Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005090 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006282 8.4e-178 627.1 359 100.0
Dinv42395 Davidia involucrata HOM05D002335 ORTHO05D006282 2.3e-151 539.3 359 87.2
Dinv25558 Davidia involucrata HOM05D002335 ORTHO05D006282 2.8e-149 532.3 340 89.1
Hma1.2p1_0169F.1_g074510 Hydrangea macrophylla HOM05D002335 ORTHO05D006282 6.9e-148 527.7 343 81.9
Actinidia29935 Actinidia chinensis HOM05D002335 ORTHO05D006282 2.7e-144 515.8 350 87.1
Gohir.D13G196375 Gossypium hirsutum HOM05D002335 ORTHO05D006282 4.6e-144 515.0 356 76.4
Ciclev10008755m.g Citrus clementina HOM05D002335 ORTHO05D006282 1.0e-143 513.8 346 78.0
GSVIVG01015081001 Vitis vinifera HOM05D002335 ORTHO05D006282 1.4e-143 513.5 359 81.9
Duzib187G0696 Durio zibethinus HOM05D002335 ORTHO05D006282 2.3e-143 512.7 356 83.7
Gorai.013G224300 Gossypium raimondii HOM05D002335 ORTHO05D006282 1.1e-142 510.4 357 76.2
CiPaw.04G143000 Carya illinoinensis HOM05D002335 ORTHO05D006282 4.3e-142 508.4 358 76.0
Gohir.A13G190800 Gossypium hirsutum HOM05D002335 ORTHO05D006282 7.4e-142 507.7 356 76.1
Thecc.09G076700 Theobroma cacao HOM05D002335 ORTHO05D006282 3.7e-141 505.4 356 82.0
Cfa002987 Carpinus fangiana HOM05D002335 ORTHO05D006282 2.0e-139 499.6 356 74.4
COL.COLO4_18096 Corchorus olitorius HOM05D002335 ORTHO05D006282 1.7e-138 496.5 356 82.3
Migut.J00924 Erythranthe guttata HOM05D002335 ORTHO05D006282 1.2e-136 490.3 353 73.9
FvH4_1g08690 Fragaria vesca HOM05D002335 ORTHO05D006282 3.6e-136 488.8 359 73.5
Potri.018G056500 Populus trichocarpa HOM05D002335 ORTHO05D006282 4.7e-136 488.4 356 74.4
Nn8g38636 Nelumbo nucifera HOM05D002335 ORTHO05D006282 3.0e-135 485.7 352 77.3
ClCG03G015070 Citrullus lanatus HOM05D002335 ORTHO05D006282 5.1e-135 485.0 356 72.5
TAR383G0969 Trochodendron aralioides HOM05D002335 ORTHO05D006282 6.7e-135 484.6 350 77.7
MSTRG.19458 Avicennia marina HOM05D002335 ORTHO05D006282 8.8e-135 484.2 353 79.6
Cc06_g12190 Coffea canephora HOM05D002335 ORTHO05D006282 2.0e-134 483.0 350 78.9
Glyma.15G177700 Glycine max HOM05D002335 ORTHO05D006282 3.3e-134 482.3 347 73.5
Duzib168G0796 Durio zibethinus HOM05D002335 ORTHO05D006282 3.7e-133 478.8 338 81.7
Lj6g0009960 Lotus japonicus HOM05D002335 ORTHO05D006282 4.8e-133 478.4 356 75.0
FAN26G1551 Fragaria x ananassa HOM05D002335 ORTHO05D006282 6.3e-133 478.0 359 78.6
Sed0016034 Sechium edule HOM05D002335 ORTHO05D006282 1.1e-132 477.2 357 71.1
MBI19_g16223_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006282 1.4e-132 476.9 353 74.8
Carub.0003s2712 Capsella rubella HOM05D002335 ORTHO05D006282 1.8e-132 476.5 356 78.9
FAN28G1803 Fragaria x ananassa HOM05D002335 ORTHO05D006282 2.4e-132 476.1 359 78.0
RcHm_v2.0_Chr2g0095141 Rosa chinensis HOM05D002335 ORTHO05D006282 3.1e-132 475.7 355 78.0
MD02G1091400 Malus domestica HOM05D002335 ORTHO05D006282 4.1e-132 475.3 359 76.0
TPR.G27760 Trifolium pratense HOM05D002335 ORTHO05D006282 4.1e-132 475.3 353 71.7
Phvul.009G227200 Phaseolus vulgaris HOM05D002335 ORTHO05D006282 5.3e-132 474.9 356 70.5
Aqoxy7G04129 Aquilegia oxysepala HOM05D002335 ORTHO05D006282 7.0e-132 474.6 356 75.3
Glyma.09G069700 Glycine max HOM05D002335 ORTHO05D006282 4.5e-131 471.9 346 75.4
Solyc12g009100.2 Solanum lycopersicum HOM05D002335 ORTHO05D006282 5.9e-131 471.5 346 72.0
Sopen12g004050 Solanum pennellii HOM05D002335 ORTHO05D006282 1.3e-130 470.3 346 71.7
VMungo1309G0226 Vigna mungo HOM05D002335 ORTHO05D006282 1.3e-130 470.3 358 71.2
Ca_02205_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006282 1.7e-130 469.9 346 78.6
THA.LOC104815334 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 3.8e-130 468.8 344 74.4
AL3G43580 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 8.5e-130 467.6 357 78.2
Eucgr.C03328 Eucalyptus grandis HOM05D002335 ORTHO05D006282 1.4e-129 466.8 347 72.9
CANSAT56G2952 Cannabis sativa HOM05D002335 ORTHO05D006282 4.2e-129 465.3 365 75.3
Peaxi162Scf00928g00036 Petunia axillaris HOM05D002335 ORTHO05D006282 4.2e-129 465.3 331 73.7
MELO3C015522.2 Cucumis melo HOM05D002335 ORTHO05D006282 1.2e-128 463.8 356 76.1
PSO135G0390 Papaver somniferum HOM05D002335 ORTHO05D006282 1.2e-128 463.8 353 68.8
Medtr2g041690 Medicago truncatula HOM05D002335 ORTHO05D006282 1.6e-128 463.4 356 76.1
Sp3g24570 Schrenkiella parvula HOM05D002335 ORTHO05D006282 1.6e-128 463.4 356 75.8
Manes.16G095200 Manihot esculenta HOM05D002335 ORTHO05D006282 3.6e-128 462.2 346 73.1
CsaV3_1G041060 Cucumis sativus L. HOM05D002335 ORTHO05D006282 4.7e-128 461.8 356 76.1
PSO724G0129 Papaver somniferum HOM05D002335 ORTHO05D006282 8.0e-128 461.1 353 68.6
Aa31sc133G10 Aethionema arabicum HOM05D002335 ORTHO05D006282 1.0e-127 460.7 346 72.5
TWI34G0307 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 3.9e-127 458.8 348 71.3
HanXRQChr04g0126011 Helianthus annuus HOM05D002335 ORTHO05D006282 2.0e-126 456.4 341 70.4
BcaB06g26879 Brassica carinata HOM05D002335 ORTHO05D006282 7.4e-126 454.5 355 70.7
ECA236G4601 Erigeron canadensis HOM05D002335 ORTHO05D006282 3.7e-125 452.2 338 68.9
AUR62028934 Chenopodium quinoa HOM05D002335 ORTHO05D006282 1.8e-124 449.9 356 67.7
MD15G1217700 Malus domestica HOM05D002335 ORTHO05D006282 1.6e-123 446.8 323 79.9
Sabra18G0052300 Salix brachista HOM05D002335 ORTHO05D006282 3.5e-123 445.7 435 59.8
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 5.9e-123 444.9 340 71.8
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 3.8e-122 442.2 340 71.8
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 3.8e-122 442.2 340 71.8
BcaC06g35950 Brassica carinata HOM05D002335 ORTHO05D006282 6.5e-122 441.4 354 70.3
Lsat_1_v5_gn_8_86481 Lactuca sativa HOM05D002335 ORTHO05D006282 7.2e-121 438.0 341 68.0
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 9.4e-121 437.6 356 69.1
Eucgr.C03263 Eucalyptus grandis HOM05D002335 ORTHO05D006282 6.1e-120 434.9 329 71.4
Prupe.7G198700 Prunus persica HOM05D002335 ORTHO05D006282 6.1e-120 434.9 359 72.7
EL10Ac8g19056 Beta vulgaris HOM05D002335 ORTHO05D006282 8.0e-120 434.5 377 65.0
vmacro06343 Vaccinium macrocarpon HOM05D002335 ORTHO05D006282 1.8e-119 433.3 410 66.1
QL11p000781 Quercus lobata HOM05D002335 ORTHO05D006282 1.2e-118 430.6 381 71.4
HPP92_004364 Vanilla planifolia HOM05D002335 ORTHO05D006282 1.2e-118 430.6 338 71.0
Atru.chr7.1708 Acer truncatum HOM05D002335 ORTHO05D006282 2.0e-118 429.9 284 77.8
Thhalv10014003m.g Eutrema salsugineum HOM05D002335 ORTHO05D006282 5.7e-118 428.3 337 68.0
Haze_26014 Corylus avellana HOM05D002335 ORTHO05D006282 2.2e-117 426.4 394 62.7
Sopen07g021360 Solanum pennellii HOM05D002335 ORTHO05D006282 4.8e-117 425.2 331 75.2
SGA_v2.0_scaffold308G48076 Striga asiatica HOM05D002335 ORTHO05D006282 4.8e-117 425.2 374 66.3
Sp6g23900 Schrenkiella parvula HOM05D002335 ORTHO05D006282 1.4e-116 423.7 347 66.9
AL6G32120 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 2.4e-116 422.9 347 66.9
Rhsim03G0227400 Rhododendron simsii HOM05D002335 ORTHO05D005129 4.1e-116 422.2 397 69.8
Carub.0006s1891 Capsella rubella HOM05D002335 ORTHO05D006282 7.0e-116 421.4 347 66.0
AT5G20580 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 2.0e-115 419.9 346 65.9
SalBow6G4624 Salvia bowleyana HOM05D002335 ORTHO05D006282 2.7e-115 419.5 367 64.3
Manes.03G040500 Manihot esculenta HOM05D002335 ORTHO05D006282 3.5e-115 419.1 353 68.0
Nitab4.5_0011754g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006282 4.5e-115 418.7 345 67.5
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 5.9e-115 418.3 347 66.0
BraA03t10325Z Brassica rapa HOM05D002335 ORTHO05D006282 5.9e-115 418.3 347 66.0
THA.LOC104799620 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 7.7e-115 417.9 331 67.7
ATR0598G025 Amborella trichopoda HOM05D002335 ORTHO05D006282 2.9e-114 416.0 350 62.6
PGR044G1875 Punica granatum HOM05D002335 ORTHO05D006282 1.1e-113 414.1 314 76.1
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 1.6e-112 410.2 322 73.9
AUR62025250 Chenopodium quinoa HOM05D002335 ORTHO05D006282 3.6e-112 409.1 336 66.4
TWI63G1279 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 3.0e-111 406.0 354 70.9
Hund26035 Selenicereus undatus HOM05D002335 ORTHO05D006282 2.0e-110 403.3 303 70.0
CARHR103630 Cardamine hirsuta HOM05D002335 ORTHO05D006282 6.3e-109 398.3 302 78.5
arahy.Tifrunner.gnm1.ann1.UHGN3W Arachis hypogaea HOM05D002335 ORTHO05D006282 1.4e-108 397.1 340 71.5
CAN.G1661.12 Capsicum annuum HOM05D002335 ORTHO05D006282 5.4e-108 395.2 346 65.0
Zm00001eb256890 Zea mays HOM05D002335 ORTHO05D006282 2.9e-106 389.4 345 60.3
AT2G06005 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 3.0e-103 379.4 296 77.7
Psat1g134320 Pisum sativum HOM05D002335 ORTHO05D006282 8.3e-101 371.3 265 80.0
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 2.0e-99 366.7 308 65.3
CARHR192220 Cardamine hirsuta HOM05D002335 ORTHO05D006282 2.3e-98 363.2 296 67.2
Psat3g025000 Pisum sativum HOM05D002335 ORTHO05D006282 5.6e-97 358.6 249 72.7
HPP92_004366 Vanilla planifolia HOM05D002335 ORTHO05D006282 2.8e-96 356.3 338 62.4
Nitab4.5_0000073g0170 Nicotiana tabacum HOM05D002335 ORTHO05D006282 1.0e-95 354.4 399 53.9
Aa31LG1G14100 Aethionema arabicum HOM05D002335 ORTHO05D006282 8.9e-95 351.3 441 50.1
Cpa.g.sc28.33 Carica papaya HOM05D002335 ORTHO05D006282 3.7e-93 345.9 230 77.8
SEGI_06962 Sequoiadendron giganteum HOM05D002335 ORTHO05D006282 3.0e-90 336.3 351 52.7
Sc18g0002560 Simmondsia chinensis HOM05D002335 ORTHO05D006282 8.9e-87 324.7 244 80.7
Nitab4.5_0009436g0040 Nicotiana tabacum HOM05D002335 ORTHO05D006282 2.2e-85 320.1 409 51.1
SHI23809 Sapria himalayana HOM05D002335 ORTHO05D006282 3.3e-81 306.2 235 70.6
Lj7C687T14 Lonicera japonica HOM05D002335 ORTHO05D006282 5.6e-81 305.4 266 66.2
FAN23G1616 Fragaria x ananassa HOM05D002335 ORTHO05D006282 5.2e-79 298.9 251 68.1
Peaxi162Scf00127g01814 Petunia axillaris HOM05D002335 ORTHO05D006282 4.4e-78 295.8 240 70.0
CDE02G0868 Ceratophyllum demersum HOM05D002335 ORTHO05D006282 1.6e-75 287.3 228 66.2
arahy.Tifrunner.gnm1.ann1.3UYF95 Arachis hypogaea HOM05D002335 ORTHO05D006282 7.3e-73 278.5 224 65.6
Lalb_Chr23g0276371 Lupinus albus HOM05D002335 ORTHO05D006282 1.2e-72 277.7 205 69.3
Lalb_Chr07g0181191 Lupinus albus HOM05D002335 ORTHO05D006282 4.0e-71 272.7 231 62.8
CAN.G404.48 Capsicum annuum HOM05D002335 ORTHO05D006282 2.9e-69 266.5 304 53.6
DCAR_028335 Daucus carota HOM05D002335 ORTHO05D006282 1.0e-66 258.1 197 77.2
Actinidia38482 Actinidia chinensis HOM05D002335 ORTHO05D006282 3.1e-63 246.5 149 84.6
Mapoly0011s0025 Marchantia polymorpha HOM05D002335 ORTHO05D006282 3.1e-63 246.5 336 42.6
Pp3c22_13730 Physcomitrium patens HOM05D002335 ORTHO05D006282 5.3e-63 245.7 324 45.7
Pp3c2_6470 Physcomitrium patens HOM05D002335 ORTHO05D006282 1.3e-58 231.1 340 40.6
Nitab4.5_0000343g0220 Nicotiana tabacum HOM05D002335 ORTHO05D006282 4.8e-48 196.1 129 75.2
MD02G1091600 Malus domestica HOM05D002335 ORTHO05D006282 6.2e-48 195.7 150 65.3
Lalb_Chr07g0181181 Lupinus albus HOM05D002335 ORTHO05D006282 8.4e-45 185.3 171 73.1
Lalb_Chr23g0276381 Lupinus albus HOM05D002335 ORTHO05D006282 1.8e-42 177.6 135 73.3
Actinidia38481 Actinidia chinensis HOM05D002335 ORTHO05D006282 4.0e-39 166.4 131 90.8
SMO358G0254 Selaginella moellendorffii HOM05D002335 ORTHO05D006282 4.0e-39 166.4 206 49.0
Solyc07g041890.1 Solanum lycopersicum HOM05D002335 ORTHO05D006282 3.8e-29 133.3 181 47.5
AagrBONN_evm.TU.Sc2ySwM_344.5493 Anthoceros agrestis HOM05D002335 ORTHO05D006282 8.5e-29 132.1 279 33.7
Cpa.g.sc28.37 Carica papaya HOM05D002335 ORTHO05D006282 4.8e-24 116.3 113 62.8
Nitab4.5_0000343g0210 Nicotiana tabacum HOM05D002335 ORTHO05D006282 1.5e-22 111.3 98 67.3
Medtr2g041390 Medicago truncatula HOM05D002335 ORTHO05D006282 2.0e-22 110.9 111 81.1
arahy.Tifrunner.gnm1.ann1.HK8DFN Arachis hypogaea HOM05D002335 ORTHO05D006282 8.5e-21 105.5 100 55.0
Oeu011491.2 Olea europaea HOM05D002335 ORTHO05D006282 1.1e-20 105.1 78 65.4
CBR_g26318 Chara braunii HOM05D002335 ORTHO05D006282 3.2e-20 103.6 217 34.6
Oeu031390.1 Olea europaea HOM05D002335 ORTHO05D006282 6.3e-16 89.4 50 80.0
Psat6g064600 Pisum sativum HOM05D004726 ORTHO05D005986 4.5e-14 83.2 53 81.1
Ah.14g084930 Amaranthus hybridus HOM05D002335 ORTHO05D006282 5.5e-12 76.3 87 52.9
arahy.Tifrunner.gnm1.ann1.S4WZ34 Arachis hypogaea HOM05D000237 ORTHO05D017465 9.4e-12 75.5 57 56.1
arahy.Tifrunner.gnm1.ann1.WCUD5S Arachis hypogaea HOM05D000237 ORTHO05D017465 5.2e-10 69.7 83 47.0
arahy.Tifrunner.gnm1.ann1.Y6L4BT Arachis hypogaea HOM05D000237 ORTHO05D017465 6.7e-10 69.3 72 45.8
arahy.Tifrunner.gnm1.ann1.2X24PF Arachis hypogaea HOM05D002335 ORTHO05D006282 2.4e-07 60.8 58 60.3
arahy.Tifrunner.gnm1.ann1.9B3XF4 Arachis hypogaea HOM05D000237 ORTHO05D017465 5.3e-07 59.7 47 53.2
PGSC0003DMG400019032 Solanum tuberosum HOM05D002335 ORTHO05D006282 2.0e-06 57.8 39 74.4
FvH4_1g08700 Fragaria vesca HOM05D000069 ORTHO05D021424 3.5e-06 57.0 44 65.9


User provided reference genes

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