Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004996 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 1.4e-100 369.8 215 100.0
CSS0030073 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 2.5e-97 359.0 215 98.6
Dinv44226 Davidia involucrata HOM05D002704 ORTHO05D002891 2.7e-46 189.5 196 61.7
GSVIVG01013547001 Vitis vinifera HOM05D002704 ORTHO05D002891 7.8e-46 188.0 241 52.7
Actinidia17222 Actinidia chinensis HOM05D002704 ORTHO05D002891 9.5e-44 181.0 206 56.3
Thecc.04G181700 Theobroma cacao HOM05D002704 ORTHO05D002891 1.6e-43 180.3 203 55.2
QL10p046538 Quercus lobata HOM05D002704 ORTHO05D002891 1.1e-42 177.6 198 56.6
Duzib268G0568 Durio zibethinus HOM05D002704 ORTHO05D002891 1.4e-42 177.2 149 66.4
Duzib268G0864 Durio zibethinus HOM05D002704 ORTHO05D002891 1.4e-42 177.2 149 65.8
CiPaw.01G106200 Carya illinoinensis HOM05D002704 ORTHO05D002891 2.3e-42 176.4 202 55.0
Potri.002G231400 Populus trichocarpa HOM05D002704 ORTHO05D002891 2.3e-42 176.4 201 55.7
Actinidia35890 Actinidia chinensis HOM05D002704 ORTHO05D002891 1.5e-41 173.7 236 53.0
COL.COLO4_24351 Corchorus olitorius HOM05D002704 ORTHO05D002891 3.7e-40 169.1 197 52.8
Sabra02G0176600 Salix brachista HOM05D002704 ORTHO05D002891 3.7e-40 169.1 203 52.7
Duzib151G0761 Durio zibethinus HOM05D002704 ORTHO05D002891 4.9e-40 168.7 204 53.9
CiPaw.02G057300 Carya illinoinensis HOM05D002704 ORTHO05D002891 1.1e-39 167.5 200 54.5
Potri.014G150900 Populus trichocarpa HOM05D002704 ORTHO05D002891 1.9e-39 166.8 186 54.8
PSO357G0625 Papaver somniferum HOM05D002704 ORTHO05D002891 1.6e-38 163.7 201 50.2
PGSC0003DMG400021617 Solanum tuberosum HOM05D002704 ORTHO05D002891 1.6e-38 163.7 182 54.4
Hma1.2p1_0429F.1_g151125 Hydrangea macrophylla HOM05D002704 ORTHO05D002891 2.1e-38 163.3 197 55.3
Manes.11G114400 Manihot esculenta HOM05D002704 ORTHO05D002891 2.3e-37 159.8 204 50.5
Manes.04G050300 Manihot esculenta HOM05D002704 ORTHO05D002891 6.6e-37 158.3 157 59.2
Ciclev10023373m.g Citrus clementina HOM05D002704 ORTHO05D002891 1.5e-36 157.1 197 55.8
Sopen09g036400 Solanum pennellii HOM05D002704 ORTHO05D002891 1.6e-35 153.7 154 57.1
Atru.chr3.1657 Acer truncatum HOM05D002704 ORTHO05D002891 2.1e-35 153.3 209 51.7
TAR633G1006 Trochodendron aralioides HOM05D002704 ORTHO05D002891 2.8e-35 152.9 203 50.7
PSO170G1174 Papaver somniferum HOM05D002704 ORTHO05D002891 3.6e-35 152.5 201 48.3
Oeu007224.1 Olea europaea HOM05D002704 ORTHO05D002891 2.3e-34 149.8 166 49.4
Oeu007226.1 Olea europaea HOM05D002704 ORTHO05D002891 2.3e-34 149.8 166 49.4
Gohir.A02G013402 Gossypium hirsutum HOM05D002704 ORTHO05D002891 3.1e-34 149.4 166 57.8
Gorai.005G017900 Gossypium raimondii HOM05D002704 ORTHO05D002891 4.0e-34 149.1 150 60.7
Peaxi162Scf00286g00244 Petunia axillaris HOM05D002704 ORTHO05D002891 4.0e-34 149.1 149 56.4
Prupe.1G182000 Prunus persica HOM05D002704 ORTHO05D002891 8.9e-34 147.9 179 48.6
Oeu006703.1 Olea europaea HOM05D002704 ORTHO05D002891 1.2e-33 147.5 177 53.1
Gohir.D02G014400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 2.0e-33 146.7 151 59.6
Aqoxy2G04081 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 3.4e-33 146.0 151 57.0
Aqoxy6G02333 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 3.4e-33 146.0 151 57.0
MSTRG.24593 Avicennia marina HOM05D002704 ORTHO05D002891 3.4e-33 146.0 152 55.3
Cpa.g.c36743 Carica papaya HOM05D002704 ORTHO05D002891 1.3e-32 144.1 161 53.4
HPP92_023705 Vanilla planifolia HOM05D002704 ORTHO05D002891 1.6e-30 137.1 193 48.2
MBI08_g28697_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 2.1e-30 136.7 187 48.1
Solyc09g098490.4 Solanum lycopersicum HOM05D001811 ORTHO05D001738 4.6e-30 135.6 161 51.6
Sabra15G0066300 Salix brachista HOM05D002704 ORTHO05D002891 2.3e-29 133.3 196 45.9
Zm00001eb411630 Zea mays HOM05D002704 ORTHO05D002891 2.3e-29 133.3 190 44.7
SalBow6G4869 Salvia bowleyana HOM05D002704 ORTHO05D002891 3.0e-29 132.9 140 60.0
Zm00001eb133700 Zea mays HOM05D002704 ORTHO05D002891 1.5e-28 130.6 172 47.7
Os11g0294400 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 1.6e-27 127.1 158 50.0
Dinv22667 Davidia involucrata HOM05D002704 ORTHO05D002891 2.1e-27 126.7 123 60.2
CANSAT78G1882 Cannabis sativa HOM05D002704 ORTHO05D002891 6.2e-27 125.2 235 46.0
Sed0000491 Sechium edule HOM05D002704 ORTHO05D002891 2.4e-26 123.2 207 43.0
Peaxi162Scf00378g00084 Petunia axillaris HOM05D002704 ORTHO05D002891 1.3e-24 117.5 153 52.9
Zm00001eb199020 Zea mays HOM05D002704 ORTHO05D002891 1.3e-24 117.5 154 47.4
ClCG08G004030 Citrullus lanatus HOM05D002704 ORTHO05D002891 1.4e-23 114.0 195 41.0
MBI11_g35640_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 1.4e-23 114.0 187 42.8
Sed0010272 Sechium edule HOM05D002704 ORTHO05D002891 4.2e-23 112.5 162 46.9
CsaV3_6G003190 Cucumis sativus L. HOM05D002704 ORTHO05D002891 2.7e-22 109.8 173 45.1
CDE08G0150 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 5.1e-21 105.5 166 39.2
SEGI_04164 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 9.6e-20 101.3 139 43.9
Os12g0233100 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 4.0e-18 95.9 140 45.7
TWI56G1046 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 6.9e-18 95.1 175 35.4
ATR0782G003 Amborella trichopoda HOM05D002704 ORTHO05D002891 4.5e-17 92.4 130 39.2
Sed0024849 Sechium edule HOM05D002704 ORTHO05D002891 9.9e-17 91.3 133 39.1
SEGI_20858 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 1.3e-16 90.9 187 33.7
CsaV3_2G029650 Cucumis sativus L. HOM05D002704 ORTHO05D002891 2.9e-16 89.7 183 31.7
RcHm_v2.0_Chr4g0408971 Rosa chinensis HOM05D002704 ORTHO05D002891 2.9e-16 89.7 109 58.7
ClCG11G015290 Citrullus lanatus HOM05D002704 ORTHO05D002891 3.8e-16 89.4 158 33.5
ClCG08G011070 Citrullus lanatus HOM05D002704 ORTHO05D002891 4.9e-16 89.0 177 36.2
FAN08G2281 Fragaria x ananassa HOM05D002704 ORTHO05D002891 4.9e-16 89.0 139 37.4
FvH4_5g37370 Fragaria vesca HOM05D002704 ORTHO05D002891 6.4e-16 88.6 158 35.4
FAN13G2774 Fragaria x ananassa HOM05D002704 ORTHO05D002891 6.4e-16 88.6 158 35.4
MELO3C011023.2 Cucumis melo HOM05D002704 ORTHO05D002891 1.1e-15 87.8 187 31.0
Atru.chr13.1197 Acer truncatum HOM05D002704 ORTHO05D002891 1.4e-15 87.4 170 35.3
Aqoxy6G00791 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 1.4e-15 87.4 151 36.4
MELO3C003450.2 Cucumis melo HOM05D002704 ORTHO05D002891 1.9e-15 87.0 148 34.5
MBI05_g19349_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 2.4e-15 86.7 182 32.4
Sed0023198 Sechium edule HOM05D002704 ORTHO05D002891 3.2e-15 86.3 154 31.8
FAN18G1803 Fragaria x ananassa HOM05D002704 ORTHO05D002891 4.2e-15 85.9 158 34.8
Hund16912 Selenicereus undatus HOM05D002704 ORTHO05D002891 4.2e-15 85.9 179 31.8
SGA_v2.0_scaffold31G12567 Striga asiatica HOM05D002704 ORTHO05D002891 4.2e-15 85.9 93 50.5
TAR628G0302 Trochodendron aralioides HOM05D002704 ORTHO05D002891 4.2e-15 85.9 196 32.1
HPP92_011170 Vanilla planifolia HOM05D002704 ORTHO05D002891 4.2e-15 85.9 133 35.3
FAN04G1068 Fragaria x ananassa HOM05D002704 ORTHO05D002891 7.1e-15 85.1 158 34.8
RcHm_v2.0_Chr7g0239041 Rosa chinensis HOM05D002704 ORTHO05D002891 7.1e-15 85.1 149 34.2
TWI12G0499 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 7.1e-15 85.1 173 32.4
Lsat_1_v5_gn_9_41620 Lactuca sativa HOM05D002704 ORTHO05D002891 9.3e-15 84.7 170 32.4
MD15G1368100 Malus domestica HOM05D002704 ORTHO05D002891 9.3e-15 84.7 164 34.1
CDE10G0971 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 1.2e-14 84.3 140 36.4
Ciclev10002416m.g Citrus clementina HOM05D002704 ORTHO05D002891 1.2e-14 84.3 168 32.7
CsaV3_3G048710 Cucumis sativus L. HOM05D002704 ORTHO05D002891 1.2e-14 84.3 155 32.9
Lj4C103T16 Lonicera japonica HOM05D002704 ORTHO05D002891 1.6e-14 84.0 204 29.4
Peaxi162Scf00041g00165 Petunia axillaris HOM05D002704 ORTHO05D002891 2.7e-14 83.2 171 32.2
Sed0020547 Sechium edule HOM05D002704 ORTHO05D002891 2.7e-14 83.2 154 32.5
CDE10G0994 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 3.5e-14 82.8 133 36.1
Gohir.D02G083400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 3.5e-14 82.8 158 34.2
Gorai.009G237500 Gossypium raimondii HOM05D002704 ORTHO05D002891 4.6e-14 82.4 173 34.1
Gorai.005G094000 Gossypium raimondii HOM05D002704 ORTHO05D002891 7.9e-14 81.6 158 34.2
HPP92_019307 Vanilla planifolia HOM05D002704 ORTHO05D002891 7.9e-14 81.6 138 31.9
EL10Ac1g01225 Beta vulgaris HOM05D002704 ORTHO05D002891 1.0e-13 81.3 153 33.3
AUR62038516 Chenopodium quinoa HOM05D002704 ORTHO05D002891 1.0e-13 81.3 166 32.5
CDE04G0076 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 1.3e-13 80.9 148 33.1
Duzib093G0662 Durio zibethinus HOM05D002704 ORTHO05D002891 1.3e-13 80.9 166 33.1
Solyc04g074080.3 Solanum lycopersicum HOM05D002704 ORTHO05D002891 1.3e-13 80.9 182 31.9
Dinv14325 Davidia involucrata HOM05D002704 ORTHO05D002891 1.8e-13 80.5 199 30.7
Gohir.A05G226700 Gossypium hirsutum HOM05D002704 ORTHO05D002891 1.8e-13 80.5 194 32.0
Prupe.1G516300 Prunus persica HOM05D002704 ORTHO05D002891 1.8e-13 80.5 158 32.3
Hund26960 Selenicereus undatus HOM05D002704 ORTHO05D002891 1.8e-13 80.5 165 30.9
AUR62027750 Chenopodium quinoa HOM05D002704 ORTHO05D002891 2.3e-13 80.1 167 32.9
Gohir.D05G229400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 2.3e-13 80.1 173 33.5
TAR625G1386 Trochodendron aralioides HOM05D002704 ORTHO05D002891 2.3e-13 80.1 183 30.6
Nitab4.5_0005777g0010 Nicotiana tabacum HOM05D002704 ORTHO05D002891 3.0e-13 79.7 169 30.8
PGSC0003DMG400006402 Solanum tuberosum HOM05D002704 ORTHO05D002891 3.0e-13 79.7 176 30.7
Ah.05g170030 Amaranthus hybridus HOM05D002704 ORTHO05D002891 3.9e-13 79.3 192 30.2
Thecc.08G107400 Theobroma cacao HOM05D002704 ORTHO05D002891 5.1e-13 79.0 198 30.8
HanXRQChr15g0491861 Helianthus annuus HOM05D002704 ORTHO05D002891 6.7e-13 78.6 179 31.3
TAR381G1126 Trochodendron aralioides HOM05D002704 ORTHO05D002891 6.7e-13 78.6 179 29.1
GSVIVG01009025001 Vitis vinifera HOM05D002704 ORTHO05D002891 6.7e-13 78.6 160 34.4
CAN.G101.15 Capsicum annuum HOM05D002704 ORTHO05D002891 8.7e-13 78.2 161 32.3
Gohir.A02G076100 Gossypium hirsutum HOM05D002704 ORTHO05D002891 8.7e-13 78.2 161 33.5
MD08G1182400 Malus domestica HOM05D002704 ORTHO05D002891 8.7e-13 78.2 197 31.0
Cpa.g.sc36.127 Carica papaya HOM05D002704 ORTHO05D002891 1.1e-12 77.8 163 31.3
Dinv44770 Davidia involucrata HOM05D002704 ORTHO05D002891 1.1e-12 77.8 164 31.7
Manes.02G153000 Manihot esculenta HOM05D002704 ORTHO05D002891 1.5e-12 77.4 155 32.3
QL12p036715 Quercus lobata HOM05D002704 ORTHO05D002891 1.5e-12 77.4 205 28.3
Eucgr.B00020 Eucalyptus grandis HOM05D002704 ORTHO05D002891 1.9e-12 77.0 172 37.2
Nitab4.5_0000232g0230 Nicotiana tabacum HOM05D002704 ORTHO05D002891 1.9e-12 77.0 187 29.9
Duzib041G0800 Durio zibethinus HOM05D002704 ORTHO05D002891 2.5e-12 76.6 177 32.2
CiPaw.08G044800 Carya illinoinensis HOM05D002704 ORTHO05D002891 5.6e-12 75.5 186 29.6
Potri.005G165300 Populus trichocarpa HOM05D002704 ORTHO05D002891 7.4e-12 75.1 193 29.5
Sc23g0000210 Simmondsia chinensis HOM05D002704 ORTHO05D002891 7.4e-12 75.1 160 30.0
Duzib116G0617 Durio zibethinus HOM05D002704 ORTHO05D002891 9.6e-12 74.7 164 33.5
Eucgr.F02409 Eucalyptus grandis HOM05D002704 ORTHO05D002891 1.3e-11 74.3 173 36.4
Zm00001eb006930 Zea mays HOM05D002704 ORTHO05D002891 1.6e-11 73.9 139 28.8
Potri.002G096100 Populus trichocarpa HOM05D002704 ORTHO05D002891 2.1e-11 73.6 165 28.5
Actinidia10319 Actinidia chinensis HOM05D002704 ORTHO05D002891 2.8e-11 73.2 156 29.5
Manes.18G067800 Manihot esculenta HOM05D002704 ORTHO05D002891 2.8e-11 73.2 200 26.5
Psat2g072240 Pisum sativum HOM05D002704 ORTHO05D002891 3.6e-11 72.8 134 35.1
Nn5g30117 Nelumbo nucifera HOM05D002704 ORTHO05D002891 6.2e-11 72.0 199 27.1
PSO447G0371 Papaver somniferum HOM05D002704 ORTHO05D002891 1.4e-10 70.9 151 29.1
HPP92_011168 Vanilla planifolia HOM05D002704 ORTHO05D002891 1.4e-10 70.9 133 33.8
Hma1.2p1_0237F.1_g099460 Hydrangea macrophylla HOM05D002704 ORTHO05D002891 1.8e-10 70.5 195 27.7
PSO210G1059 Papaver somniferum HOM05D002704 ORTHO05D002891 1.8e-10 70.5 175 28.6
Zm00001eb401340 Zea mays HOM05D002704 ORTHO05D002891 2.4e-10 70.1 145 34.5
Sabra02G0075700 Salix brachista HOM05D002704 ORTHO05D002891 3.1e-10 69.7 177 28.8
Ca_05274_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 4.0e-10 69.3 190 31.1
DCAR_029361 Daucus carota HOM05D002704 ORTHO05D002891 5.3e-10 68.9 156 30.1
CANSAT25G0913 Cannabis sativa HOM05D002704 ORTHO05D002891 6.9e-10 68.6 211 25.6
MSTRG.22153 Avicennia marina HOM05D002704 ORTHO05D002891 1.5e-09 67.4 183 30.1
COL.COLO4_16406 Corchorus olitorius HOM05D002704 ORTHO05D002891 1.5e-09 67.4 184 28.8
Haze_22261 Corylus avellana HOM05D002704 ORTHO05D002891 1.5e-09 67.4 165 27.3
CSS0027836 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 2.6e-09 66.6 160 28.8
Nitab4.5_0000421g0060 Nicotiana tabacum HOM05D002704 ORTHO05D002891 3.4e-09 66.2 132 29.5
Oeu012923.1 Olea europaea HOM05D002704 ORTHO05D002891 3.4e-09 66.2 135 29.6
Medtr5g063720 Medicago truncatula HOM05D002704 ORTHO05D002891 4.5e-09 65.9 160 34.4
MSTRG.24460 Avicennia marina HOM05D002704 ORTHO05D002891 9.9e-09 64.7 173 27.2
Actinidia27183 Actinidia chinensis HOM05D002704 ORTHO05D002891 2.2e-08 63.5 154 29.9
Os03g0191200 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 6.4e-08 62.0 219 25.6
Oeu046295.1 Olea europaea HOM05D002704 ORTHO05D002891 8.4e-08 61.6 143 30.8
Lj1g0002648 Lotus japonicus HOM05D002704 ORTHO05D002891 1.4e-07 60.8 166 29.5
CDE12G0481 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 2.4e-07 60.1 131 29.8
Nn1g05351 Nelumbo nucifera HOM05D002704 ORTHO05D002891 2.4e-07 60.1 178 25.8
PSO017G2423 Papaver somniferum HOM05D047741 ORTHO05D002891 2.4e-07 60.1 203 33.0
PSO675G3707 Papaver somniferum HOM05D047741 ORTHO05D002891 5.5e-07 58.9 136 36.0
Lalb_Chr04g0253151 Lupinus albus HOM05D002704 ORTHO05D002891 7.1e-07 58.5 150 30.7
Rhsim06G0082500 Rhododendron simsii HOM05D002704 ORTHO05D002891 7.1e-07 58.5 206 25.7
Ca_15248_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 2.1e-06 57.0 162 30.2
Cc10_g07250 Coffea canephora HOM05D002704 ORTHO05D002891 2.1e-06 57.0 212 25.0
Phvul.009G030900 Phaseolus vulgaris HOM05D002704 ORTHO05D002891 2.1e-06 57.0 172 28.5
THA.LOC104809714 Tarenaya hassleriana HOM05D002704 ORTHO05D002891 2.1e-06 57.0 178 28.7
Aqoxy2G01020 Aquilegia oxysepala HOM05D001667 ORTHO05D001508 2.7e-06 56.6 128 31.2
TPR.G32999 Trifolium pratense HOM05D002704 ORTHO05D002891 2.7e-06 56.6 181 28.7
Glyma.04G102400 Glycine max HOM05D002704 ORTHO05D002891 3.5e-06 56.2 166 31.9
TPR.G34534 Trifolium pratense HOM05D002704 ORTHO05D002891 4.6e-06 55.8 154 33.8
ECA232G3648 Erigeron canadensis HOM05D002704 ORTHO05D000131 6.0e-06 55.5 84 36.9
Thhalv10019097m.g Eutrema salsugineum HOM05D002704 ORTHO05D002891 6.0e-06 55.5 203 27.1
Medtr3g074450 Medicago truncatula HOM05D002704 ORTHO05D002891 6.0e-06 55.5 203 29.6
VMungo0647G0311 Vigna mungo HOM05D002704 ORTHO05D002891 7.9e-06 55.1 196 28.1


User provided reference genes

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