Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005086 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 9.6e-59 229.9 115 100.0
CSS0009464 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 4.6e-53 211.1 105 100.0
Actinidia05903 Actinidia chinensis HOM05D006526 ORTHO05D008496 3.8e-39 164.9 112 75.9
Actinidia36203 Actinidia chinensis HOM05D006526 ORTHO05D008496 6.0e-37 157.5 112 73.2
Dinv33336 Davidia involucrata HOM05D006526 ORTHO05D008496 7.9e-37 157.1 105 77.1
Rhsim10G0006300 Rhododendron simsii HOM05D006526 ORTHO05D008496 5.3e-33 144.4 105 71.4
vmacro05958 Vaccinium macrocarpon HOM05D006526 ORTHO05D008496 4.9e-31 137.9 105 69.5
Migut.K01466 Erythranthe guttata HOM05D006526 ORTHO05D008496 6.0e-29 131.0 106 66.0
Solyc02g094150.4 Solanum lycopersicum HOM05D006526 ORTHO05D008496 7.9e-29 130.6 107 62.6
Sopen02g038780 Solanum pennellii HOM05D006526 ORTHO05D008496 7.9e-29 130.6 107 62.6
Nitab4.5_0010204g0040 Nicotiana tabacum HOM05D006526 ORTHO05D008496 2.3e-28 129.0 96 67.7
CAN.G473.100 Capsicum annuum HOM05D006526 ORTHO05D008496 3.0e-28 128.6 109 64.2
Nitab4.5_0002050g0140 Nicotiana tabacum HOM05D006526 ORTHO05D008496 3.9e-28 128.3 96 67.7
Peaxi162Scf00420g00560 Petunia axillaris HOM05D006526 ORTHO05D008496 6.7e-28 127.5 110 64.5
MSTRG.3258 Avicennia marina HOM05D006526 ORTHO05D008496 1.9e-27 125.9 96 70.8
TAR629G1757 Trochodendron aralioides HOM05D006526 ORTHO05D008496 2.5e-27 125.6 111 64.9
Cc07_g00840 Coffea canephora HOM05D006526 ORTHO05D008496 7.4e-27 124.0 110 62.7
Hma1.2p1_1278F.1_g272280 Hydrangea macrophylla HOM05D006526 ORTHO05D008496 2.8e-26 122.1 109 63.3
unitig_88.g27695 Utricularia gibba HOM05D006526 ORTHO05D008496 4.8e-26 121.3 105 62.9
SalBow7G1947 Salvia bowleyana HOM05D006526 ORTHO05D008496 8.2e-26 120.6 98 66.3
CiPaw.03G055600 Carya illinoinensis HOM05D006526 ORTHO05D008496 3.1e-25 118.6 101 62.4
Lsat_1_v5_gn_2_93080 Lactuca sativa HOM05D006526 ORTHO05D008496 5.3e-25 117.9 105 59.0
Atru.chr6.2570 Acer truncatum HOM05D006526 ORTHO05D008496 1.5e-24 116.3 82 74.4
Manes.15G161000 Manihot esculenta HOM05D006526 ORTHO05D008496 2.6e-24 115.5 103 60.2
SGA_v2.0_scaffold47G17596 Striga asiatica HOM05D006526 ORTHO05D008496 2.6e-24 115.5 97 62.9
AUR62017828 Chenopodium quinoa HOM05D006526 ORTHO05D008496 3.4e-24 115.2 95 63.2
Haze_14876 Corylus avellana HOM05D006526 ORTHO05D008496 4.5e-24 114.8 106 63.2
ECA238G1207 Erigeron canadensis HOM05D006526 ORTHO05D008496 4.5e-24 114.8 104 57.7
Oeu005097.1 Olea europaea HOM05D006526 ORTHO05D008496 4.5e-24 114.8 63 82.5
Ciclev10015967m.g Citrus clementina HOM05D006526 ORTHO05D008496 5.9e-24 114.4 82 70.7
GSVIVG01033093001 Vitis vinifera HOM05D006526 ORTHO05D008496 7.6e-24 114.0 77 75.3
Lju41C52G13 Lonicera japonica HOM05D002875 ORTHO05D003215 1.0e-23 113.6 108 62.0
Sabra16G0211400 Salix brachista HOM05D006526 ORTHO05D008496 1.7e-23 112.8 90 65.6
Potri.001G330100 Populus trichocarpa HOM05D006526 ORTHO05D008496 2.2e-23 112.5 88 65.9
HanXRQChr14g0450751 Helianthus annuus HOM05D006526 ORTHO05D008496 5.0e-23 111.3 92 63.0
RcHm_v2.0_Chr2g0175561 Rosa chinensis HOM05D006526 ORTHO05D008496 1.4e-22 109.8 95 65.3
Cfa007227 Carpinus fangiana HOM05D006526 ORTHO05D008496 1.9e-22 109.4 98 63.3
Duzib147G1379 Durio zibethinus HOM05D006526 ORTHO05D008496 1.9e-22 109.4 97 60.8
Thecc.04G036000 Theobroma cacao HOM05D006526 ORTHO05D008496 1.9e-22 109.4 81 69.1
Thhalv10000573m.g Eutrema salsugineum HOM05D006526 ORTHO05D008496 2.5e-22 109.0 87 64.4
QL02p071428 Quercus lobata HOM05D006526 ORTHO05D008496 2.5e-22 109.0 82 68.3
FAN09G0514 Fragaria x ananassa HOM05D002875 ORTHO05D003215 3.2e-22 108.6 101 63.4
arahy.Tifrunner.gnm1.ann1.4N5YWB Arachis hypogaea HOM05D006526 ORTHO05D008496 5.5e-22 107.8 88 62.5
Carub.0003s0016 Capsella rubella HOM05D006526 ORTHO05D008496 5.5e-22 107.8 81 66.7
COL.COLO4_13261 Corchorus olitorius HOM05D006526 ORTHO05D008496 7.2e-22 107.5 102 57.8
arahy.Tifrunner.gnm1.ann1.C96CVE Arachis hypogaea HOM05D006526 ORTHO05D008496 1.2e-21 106.7 88 61.4
Nn4g22325 Nelumbo nucifera HOM05D006526 ORTHO05D008496 1.2e-21 106.7 104 59.6
FvH4_6g53521 Fragaria vesca HOM05D006526 ORTHO05D008496 2.7e-21 105.5 102 60.8
THA.LOC104821121 Tarenaya hassleriana HOM05D006526 ORTHO05D008496 2.7e-21 105.5 71 74.6
BcaB05g22967 Brassica carinata HOM05D006526 ORTHO05D008496 3.5e-21 105.1 92 59.8
Eucgr.J02351 Eucalyptus grandis HOM05D006526 ORTHO05D008496 3.5e-21 105.1 82 68.3
PGR042G1209 Punica granatum HOM05D006526 ORTHO05D008496 3.5e-21 105.1 67 71.6
Lalb_Chr14g0363401 Lupinus albus HOM05D006526 ORTHO05D008496 4.6e-21 104.8 89 59.6
Aa31LG5G11040 Aethionema arabicum HOM05D006526 ORTHO05D008496 6.1e-21 104.4 101 59.4
AL3G10210 Arabidopsis lyrata HOM05D006526 ORTHO05D008496 6.1e-21 104.4 99 58.6
A01p25030 Brassica napus HOM05D006526 ORTHO05D008496 6.1e-21 104.4 92 60.9
BcaC09g49919 Brassica carinata HOM05D006526 ORTHO05D008496 1.0e-20 103.6 96 58.3
PSO478G2106 Papaver somniferum HOM05D006526 ORTHO05D008496 1.0e-20 103.6 110 58.2
C01p31260 Brassica napus HOM05D006526 ORTHO05D008496 1.8e-20 102.8 92 59.8
BolC1t03065H Brassica oleracea HOM05D006526 ORTHO05D008496 1.8e-20 102.8 92 59.8
BraA01t02414Z Brassica rapa HOM05D006526 ORTHO05D008496 1.8e-20 102.8 92 59.8
Prupe.3G306300 Prunus persica HOM05D006526 ORTHO05D008496 1.8e-20 102.8 105 60.0
AT3G01920 Arabidopsis thaliana HOM05D006526 ORTHO05D008496 2.3e-20 102.4 79 62.0
TWI56G1218 Tripterygium wilfordii HOM05D006526 ORTHO05D008496 3.0e-20 102.1 86 65.1
CANSAT64G1234 Cannabis sativa HOM05D006526 ORTHO05D008496 3.9e-20 101.7 81 66.7
FAN05G0398 Fragaria x ananassa HOM05D002875 ORTHO05D003215 3.9e-20 101.7 100 60.0
MD09G1010800 Malus domestica HOM05D006526 ORTHO05D008496 3.9e-20 101.7 105 60.0
CARHR075020 Cardamine hirsuta HOM05D006526 ORTHO05D008496 5.1e-20 101.3 75 65.3
Gohir.A09G035700 Gossypium hirsutum HOM05D006526 ORTHO05D008496 5.1e-20 101.3 97 60.8
Sc16g0003120 Simmondsia chinensis HOM05D006526 ORTHO05D008496 6.7e-20 100.9 103 57.3
ATR0561G126 Amborella trichopoda HOM05D006526 ORTHO05D008496 8.7e-20 100.5 60 78.3
PSO017G5829 Papaver somniferum HOM05D006526 ORTHO05D008496 8.7e-20 100.5 86 61.6
Glyma.19G091200 Glycine max HOM05D006526 ORTHO05D008496 1.1e-19 100.1 92 59.8
MELO3C014888.2 Cucumis melo HOM05D006526 ORTHO05D008496 1.5e-19 99.8 67 74.6
CsaV3_3G027000 Cucumis sativus L. HOM05D006526 ORTHO05D008496 1.5e-19 99.8 67 74.6
Phvul.001G093500 Phaseolus vulgaris HOM05D006526 ORTHO05D008496 3.3e-19 98.6 89 58.4
Aqoxy3G01551 Aquilegia oxysepala HOM05D006526 ORTHO05D008496 4.3e-19 98.2 64 71.9
CDE05G0752 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 4.3e-19 98.2 91 57.1
VMungo1383G1669 Vigna mungo HOM05D006526 ORTHO05D008496 4.3e-19 98.2 89 58.4
Glyma.16G056500 Glycine max HOM05D006526 ORTHO05D008496 5.7e-19 97.8 81 61.7
ClCG05G013530 Citrullus lanatus HOM05D006526 ORTHO05D008496 7.4e-19 97.4 101 57.4
Cpa.g.sc171.15 Carica papaya HOM05D006526 ORTHO05D008496 9.7e-19 97.1 76 64.5
AUR62003516 Chenopodium quinoa HOM05D006526 ORTHO05D008496 9.7e-19 97.1 112 51.8
Gohir.D09G036900 Gossypium hirsutum HOM05D006526 ORTHO05D008496 1.3e-18 96.7 97 57.7
Gorai.006G042000 Gossypium raimondii HOM05D006526 ORTHO05D008496 1.3e-18 96.7 97 57.7
Sp3g00170 Schrenkiella parvula HOM05D006526 ORTHO05D008496 1.3e-18 96.7 95 54.7
CDE05G2481 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 8.2e-18 94.0 109 50.5
Psat3g163920 Pisum sativum HOM05D006526 ORTHO05D008496 2.4e-17 92.4 58 72.4
HPP92_001419 Vanilla planifolia HOM05D005553 ORTHO05D008496 4.1e-17 91.7 90 57.8
TPR.G14866 Trifolium pratense HOM05D006526 ORTHO05D008496 5.3e-17 91.3 83 56.6
Zm00001eb175140 Zea mays HOM05D006526 ORTHO05D008496 5.3e-17 91.3 92 56.5
Lj1g0010270 Lotus japonicus HOM05D006526 ORTHO05D008496 9.0e-17 90.5 91 54.9
Hund04346 Selenicereus undatus HOM05D006526 ORTHO05D008496 4.5e-16 88.2 62 71.0
Medtr7g034590 Medicago truncatula HOM05D006526 ORTHO05D008496 7.7e-16 87.4 57 70.2
Ca_12964_v3 Cicer arietinum L. HOM05D006526 ORTHO05D008496 1.7e-15 86.3 58 70.7
Pp3c2_22020 Physcomitrium patens HOM05D006526 ORTHO05D008496 2.9e-15 85.5 68 57.4
Os08g0531300 Oryza sativa ssp. japonica HOM05D006526 ORTHO05D008496 3.8e-15 85.1 70 58.6
Medtr6g045617 Medicago truncatula HOM05D006526 ORTHO05D008496 1.4e-14 83.2 58 67.2
CDE06G2358 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 2.5e-14 82.4 58 65.5
AagrBONN_evm.TU.Sc2ySwM_228.1921 Anthoceros agrestis HOM05D006526 ORTHO05D008496 7.2e-14 80.9 59 69.5
Ah.03g147500 Amaranthus hybridus HOM05D006526 ORTHO05D008496 1.5e-11 73.2 40 82.5
SMO137G0097 Selaginella moellendorffii HOM05D006526 ORTHO05D008496 5.7e-11 71.2 61 54.1
CDE04G1482 Ceratophyllum demersum HOM05D006526 ORTHO05D003215 5.3e-09 64.7 59 55.9
QL06p007766 Quercus lobata HOM05D006526 ORTHO05D008496 3.4e-08 62.0 46 65.2
Cre01.g015950 Chlamydomonas reinhardtii HOM05D006526 ORTHO05D008496 3.8e-07 58.5 98 36.7
MBI11_g23476_MAGBIO Magnolia biondii HOM05D006526 ORTHO05D008496 3.2e-06 55.5 57 50.9


User provided reference genes

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