Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.9e-69 265.0 124 100.0
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 7.1e-68 260.4 124 98.4
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.7e-67 258.5 124 96.8
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.1e-55 219.9 107 97.2
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.4e-42 176.4 86 97.7
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 2.0e-38 162.5 101 77.2
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 1.0e-37 160.2 86 86.0
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 2.9e-37 158.7 96 79.2
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 8.5e-37 157.1 86 86.0
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 3.6e-35 151.8 85 82.4
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 4.7e-35 151.4 86 81.4
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 6.1e-35 151.0 101 65.3
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 1.0e-34 150.2 85 80.0
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 2.3e-34 149.1 85 78.8
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 3.9e-34 148.3 88 78.4
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 3.9e-34 148.3 89 71.9
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 2.0e-33 146.0 88 76.1
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 5.7e-33 144.4 86 76.7
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 7.4e-33 144.1 101 61.4
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 1.3e-32 143.3 86 75.6
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 1.3e-32 143.3 86 77.9
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 1.3e-32 143.3 86 74.4
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 1.7e-32 142.9 101 65.3
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 1.7e-32 142.9 88 76.1
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 2.2e-32 142.5 88 76.1
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 2.2e-32 142.5 86 75.6
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 2.2e-32 142.5 86 73.3
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 2.2e-32 142.5 86 74.4
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 2.8e-32 142.1 101 64.4
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 2.8e-32 142.1 86 74.4
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 3.7e-32 141.7 101 64.4
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 3.7e-32 141.7 101 65.3
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 3.7e-32 141.7 86 72.1
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 3.7e-32 141.7 86 72.1
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 3.7e-32 141.7 86 72.1
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 4.8e-32 141.4 88 65.9
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 4.8e-32 141.4 86 72.1
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 4.8e-32 141.4 86 72.1
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 4.8e-32 141.4 86 72.1
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 6.3e-32 141.0 88 71.6
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 6.3e-32 141.0 85 75.3
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 6.3e-32 141.0 85 77.6
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 6.3e-32 141.0 93 67.7
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 6.3e-32 141.0 91 71.4
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 6.3e-32 141.0 91 71.4
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 8.2e-32 140.6 86 75.6
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 1.1e-31 140.2 101 64.4
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.1e-31 140.2 86 73.3
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 1.1e-31 140.2 113 61.9
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 1.1e-31 140.2 86 73.3
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 1.4e-31 139.8 101 63.4
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 1.4e-31 139.8 101 63.4
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 1.4e-31 139.8 101 64.4
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 1.4e-31 139.8 86 76.7
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 1.8e-31 139.4 86 74.4
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.8e-31 139.4 86 70.9
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.8e-31 139.4 86 70.9
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 1.8e-31 139.4 85 72.9
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 1.8e-31 139.4 101 66.3
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 2.4e-31 139.0 86 73.3
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 2.4e-31 139.0 101 62.4
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 2.4e-31 139.0 129 54.3
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 2.4e-31 139.0 103 64.1
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 3.1e-31 138.7 88 72.7
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 3.1e-31 138.7 88 71.6
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 4.1e-31 138.3 86 72.1
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 4.1e-31 138.3 85 78.8
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 5.3e-31 137.9 86 72.1
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 7.0e-31 137.5 102 64.7
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 7.0e-31 137.5 129 54.3
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 7.0e-31 137.5 110 65.5
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 9.1e-31 137.1 113 59.3
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 9.1e-31 137.1 85 72.9
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 1.2e-30 136.7 85 70.6
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 1.6e-30 136.3 129 54.3
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 2.0e-30 136.0 119 55.5
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 2.0e-30 136.0 88 69.3
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 2.0e-30 136.0 88 69.3
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 2.0e-30 136.0 85 72.9
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 2.6e-30 135.6 86 70.9
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 2.6e-30 135.6 86 70.9
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 4.5e-30 134.8 85 70.6
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 5.9e-30 134.4 88 68.2
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 7.7e-30 134.0 88 65.9
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 7.7e-30 134.0 85 72.9
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 1.0e-29 133.7 86 70.9
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.3e-29 133.3 86 68.6
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 1.3e-29 133.3 129 54.3
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 1.3e-29 133.3 129 54.3
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 1.3e-29 133.3 85 68.2
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 1.7e-29 132.9 86 68.6
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 1.7e-29 132.9 88 67.0
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 1.7e-29 132.9 84 72.6
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.7e-29 132.9 88 64.8
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 2.9e-29 132.1 85 70.6
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 3.8e-29 131.7 85 71.8
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.5e-28 129.8 86 66.3
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 4.2e-28 128.3 84 70.2
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 9.4e-28 127.1 98 62.2
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 1.2e-27 126.7 97 61.9
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 3.6e-27 125.2 85 68.2
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 4.7e-27 124.8 88 68.2
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 3.0e-26 122.1 88 62.5
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 8.8e-26 120.6 97 58.8
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 1.5e-25 119.8 103 55.3
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 2.6e-25 119.0 98 63.3
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 1.7e-24 116.3 102 54.9
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 3.7e-24 115.2 78 62.8
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.6e-22 109.8 67 68.7
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 1.6e-22 109.8 93 54.8
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 2.7e-22 109.0 93 57.0
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 3.5e-22 108.6 86 60.5
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.5e-22 108.6 67 68.7
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.0e-21 107.1 67 67.2
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 1.3e-21 106.7 93 53.8
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 2.2e-21 105.9 92 54.3
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 2.2e-21 105.9 68 75.0
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 6.5e-21 104.4 101 47.5
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 8.5e-21 104.0 88 47.7
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 2.5e-20 102.4 70 68.6
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 9.4e-20 100.5 114 48.2
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 9.4e-20 100.5 75 58.7
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 6.1e-19 97.8 64 68.8
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 8.0e-19 97.4 85 55.3
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 1.0e-18 97.1 88 50.0
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 2.3e-18 95.9 88 47.7
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 1.3e-16 90.1 71 62.0
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 1.7e-16 89.7 85 56.5
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 2.8e-16 89.0 94 48.9
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 1.8e-15 86.3 52 67.3
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 2.4e-15 85.9 53 64.2
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 3.1e-15 85.5 88 43.2
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 7.0e-15 84.3 73 56.2
Cpa.g.sc437.1 Carica papaya HOM05D004561 ORTHO05D005315 5.9e-14 81.3 54 64.8
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 5.9e-14 81.3 59 64.4
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 1.3e-13 80.1 49 73.5
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 1.7e-13 79.7 43 79.1
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 5.0e-13 78.2 43 81.4
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 1.2e-11 73.6 50 66.0
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 2.3e-10 69.3 86 37.2
Ca_17309_v3 Cicer arietinum L. HOM05D002967 ORTHO05D003281 4.4e-09 65.1 61 49.2
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 2.4e-07 59.3 109 29.4
FvH4_5g18980 Fragaria vesca HOM05D004561 ORTHO05D005315 3.1e-07 58.9 36 77.8
Cc05_g02560 Coffea canephora HOM05D004561 ORTHO05D005315 2.7e-06 55.8 35 68.6


User provided reference genes

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