Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005044 Camellia sinensis var. sinensis HOM05D007691 ORTHO05D008758 4.5e-49 197.6 99 100.0
Actinidia03917 Actinidia chinensis HOM05D007691 ORTHO05D008758 2.2e-27 125.6 95 70.5
Actinidia37824 Actinidia chinensis HOM05D007691 ORTHO05D008758 3.9e-24 114.8 95 64.2
Dinv25036 Davidia involucrata HOM05D007691 ORTHO05D008758 5.0e-24 114.4 94 68.1
vmacro07648 Vaccinium macrocarpon HOM05D007691 ORTHO05D008758 5.0e-24 114.4 93 65.6
Actinidia06207 Actinidia chinensis HOM05D007691 ORTHO05D008758 9.5e-23 110.2 96 64.6
Dinv13794 Davidia involucrata HOM05D007691 ORTHO05D008758 8.0e-22 107.1 96 62.5
Hma1.2p1_0075F.1_g039350 Hydrangea macrophylla HOM05D007691 ORTHO05D008758 3.4e-20 101.7 96 64.6
Ciclev10022756m.g Citrus clementina HOM05D007691 ORTHO05D008758 3.2e-18 95.1 97 55.7
TAR633G0734 Trochodendron aralioides HOM05D007691 ORTHO05D008758 2.0e-17 92.4 96 54.2
Manes.08G152200 Manihot esculenta HOM05D007691 ORTHO05D008758 2.7e-17 92.0 97 52.6
QL07p017243 Quercus lobata HOM05D007691 ORTHO05D008758 4.6e-17 91.3 94 56.4
Manes.09G136400 Manihot esculenta HOM05D007691 ORTHO05D008758 6.6e-16 87.4 99 51.5
Thecc.05G240900 Theobroma cacao HOM05D007691 ORTHO05D008758 5.6e-15 84.3 98 53.1
Gohir.D11G240200 Gossypium hirsutum HOM05D007691 ORTHO05D008758 1.2e-14 83.2 102 55.9
Gorai.007G253600 Gossypium raimondii HOM05D007691 ORTHO05D008758 1.2e-14 83.2 102 55.9
Duzib128G0235 Durio zibethinus HOM05D007691 ORTHO05D008758 8.1e-14 80.5 101 48.5
DCAR_020650 Daucus carota HOM05D007691 ORTHO05D008758 1.1e-13 80.1 80 56.2
COL.COLO4_20083 Corchorus olitorius HOM05D007691 ORTHO05D008758 1.4e-13 79.7 101 51.5
Gohir.A11G227700 Gossypium hirsutum HOM05D007691 ORTHO05D008758 1.4e-13 79.7 96 54.2
Cfa017725 Carpinus fangiana HOM05D007691 ORTHO05D008758 3.1e-13 78.6 86 50.0
Haze_20399 Corylus avellana HOM05D007691 ORTHO05D008758 4.0e-13 78.2 86 50.0
Potri.013G066600 Populus trichocarpa HOM05D007691 ORTHO05D008758 4.0e-13 78.2 87 54.0
Sabra13G0058100 Salix brachista HOM05D007691 ORTHO05D008758 4.0e-13 78.2 95 50.5
Lalb_Chr14g0364941 Lupinus albus HOM05D007691 ORTHO05D008758 8.9e-13 77.0 95 49.5
MD14G1010200 Malus domestica HOM05D007691 ORTHO05D008758 8.9e-13 77.0 94 47.9
Lalb_Chr02g0157501 Lupinus albus HOM05D007691 ORTHO05D008758 1.5e-12 76.3 96 49.0
Prupe.7G016300 Prunus persica HOM05D007691 ORTHO05D008758 1.5e-12 76.3 96 47.9
Sed0014810 Sechium edule HOM05D007691 ORTHO05D008758 1.5e-12 76.3 95 47.4
Eucgr.A02145 Eucalyptus grandis HOM05D007691 ORTHO05D008758 5.8e-12 74.3 104 50.0
MD12G1012400 Malus domestica HOM05D007691 ORTHO05D008758 5.8e-12 74.3 91 48.4
Dinv25035 Davidia involucrata HOM05D039163 ORTHO05D008758 1.7e-11 72.8 110 42.7
Nn6g32394 Nelumbo nucifera HOM05D007691 ORTHO05D008758 2.2e-11 72.4 94 47.9
Lalb_Chr21g0317311 Lupinus albus HOM05D007691 ORTHO05D008758 4.9e-11 71.2 99 47.5
Manes.13G143001 Manihot esculenta HOM05D007691 ORTHO05D008758 4.9e-11 71.2 96 50.0
arahy.Tifrunner.gnm1.ann1.5EZ2U4 Arachis hypogaea HOM05D007691 ORTHO05D008758 6.4e-11 70.9 102 45.1
DCAR_013492 Daucus carota HOM05D007691 ORTHO05D008758 6.4e-11 70.9 89 47.2
ClCG10G015920 Citrullus lanatus HOM05D007691 ORTHO05D008758 1.1e-10 70.1 85 49.4
CsaV3_3G040570 Cucumis sativus L. HOM05D007691 ORTHO05D008758 1.4e-10 69.7 86 51.2
Sed0006259 Sechium edule HOM05D007691 ORTHO05D008758 1.4e-10 69.7 85 48.2
Lj1g0027070 Lotus japonicus HOM05D007691 ORTHO05D008758 1.9e-10 69.3 86 47.7
arahy.Tifrunner.gnm1.ann1.K1K8SL Arachis hypogaea HOM05D007691 ORTHO05D008758 3.2e-10 68.6 99 49.5
TAR623G0909 Trochodendron aralioides HOM05D007691 ORTHO05D008758 4.1e-10 68.2 67 55.2
arahy.Tifrunner.gnm1.ann1.MY48C3 Arachis hypogaea HOM05D007691 ORTHO05D008758 7.1e-10 67.4 99 48.5
PGSC0003DMG400010130 Solanum tuberosum HOM05D018532 ORTHO05D008758 7.1e-10 67.4 94 42.6
arahy.Tifrunner.gnm1.ann1.F64EX1 Arachis hypogaea HOM05D007691 ORTHO05D008758 9.2e-10 67.0 99 48.5
Sopen03g029460 Solanum pennellii HOM05D018532 ORTHO05D008758 9.2e-10 67.0 95 44.2
Glyma.19G118700 Glycine max HOM05D007691 ORTHO05D008758 2.1e-09 65.9 94 41.5
Nitab4.5_0007090g0010 Nicotiana tabacum HOM05D018532 ORTHO05D008758 2.1e-09 65.9 95 43.2
Duzib128G0872 Durio zibethinus HOM05D014272 ORTHO05D008758 3.5e-09 65.1 101 42.6
MD14G1010100 Malus domestica HOM05D007691 ORTHO05D008758 3.5e-09 65.1 97 46.4
Gohir.A08G220400 Gossypium hirsutum HOM05D007691 ORTHO05D008758 4.6e-09 64.7 97 38.1
SalBow1G6856 Salvia bowleyana HOM05D007691 ORTHO05D008758 6.0e-09 64.3 75 52.0
Phvul.001G106900 Phaseolus vulgaris HOM05D007691 ORTHO05D008758 1.0e-08 63.5 91 45.1
Oeu052775.1 Olea europaea HOM05D026374 ORTHO05D008758 3.9e-08 61.6 96 45.8
Peaxi162Scf00358g00029 Petunia axillaris HOM05D018532 ORTHO05D008758 3.9e-08 61.6 97 40.2
Cc04_g08420 Coffea canephora HOM05D007691 ORTHO05D008758 5.1e-08 61.2 93 43.0
MBI19_g09311_MAGBIO Magnolia biondii HOM05D007691 ORTHO05D008758 5.1e-08 61.2 96 43.8
Sc15g0006900 Simmondsia chinensis HOM05D007691 ORTHO05D008758 5.1e-08 61.2 96 43.8
MBI19_g38148_MAGBIO Magnolia biondii HOM05D007691 ORTHO05D008758 1.5e-07 59.7 96 42.7
MD12G1012300 Malus domestica HOM05D007691 ORTHO05D008758 1.5e-07 59.7 93 43.0
Gorai.004G252600 Gossypium raimondii HOM05D007691 ORTHO05D008758 4.3e-07 58.2 94 40.4
Lj1g0000066 Lotus japonicus HOM05D017020 ORTHO05D016669 4.3e-07 58.2 97 41.2
Lj2g0016909 Lotus japonicus HOM05D007691 ORTHO05D008758 4.3e-07 58.2 96 42.7
Sabra19G0050800 Salix brachista HOM05D007691 ORTHO05D008758 4.3e-07 58.2 125 40.0
Oeu052778.1 Olea europaea HOM05D026374 ORTHO05D008758 5.6e-07 57.8 96 42.7
Sc07g0007580 Simmondsia chinensis HOM05D007691 ORTHO05D008758 5.6e-07 57.8 89 46.1
Glyma.03G007400 Glycine max HOM05D007691 ORTHO05D008758 7.3e-07 57.4 87 42.5
Hma1.2p1_0636F.1_g193350 Hydrangea macrophylla HOM05D007691 ORTHO05D008758 7.3e-07 57.4 45 62.2
Oeu063715.1 Olea europaea HOM05D046649 ORTHO05D008758 7.3e-07 57.4 87 46.0
Sed0016719 Sechium edule HOM05D007106 ORTHO05D007770 7.3e-07 57.4 79 41.8
Medtr7g086770 Medicago truncatula HOM05D007691 ORTHO05D008758 9.5e-07 57.0 90 41.1
TPR.G34787 Trifolium pratense HOM05D007691 ORTHO05D008758 9.5e-07 57.0 96 40.6
arahy.Tifrunner.gnm1.ann1.N1UETT Arachis hypogaea HOM05D007691 ORTHO05D008758 1.6e-06 56.2 90 42.2
PGR042G3671 Punica granatum HOM05D026603 ORTHO05D008758 2.8e-06 55.5 102 39.2
Gorai.001G253300 Gossypium raimondii HOM05D014272 ORTHO05D047925 3.6e-06 55.1 107 41.1
arahy.Tifrunner.gnm1.ann1.BJ9957 Arachis hypogaea HOM05D007691 ORTHO05D008758 4.7e-06 54.7 90 41.1
Glyma.19G117900 Glycine max HOM05D017020 ORTHO05D016669 4.7e-06 54.7 94 40.4
Gohir.D07G218800 Gossypium hirsutum HOM05D014272 ORTHO05D047925 4.7e-06 54.7 107 41.1
Nitab4.5_0002028g0030 Nicotiana tabacum HOM05D018532 ORTHO05D008758 4.7e-06 54.7 94 39.4
ClCG04G012220 Citrullus lanatus HOM05D007106 ORTHO05D007770 8.1e-06 53.9 79 40.5
Dinv16657 Davidia involucrata HOM05D007106 ORTHO05D007770 8.1e-06 53.9 84 39.3
Prupe.7G016200 Prunus persica HOM05D007691 ORTHO05D008758 8.1e-06 53.9 89 46.1
Hund15081 Selenicereus undatus HOM05D036338 ORTHO05D008758 8.1e-06 53.9 91 41.8


User provided reference genes

Program Settings