HOM05D001921 ORTHO05D001784 2.2e-06 57.0 94 40.4
unitig_749.g13899 Utricularia gibba HOM05D007731 ORTHO05D008483 2.2e-06 57.0 197 32.5
Thhalv10008606m.g Eutrema salsugineum HOM05D009961 ORTHO05D008483 2.9e-06 56.6 223 30.9
Lj6g0003156 Lotus japonicus HOM05D001921 ORTHO05D001784 3.8e-06 56.2 87 39.1
Lj6g0019677 Lotus japonicus HOM05D001921 ORTHO05D001784 3.8e-06 56.2 87 39.1
ATR0580G129 Amborella trichopoda HOM05D001921 ORTHO05D001784 4.9e-06 55.8 89 43.8
ClCG06G005610 Citrullus lanatus HOM05D001921 ORTHO05D001784 6.4e-06 55.5 87 40.2
Sabra10G0013000 Salix brachista HOM05D001921 ORTHO05D001784 6.4e-06 55.5 93 37.6
Thecc.09G018900 Theobroma cacao HOM05D001921 ORTHO05D001784 6.4e-06 55.5 105 37.1


User provided reference genes

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