Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.5e-228 795.8 408 100.0
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.4e-208 729.6 405 93.1
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 4.0e-192 674.9 404 84.4
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 9.5e-186 653.7 400 82.5
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 6.2e-185 651.0 398 81.9
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 9.8e-183 643.7 401 81.0
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 9.8e-183 643.7 393 82.4
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 8.3e-182 640.6 403 80.1
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 1.1e-181 640.2 402 77.9
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 1.1e-181 640.2 404 79.0
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 1.4e-181 639.8 396 79.8
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 1.9e-181 639.4 407 79.9
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 3.2e-181 638.6 417 78.9
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 1.6e-180 636.3 395 79.2
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 3.5e-180 635.2 400 81.0
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 6.0e-180 634.4 402 79.4
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 1.7e-179 632.9 397 78.3
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 3.3e-178 628.6 402 78.6
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 4.3e-178 628.2 402 77.6
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 5.6e-178 627.9 402 77.6
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 3.6e-177 625.2 396 80.3
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 8.1e-177 624.0 402 77.9
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 8.1e-177 624.0 405 78.8
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 1.1e-176 623.6 402 77.4
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 1.4e-176 623.2 397 78.1
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 2.3e-176 622.5 402 77.9
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 3.1e-176 622.1 402 77.4
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 6.8e-176 620.9 403 77.7
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 8.9e-176 620.5 396 78.3
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 1.5e-175 619.8 402 78.1
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.0e-175 619.4 403 77.4
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 4.4e-175 618.2 404 76.5
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 4.4e-175 618.2 407 76.4
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 4.4e-175 618.2 395 77.7
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 5.8e-175 617.8 396 78.0
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 1.7e-174 616.3 402 75.6
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 2.2e-174 615.9 404 77.0
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 2.9e-174 615.5 395 77.5
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.7e-174 615.1 403 77.4
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 4.9e-174 614.8 395 77.5
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 1.9e-173 612.8 405 76.8
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 2.4e-173 612.5 402 77.4
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 2.4e-173 612.5 402 77.4
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 3.2e-173 612.1 402 75.9
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 3.2e-173 612.1 407 76.2
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 7.1e-173 610.9 402 77.6
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 9.2e-173 610.5 405 76.8
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 2.7e-172 609.0 404 77.2
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 6.0e-172 607.8 399 75.4
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 6.0e-172 607.8 420 74.3
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.0e-171 607.1 405 76.0
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 3.0e-171 605.5 433 71.6
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 5.1e-171 604.7 402 75.4
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 1.1e-170 603.6 395 76.2
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 1.1e-170 603.6 395 76.5
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 1.5e-170 603.2 399 76.2
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 2.5e-170 602.4 401 74.8
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 4.3e-170 601.7 400 74.2
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 5.6e-170 601.3 401 74.6
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 5.6e-170 601.3 394 76.1
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 4.7e-169 598.2 394 76.4
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 4.7e-169 598.2 399 74.7
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 6.2e-169 597.8 401 74.1
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 8.1e-169 597.4 401 73.6
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 1.4e-168 596.7 394 75.9
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 1.8e-168 596.3 400 73.8
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 3.1e-168 595.5 401 74.3
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 5.2e-168 594.7 400 73.8
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 6.8e-168 594.3 397 74.1
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 8.9e-168 594.0 402 73.4
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 8.9e-168 594.0 402 74.1
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 8.9e-168 594.0 395 74.2
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 1.5e-167 593.2 402 73.4
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 2.6e-167 592.4 401 74.1
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 2.6e-167 592.4 402 73.1
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 2.6e-167 592.4 402 73.1
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 4.4e-167 591.7 401 73.1
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 7.6e-167 590.9 401 73.1
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 9.9e-167 590.5 402 72.9
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 1.3e-166 590.1 400 74.5
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 1.7e-166 589.7 401 73.1
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 4.9e-166 588.2 397 74.3
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 8.4e-166 587.4 401 73.8
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 8.4e-166 587.4 401 72.8
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 8.4e-166 587.4 399 73.9
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 1.4e-165 586.6 401 73.8
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 7.1e-165 584.3 405 73.3
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 1.2e-164 583.6 403 72.7
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 1.2e-164 583.6 412 71.1
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 2.7e-164 582.4 403 73.7
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 3.5e-164 582.0 406 72.4
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 4.6e-164 581.6 396 72.5
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 1.7e-163 579.7 401 72.3
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 1.1e-162 577.0 395 71.9
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 1.1e-162 577.0 385 74.5
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 7.3e-162 574.3 400 73.8
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 9.6e-162 573.9 407 72.5
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 2.1e-161 572.8 396 72.2
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 6.2e-161 571.2 404 71.8
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 6.2e-161 571.2 404 71.8
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 1.1e-160 570.5 402 71.9
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 1.8e-160 569.7 380 75.3
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 5.8e-159 564.7 402 71.6
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 1.3e-158 563.5 403 73.0
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 4.2e-157 558.5 398 70.1
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 1.2e-156 557.0 402 71.1
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 1.3e-155 553.5 367 75.2
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 2.3e-155 552.7 401 71.6
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 3.0e-155 552.4 400 70.5
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 9.6e-154 547.4 395 70.4
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 3.6e-153 545.4 425 68.0
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 8.1e-153 544.3 549 54.1
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.4e-152 542.7 402 70.4
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 4.0e-152 542.0 402 68.9
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 1.5e-151 540.0 408 66.9
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 1.5e-151 540.0 397 70.0
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 3.4e-151 538.9 358 75.1
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 9.9e-151 537.3 395 69.9
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 8.4e-150 534.3 400 68.5
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 1.1e-149 533.9 399 68.9
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 1.2e-148 530.4 489 57.7
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 1.8e-147 526.6 396 66.4
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 2.3e-147 526.2 429 64.8
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 2.3e-147 526.2 399 66.7
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 3.3e-146 522.3 394 67.8
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 4.3e-146 521.9 463 61.1
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 9.6e-146 520.8 404 63.4
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 4.8e-145 518.5 403 66.5
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 5.8e-143 511.5 402 68.4
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 2.9e-142 509.2 395 68.6
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 4.6e-140 501.9 414 61.1
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 2.5e-130 469.5 428 57.5
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 5.7e-130 468.4 428 57.5
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 4.1e-128 462.2 390 59.2
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 9.4e-125 451.1 409 60.9
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.6e-124 448.7 283 78.8
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 3.4e-119 432.6 275 77.5
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 3.7e-113 412.5 427 51.8
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 3.3e-106 389.4 263 74.9
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 3.3e-106 389.4 268 74.6
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.3e-105 387.5 253 78.3
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 5.2e-99 365.5 236 77.1
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 1.3e-97 360.9 273 70.3
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 6.1e-84 315.5 211 75.4
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 1.0e-83 314.7 252 67.1
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.2e-82 311.2 212 76.4
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 1.7e-78 297.4 209 71.8
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.7e-78 297.4 183 78.1
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 4.1e-72 276.2 204 69.6
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 8.3e-65 251.9 200 63.0
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 5.8e-58 229.2 401 36.2
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 1.0e-54 218.4 137 75.2
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 6.6e-54 215.7 114 93.9
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 9.6e-53 211.8 134 75.4
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 1.5e-50 204.5 153 69.3
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 7.6e-50 202.2 139 72.7
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 2.9e-49 200.3 265 47.9
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 6.4e-49 199.1 114 89.5
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 8.4e-41 172.2 147 59.2
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 9.0e-35 152.1 139 53.2
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 1.7e-33 147.9 187 48.1
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.2e-33 147.5 96 77.1
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 1.0e-30 138.7 214 41.1
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 2.8e-28 130.6 77 87.0
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 7.6e-26 122.5 65 96.9
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 2.9e-25 120.6 77 77.9
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 6.5e-25 119.4 65 93.8
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.9e-24 117.9 65 92.3
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 1.9e-24 117.9 67 83.6
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 2.1e-23 114.4 137 52.6
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 1.0e-22 112.1 63 82.5
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.9e-21 107.8 77 77.9
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 2.1e-20 104.4 186 38.2
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 6.9e-19 99.4 65 76.9
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 5.5e-16 89.7 46 91.3
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 6.5e-09 66.2 37 89.2
HanXRQChr06g0180401 Helianthus annuus HOM05D003643 ORTHO05D005001 1.4e-08 65.1 38 71.1
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 2.1e-07 61.2 99 33.3


User provided reference genes

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