Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005056 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 2.2e-102 375.6 177 100.0
CSS0033735 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 4.7e-89 331.3 177 87.0
Rhsim02G0106300 Rhododendron simsii HOM05D004937 ORTHO05D006414 5.9e-84 314.3 177 81.9
vmacro15793 Vaccinium macrocarpon HOM05D004937 ORTHO05D006414 1.0e-83 313.5 176 81.8
Hma1.2p1_3370F.1_g335650 Hydrangea macrophylla HOM05D004937 ORTHO05D006414 1.9e-82 309.3 177 79.7
Lj1A1232T94 Lonicera japonica HOM05D004937 ORTHO05D006414 1.6e-81 306.2 176 81.8
Sabra04G0005400 Salix brachista HOM05D004937 ORTHO05D006414 3.6e-81 305.1 173 80.3
TWI63G0901 Tripterygium wilfordii HOM05D004937 ORTHO05D006414 2.3e-80 302.4 173 81.5
Potri.004G010400 Populus trichocarpa HOM05D004937 ORTHO05D006414 4.0e-80 301.6 173 79.2
Ciclev10014440m.g Citrus clementina HOM05D004937 ORTHO05D006414 2.0e-79 299.3 173 79.8
Cc09_g01540 Coffea canephora HOM05D004937 ORTHO05D000904 3.4e-79 298.5 176 77.3
MD10G1323300 Malus domestica HOM05D004937 ORTHO05D006414 5.7e-79 297.7 177 75.7
Nn1g07169 Nelumbo nucifera HOM05D004937 ORTHO05D006414 5.7e-79 297.7 173 80.3
GSVIVG01012711001 Vitis vinifera HOM05D004937 ORTHO05D000904 7.5e-79 297.4 177 78.0
Manes.16G005800 Manihot esculenta HOM05D004937 ORTHO05D006414 9.8e-79 297.0 177 77.4
CANSAT56G3877 Cannabis sativa HOM05D004937 ORTHO05D006414 1.3e-78 296.6 177 75.7
Prupe.4G019000 Prunus persica HOM05D004937 ORTHO05D006414 4.9e-78 294.7 177 75.7
RcHm_v2.0_Chr5g0002731 Rosa chinensis HOM05D004937 ORTHO05D006414 1.4e-77 293.1 177 76.3
TAR624G0274 Trochodendron aralioides HOM05D004937 ORTHO05D006414 2.4e-77 292.4 177 76.8
QL05p072835 Quercus lobata HOM05D004937 ORTHO05D006414 3.2e-77 292.0 173 78.0
CiPaw.09G093200 Carya illinoinensis HOM05D004937 ORTHO05D006414 9.2e-77 290.4 177 75.7
FvH4_3g01860 Fragaria vesca HOM05D004937 ORTHO05D006414 2.9e-75 285.4 177 73.4
MSTRG.15996 Avicennia marina HOM05D004937 ORTHO05D006414 5.0e-75 284.6 173 74.6
Haze_06813 Corylus avellana HOM05D004937 ORTHO05D006414 5.0e-75 284.6 177 74.6
Sc24g0000210 Simmondsia chinensis HOM05D004937 ORTHO05D006414 5.0e-75 284.6 176 71.6
DCAR_024931 Daucus carota HOM05D004937 ORTHO05D006414 1.1e-74 283.5 174 73.6
DCAR_028195 Daucus carota HOM05D004937 ORTHO05D006414 1.1e-74 283.5 177 73.4
FAN21G0664 Fragaria x ananassa HOM05D004937 ORTHO05D006414 1.5e-74 283.1 177 73.4
Glyma.17G012400 Glycine max HOM05D004937 ORTHO05D006414 2.5e-74 282.3 177 71.8
unitig_748.g7590 Utricularia gibba HOM05D004937 ORTHO05D006414 9.5e-74 280.4 173 69.4
Peaxi162Scf00394g00019 Petunia axillaris HOM05D004937 ORTHO05D006414 1.2e-73 280.0 173 72.8
Migut.M01330 Erythranthe guttata HOM05D004937 ORTHO05D000904 1.6e-73 279.6 173 72.8
Glyma.07G261700 Glycine max HOM05D004937 ORTHO05D006414 1.6e-73 279.6 177 71.2
Cpa.g.sc152.26 Carica papaya HOM05D004937 ORTHO05D006414 2.8e-73 278.9 172 73.3
Lj4g0022599 Lotus japonicus HOM05D004937 ORTHO05D006414 4.7e-73 278.1 177 71.8
Nitab4.5_0011734g0010 Nicotiana tabacum HOM05D004937 ORTHO05D006414 6.1e-73 277.7 177 72.9
Phvul.003G080000 Phaseolus vulgaris HOM05D004937 ORTHO05D006414 8.0e-73 277.3 177 71.8
MELO3C002448.2 Cucumis melo HOM05D004937 ORTHO05D006414 1.0e-72 276.9 173 70.5
Peaxi162Scf00307g01425 Petunia axillaris HOM05D004937 ORTHO05D006414 1.0e-72 276.9 173 72.8
ClCG03G004640 Citrullus lanatus HOM05D004937 ORTHO05D006414 1.4e-72 276.6 173 70.5
Aqoxy1G02086 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.8e-72 276.2 177 72.3
PGR042G1615 Punica granatum HOM05D004937 ORTHO05D006414 1.8e-72 276.2 177 73.4
arahy.Tifrunner.gnm1.ann1.L1792D Arachis hypogaea HOM05D004937 ORTHO05D006414 3.1e-72 275.4 177 72.3
COL.COLO4_31792 Corchorus olitorius HOM05D004937 ORTHO05D006414 3.1e-72 275.4 173 75.1
Medtr4g132300 Medicago truncatula HOM05D004937 ORTHO05D006414 4.0e-72 275.0 177 71.8
SalBow8G2768 Salvia bowleyana HOM05D004937 ORTHO05D006414 5.2e-72 274.6 175 72.0
Nitab4.5_0000005g0300 Nicotiana tabacum HOM05D004937 ORTHO05D006414 6.8e-72 274.2 177 72.3
Thecc.06G222700 Theobroma cacao HOM05D004937 ORTHO05D006414 6.8e-72 274.2 177 73.4
CsaV3_1G010670 Cucumis sativus L. HOM05D004937 ORTHO05D006414 1.2e-71 273.5 173 70.5
PGSC0003DMG400019871 Solanum tuberosum HOM05D004937 ORTHO05D006414 2.0e-71 272.7 177 70.1
Eucgr.D01342 Eucalyptus grandis HOM05D004937 ORTHO05D006414 2.6e-71 272.3 173 72.3
Sopen02g011270 Solanum pennellii HOM05D004937 ORTHO05D006414 2.6e-71 272.3 177 70.1
Hund23457 Selenicereus undatus HOM05D004937 ORTHO05D006414 3.4e-71 271.9 172 71.5
VMungo1215G2760 Vigna mungo HOM05D004937 ORTHO05D006414 3.4e-71 271.9 168 72.6
Solyc02g032870.4 Solanum lycopersicum HOM05D004937 ORTHO05D006414 4.4e-71 271.6 177 70.1
PSO675G1521 Papaver somniferum HOM05D004937 ORTHO05D006414 7.5e-71 270.8 181 70.2
Haze_06812 Corylus avellana HOM05D004937 ORTHO05D006414 9.8e-71 270.4 168 73.8
PSO541G5924 Papaver somniferum HOM05D004937 ORTHO05D006414 1.3e-70 270.0 181 70.2
TPR.G22185 Trifolium pratense HOM05D004937 ORTHO05D006414 1.3e-70 270.0 177 71.8
HPP92_001597 Vanilla planifolia HOM05D004937 ORTHO05D006414 2.2e-70 269.2 173 70.5
EL10Ac8g20076 Beta vulgaris HOM05D004937 ORTHO05D006414 2.9e-70 268.9 177 68.9
CDE02G2441 Ceratophyllum demersum HOM05D004937 ORTHO05D006414 3.7e-70 268.5 174 69.0
Lalb_Chr12g0196051 Lupinus albus HOM05D004937 ORTHO05D006414 6.4e-70 267.7 176 69.3
Psat4g006200 Pisum sativum HOM05D004937 ORTHO05D006414 6.4e-70 267.7 173 71.7
ATR0794G089 Amborella trichopoda HOM05D004937 ORTHO05D006414 8.3e-70 267.3 174 67.8
HPP92_001591 Vanilla planifolia HOM05D004937 ORTHO05D006414 8.3e-70 267.3 173 69.9
Gohir.D06G214000 Gossypium hirsutum HOM05D004937 ORTHO05D006414 2.4e-69 265.8 178 69.1
Gorai.010G252100 Gossypium raimondii HOM05D004937 ORTHO05D006414 2.4e-69 265.8 178 69.1
PSO675G7903 Papaver somniferum HOM05D004937 ORTHO05D006414 2.4e-69 265.8 181 69.6
Sed0026378 Sechium edule HOM05D004937 ORTHO05D006414 4.1e-69 265.0 173 68.8
Zm00001eb048580 Zea mays HOM05D004937 ORTHO05D006414 5.4e-69 264.6 176 67.0
Sed0013617 Sechium edule HOM05D004937 ORTHO05D006414 7.0e-69 264.2 173 68.2
THA.LOC104809500 Tarenaya hassleriana HOM05D004937 ORTHO05D006414 1.6e-68 263.1 173 70.5
Gohir.A06G207300 Gossypium hirsutum HOM05D004937 ORTHO05D006414 2.7e-68 262.3 178 68.5
Dinv20060 Davidia involucrata HOM05D004937 ORTHO05D006414 3.5e-68 261.9 177 70.1
AUR62012723 Chenopodium quinoa HOM05D004937 ORTHO05D006414 7.8e-68 260.8 177 68.9
PSO017G1772 Papaver somniferum HOM05D004937 ORTHO05D006414 7.8e-68 260.8 179 68.7
QL05p072858 Quercus lobata HOM05D004937 ORTHO05D006414 7.8e-68 260.8 176 69.9
PSO541G2704 Papaver somniferum HOM05D004937 ORTHO05D006414 1.3e-67 260.0 181 68.0
Os12g0414900 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.7e-67 259.6 173 69.4
AUR62021933 Chenopodium quinoa HOM05D004937 ORTHO05D006414 2.3e-67 259.2 173 69.9
arahy.Tifrunner.gnm1.ann1.VWCB5J Arachis hypogaea HOM05D004937 ORTHO05D006414 3.0e-67 258.8 177 70.1
Zm00001eb043220 Zea mays HOM05D004937 ORTHO05D006414 6.6e-67 257.7 175 67.4
AL1G22990 Arabidopsis lyrata HOM05D004937 ORTHO05D006414 8.6e-67 257.3 173 67.1
HanXRQChr15g0470651 Helianthus annuus HOM05D004937 ORTHO05D006414 8.6e-67 257.3 173 67.6
BcaB08g37429 Brassica carinata HOM05D004937 ORTHO05D006414 1.1e-66 256.9 173 67.1
ECA236G0630 Erigeron canadensis HOM05D004937 ORTHO05D006414 1.1e-66 256.9 177 66.7
SHI02217 Sapria himalayana HOM05D004937 ORTHO05D006414 1.1e-66 256.9 174 67.8
Thhalv10006713m.g Eutrema salsugineum HOM05D004937 ORTHO05D000904 1.5e-66 256.5 173 67.6
Ah.14g087960 Amaranthus hybridus HOM05D004937 ORTHO05D006414 3.3e-66 255.4 173 67.6
BraA09t41776Z Brassica rapa HOM05D004937 ORTHO05D006414 5.6e-66 254.6 173 66.5
Sp1g10430 Schrenkiella parvula HOM05D004937 ORTHO05D006414 5.6e-66 254.6 173 65.9
AT1G11800 Arabidopsis thaliana HOM05D004937 ORTHO05D006414 9.5e-66 253.8 173 67.1
C08p47960 Brassica napus HOM05D004937 ORTHO05D006414 1.6e-65 253.1 173 66.5
BolC8t52333H Brassica oleracea HOM05D004937 ORTHO05D006414 1.6e-65 253.1 173 66.5
Dinv13907 Davidia involucrata HOM05D004937 ORTHO05D006414 1.6e-65 253.1 171 65.5
Carub.0001s1147 Capsella rubella HOM05D004937 ORTHO05D006414 3.6e-65 251.9 173 65.9
SEGI_33731 Sequoiadendron giganteum HOM05D004937 ORTHO05D006414 6.2e-65 251.1 173 66.5
BcaC07g41758 Brassica carinata HOM05D004937 ORTHO05D006414 1.1e-64 250.4 171 66.7
QL05p072840 Quercus lobata HOM05D004937 ORTHO05D006414 1.4e-64 250.0 176 65.3
CARHR012140 Cardamine hirsuta HOM05D004937 ORTHO05D006414 2.3e-64 249.2 173 67.1
Ca_21076_v3 Cicer arietinum L. HOM05D004937 ORTHO05D006414 1.2e-63 246.9 159 73.0
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 4.4e-63 245.0 167 65.9
Lsat_1_v5_gn_7_16360 Lactuca sativa HOM05D004937 ORTHO05D006414 2.2e-62 242.7 178 63.5
HanXRQChr05g0129391 Helianthus annuus HOM05D004937 ORTHO05D006414 2.9e-62 242.3 175 64.0
Aa31LG1G2970 Aethionema arabicum HOM05D004937 ORTHO05D006414 8.3e-62 240.7 173 63.0
Migut.M01331 Erythranthe guttata HOM05D004937 ORTHO05D006414 1.4e-61 240.0 176 63.6
Pp3c20_16850 Physcomitrium patens HOM05D004937 ORTHO05D006414 6.0e-60 234.6 173 63.6
Potri.004G010900 Populus trichocarpa HOM05D004937 ORTHO05D006414 1.5e-58 229.9 173 64.7
Mapoly0028s0073 Marchantia polymorpha HOM05D004937 ORTHO05D006414 6.2e-57 224.6 173 60.1
CBR_g38366 Chara braunii HOM05D004937 ORTHO05D006414 3.1e-56 222.2 173 60.1
Dinv13906 Davidia involucrata HOM05D004937 ORTHO05D006414 8.9e-56 220.7 141 70.2
AagrBONN_evm.TU.Sc2ySwM_368.2060 Anthoceros agrestis HOM05D004937 ORTHO05D006414 1.5e-55 219.9 173 60.7
QL05p072848 Quercus lobata HOM05D004937 ORTHO05D006414 1.3e-54 216.9 139 69.1
SMO361G0593 Selaginella moellendorffii HOM05D004937 ORTHO05D006414 4.1e-53 211.8 173 61.3
CSS0029720 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.2e-49 200.3 173 57.8
Aqoxy3G03726 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 6.2e-49 198.0 178 55.1
BcaB08g37427 Brassica carinata HOM05D004937 ORTHO05D006414 2.4e-48 196.1 174 54.6
HPP92_014181 Vanilla planifolia HOM05D004937 ORTHO05D006414 5.2e-48 194.9 177 54.8
CSS0048087 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.9e-45 186.4 173 54.3
Aqoxy4G00762 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 7.1e-45 184.5 177 53.1
BcaB08g37425 Brassica carinata HOM05D004937 ORTHO05D006414 8.7e-43 177.6 133 61.7
Dinv13905 Davidia involucrata HOM05D004937 ORTHO05D006414 7.3e-42 174.5 97 80.4
Mapoly0074s0008 Marchantia polymorpha HOM05D004937 ORTHO05D006414 2.6e-31 139.4 173 43.9
Aqoxy5G03390 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 5.8e-31 138.3 124 52.4
Lj2C267G4 Lonicera japonica HOM05D004937 ORTHO05D006414 7.6e-31 137.9 98 62.2
AagrBONN_evm.TU.Sc2ySwM_368.2061 Anthoceros agrestis HOM05D004937 ORTHO05D006414 5.6e-26 121.7 119 49.6
PRCOL_00004553 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 1.3e-25 120.6 188 37.8
Cre06.g305050 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 1.5e-23 113.6 170 38.2
MCO11G820 Micromonas commoda HOM05D004937 ORTHO05D006414 8.4e-22 107.8 174 37.9
PRCOL_00006577 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 3.0e-19 99.4 197 34.0
PGSC0003DMG400026496 Solanum tuberosum HOM05D004937 ORTHO05D006414 1.5e-15 87.0 49 77.6
Cre06.g305250 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 8.4e-14 81.3 164 31.1
Psat6g178560 Pisum sativum HOM05D004937 ORTHO05D006414 1.6e-12 77.0 62 59.7
Os07g0510800 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 2.2e-09 66.6 65 49.2
Os07g0510300 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 2.4e-08 63.2 104 35.6


User provided reference genes

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