Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004987 Camellia sinensis var. sinensis HOM05D006906 ORTHO05D008578 1.2e-55 219.5 108 100.0
Actinidia19594 Actinidia chinensis HOM05D006906 ORTHO05D008578 6.1e-31 137.5 112 69.6
Hma1.2p1_1068F.1_g254010 Hydrangea macrophylla HOM05D006906 ORTHO05D008578 6.1e-31 137.5 96 79.2
Dinv01221 Davidia involucrata HOM05D006906 ORTHO05D008578 5.1e-30 134.4 110 66.4
vmacro04612 Vaccinium macrocarpon HOM05D006906 ORTHO05D008578 1.3e-28 129.8 113 65.5
Rhsim07G0215600 Rhododendron simsii HOM05D006906 ORTHO05D008578 2.2e-28 129.0 111 62.2
Prupe.1G543500 Prunus persica HOM05D006906 ORTHO05D008578 4.5e-26 121.3 115 59.1
Cfa020715 Carpinus fangiana HOM05D006906 ORTHO05D008578 5.9e-26 120.9 99 65.7
Manes.18G052450 Manihot esculenta HOM05D006906 ORTHO05D008578 7.7e-26 120.6 93 63.4
Ciclev10002778m.g Citrus clementina HOM05D006906 ORTHO05D008578 1.3e-25 119.8 103 62.1
Potri.002G112500 Populus trichocarpa HOM05D006906 ORTHO05D008578 3.8e-25 118.2 99 63.6
PGR031G1810 Punica granatum HOM05D006906 ORTHO05D008578 3.8e-25 118.2 93 69.9
Aqoxy6G01513 Aquilegia oxysepala HOM05D006906 ORTHO05D008578 5.0e-25 117.9 99 59.6
CiPaw.15G153800 Carya illinoinensis HOM05D006906 ORTHO05D008578 5.0e-25 117.9 99 68.7
TWI56G0746 Tripterygium wilfordii HOM05D006906 ORTHO05D008578 5.0e-25 117.9 91 63.7
Ah.05g166860 Amaranthus hybridus HOM05D006906 ORTHO05D008578 6.5e-25 117.5 111 55.9
Nitab4.5_0002415g0040 Nicotiana tabacum HOM05D006906 ORTHO05D008578 6.5e-25 117.5 107 61.7
Haze_19024 Corylus avellana HOM05D006906 ORTHO05D008578 8.5e-25 117.1 112 58.9
SGA_v2.0_scaffold152G36871 Striga asiatica HOM05D006906 ORTHO05D008578 1.4e-24 116.3 98 68.4
DCAR_012832 Daucus carota HOM05D006906 ORTHO05D008578 3.2e-24 115.2 92 65.2
MD08G1211600 Malus domestica HOM05D006906 ORTHO05D008578 3.2e-24 115.2 120 55.0
MSTRG.17420 Avicennia marina HOM05D006906 ORTHO05D008578 4.2e-24 114.8 106 64.2
Sc26g0004280 Simmondsia chinensis HOM05D006906 ORTHO05D008578 4.2e-24 114.8 91 67.0
PGSC0003DMG400004936 Solanum tuberosum HOM05D006906 ORTHO05D008578 5.5e-24 114.4 98 66.3
BcaB08g36735 Brassica carinata HOM05D006906 ORTHO05D008578 7.2e-24 114.0 99 61.6
TAR628G1359 Trochodendron aralioides HOM05D006906 ORTHO05D008578 7.2e-24 114.0 102 58.8
CANSAT01G2303 Cannabis sativa HOM05D006906 ORTHO05D008578 9.4e-24 113.6 99 62.6
Thhalv10015071m.g Eutrema salsugineum HOM05D006906 ORTHO05D008578 9.4e-24 113.6 99 62.6
C09p59250 Brassica napus HOM05D006906 ORTHO05D008578 1.2e-23 113.2 101 57.4
Carub.0006s1610 Capsella rubella HOM05D006906 ORTHO05D008578 1.2e-23 113.2 103 58.3
QL12p040639 Quercus lobata HOM05D006906 ORTHO05D008578 1.2e-23 113.2 108 58.3
Sabra02G0088700 Salix brachista HOM05D006906 ORTHO05D008578 1.2e-23 113.2 99 60.6
BcaB01g04920 Brassica carinata HOM05D006906 ORTHO05D008578 1.6e-23 112.8 102 60.8
Solyc04g077130.1 Solanum lycopersicum HOM05D006906 ORTHO05D008578 1.6e-23 112.8 98 65.3
AT5G17870 Arabidopsis thaliana HOM05D006906 ORTHO05D008578 2.1e-23 112.5 98 61.2
C03p09940 Brassica napus HOM05D006906 ORTHO05D008578 2.1e-23 112.5 101 58.4
BcaB01g05160 Brassica carinata HOM05D006906 ORTHO05D008578 2.7e-23 112.1 102 57.8
BolC3t13482H Brassica oleracea HOM05D006906 ORTHO05D008578 2.7e-23 112.1 102 57.8
BolC9t58765H Brassica oleracea HOM05D006906 ORTHO05D008578 2.7e-23 112.1 101 57.4
BraA03t10177Z Brassica rapa HOM05D006906 ORTHO05D008578 2.7e-23 112.1 102 57.8
BraA10t44222Z Brassica rapa HOM05D006906 ORTHO05D008578 2.7e-23 112.1 94 59.6
AL6G28970 Arabidopsis lyrata HOM05D006906 ORTHO05D008578 3.6e-23 111.7 103 58.3
A10p21600 Brassica napus HOM05D006906 ORTHO05D008578 3.6e-23 111.7 96 60.4
BcaC04g18752 Brassica carinata HOM05D006906 ORTHO05D008578 4.7e-23 111.3 101 57.4
A02p04550 Brassica napus HOM05D006906 ORTHO05D008578 4.7e-23 111.3 97 57.7
EL10Ac1g02326 Beta vulgaris HOM05D006906 ORTHO05D008578 6.1e-23 110.9 94 60.6
RcHm_v2.0_Chr7g0232161 Rosa chinensis HOM05D006906 ORTHO05D008578 6.1e-23 110.9 105 57.1
Duzib116G0218 Durio zibethinus HOM05D006906 ORTHO05D008578 1.8e-22 109.4 70 78.6
Sed0015154 Sechium edule HOM05D006906 ORTHO05D008578 1.8e-22 109.4 99 59.6
BcaC03g13555 Brassica carinata HOM05D006906 ORTHO05D008578 2.3e-22 109.0 100 57.0
ClCG11G014950 Citrullus lanatus HOM05D006906 ORTHO05D008578 2.3e-22 109.0 90 64.4
Sp6g26380 Schrenkiella parvula HOM05D006906 ORTHO05D008578 2.3e-22 109.0 99 62.6
BolC2t06848H Brassica oleracea HOM05D006906 ORTHO05D008578 3.9e-22 108.2 100 56.0
Duzib116G0588 Durio zibethinus HOM05D006906 ORTHO05D008578 3.9e-22 108.2 70 77.1
Cpa.g.sc160.12 Carica papaya HOM05D006906 ORTHO05D008578 5.1e-22 107.8 111 53.2
BraA02t05416Z Brassica rapa HOM05D006906 ORTHO05D008578 6.7e-22 107.5 94 58.5
Sopen04g030750 Solanum pennellii HOM05D006906 ORTHO05D008578 6.7e-22 107.5 98 61.2
Atru.chr13.910 Acer truncatum HOM05D006906 ORTHO05D008578 8.8e-22 107.1 102 57.8
Eucgr.F00111 Eucalyptus grandis HOM05D006906 ORTHO05D008578 1.5e-21 106.3 94 59.6
Duzib093G2206 Durio zibethinus HOM05D006906 ORTHO05D008578 2.0e-21 105.9 112 53.6
FvH4_5g33440 Fragaria vesca HOM05D006906 ORTHO05D008578 2.0e-21 105.9 109 56.9
FAN18G0347 Fragaria x ananassa HOM05D006906 ORTHO05D008578 2.0e-21 105.9 109 56.9
Thecc.08G080900 Theobroma cacao HOM05D006906 ORTHO05D008578 2.0e-21 105.9 59 84.7
CAN.G416.50 Capsicum annuum HOM05D006906 ORTHO05D008578 2.6e-21 105.5 97 57.7
HanXRQChr16g0510751 Helianthus annuus HOM05D006906 ORTHO05D008578 2.6e-21 105.5 105 55.2
HanXRQChr16g0510761 Helianthus annuus HOM05D006906 ORTHO05D008578 2.6e-21 105.5 105 55.2
Nitab4.5_0001614g0100 Nicotiana tabacum HOM05D006906 ORTHO05D008578 2.6e-21 105.5 88 64.8
Aa31LG11G11710 Aethionema arabicum HOM05D006906 ORTHO05D008578 3.3e-21 105.1 95 61.1
AUR62034964 Chenopodium quinoa HOM05D006906 ORTHO05D008578 3.3e-21 105.1 90 57.8
Peaxi162Scf00628g00053 Petunia axillaris HOM05D006906 ORTHO05D008578 3.3e-21 105.1 82 67.1
MD15G1394500 Malus domestica HOM05D006906 ORTHO05D008578 4.4e-21 104.8 106 56.6
CARHR195300 Cardamine hirsuta HOM05D006906 ORTHO05D008578 5.7e-21 104.4 96 58.3
Gohir.A05G213900 Gossypium hirsutum HOM05D006906 ORTHO05D008578 5.7e-21 104.4 59 81.4
TWI12G0785 Tripterygium wilfordii HOM05D006906 ORTHO05D008578 5.7e-21 104.4 99 59.6
Phvul.009G113500 Phaseolus vulgaris HOM05D006906 ORTHO05D008578 7.4e-21 104.0 102 53.9
Gorai.009G224100 Gossypium raimondii HOM05D006906 ORTHO05D008578 9.7e-21 103.6 59 81.4
Prupe.3G080900 Prunus persica HOM05D006906 ORTHO05D008578 9.7e-21 103.6 95 58.9
Lsat_1_v5_gn_6_108161 Lactuca sativa HOM05D006906 ORTHO05D008578 1.3e-20 103.2 99 59.6
MELO3C003483.2 Cucumis melo HOM05D006906 ORTHO05D008578 2.8e-20 102.1 90 62.2
Gohir.D05G217300 Gossypium hirsutum HOM05D006906 ORTHO05D008578 3.7e-20 101.7 59 79.7
FAN08G0950 Fragaria x ananassa HOM05D006906 ORTHO05D008578 4.8e-20 101.3 107 56.1
AUR62035774 Chenopodium quinoa HOM05D006906 ORTHO05D008578 6.3e-20 100.9 90 55.6
Glyma.06G089700 Glycine max HOM05D006906 ORTHO05D008578 1.4e-19 99.8 102 55.9
SalBow2G0068 Salvia bowleyana HOM05D006906 ORTHO05D008578 1.4e-19 99.8 108 53.7
CDE01G0046 Ceratophyllum demersum HOM05D006906 ORTHO05D008578 2.4e-19 99.0 58 77.6
unitig_21.g20623 Utricularia gibba HOM05D006906 ORTHO05D008578 5.3e-19 97.8 92 62.0
COL.COLO4_35364 Corchorus olitorius HOM05D006906 ORTHO05D008578 6.9e-19 97.4 94 57.4
THA.LOC104806946 Tarenaya hassleriana HOM05D006906 ORTHO05D008578 9.1e-19 97.1 95 54.7
ECA246G4410 Erigeron canadensis HOM05D006906 ORTHO05D008578 7.7e-18 94.0 104 49.0
MBI16_g41120_MAGBIO Magnolia biondii HOM05D006906 ORTHO05D008578 2.9e-17 92.0 49 79.6
TPR.G12407 Trifolium pratense HOM05D006906 ORTHO05D008578 5.0e-17 91.3 101 52.5
Psat1g221800 Pisum sativum HOM05D006906 ORTHO05D008578 8.5e-17 90.5 102 50.0
Medtr3g110640 Medicago truncatula HOM05D006906 ORTHO05D008578 1.1e-16 90.1 103 49.5
ATR0767G231 Amborella trichopoda HOM05D006906 ORTHO05D008578 2.5e-16 89.0 85 55.3
Migut.N02816 Erythranthe guttata HOM05D006906 ORTHO05D008578 3.2e-16 88.6 85 65.9
Os11g0550800 Oryza sativa ssp. japonica HOM05D006906 ORTHO05D008578 3.2e-16 88.6 57 71.9
Nn5g30714 Nelumbo nucifera HOM05D006906 ORTHO05D008578 9.4e-16 87.0 102 52.0
PSO541G5790 Papaver somniferum HOM05D006906 ORTHO05D008578 1.2e-15 86.7 95 52.6
PSO675G4379 Papaver somniferum HOM05D006906 ORTHO05D008578 1.6e-15 86.3 95 51.6
Thhalv10009816m.g Eutrema salsugineum HOM05D006906 ORTHO05D008578 2.1e-15 85.9 70 60.0
BcaC04g18751 Brassica carinata HOM05D006906 ORTHO05D008578 3.6e-15 85.1 96 52.1
C09p59230 Brassica napus HOM05D006906 ORTHO05D008578 3.6e-15 85.1 96 52.1
Prupe.8G111300 Prunus persica HOM05D006906 ORTHO05D008578 3.6e-15 85.1 68 67.6
BolC9t58763H Brassica oleracea HOM05D006906 ORTHO05D008578 5.2e-14 81.3 96 51.0
HPP92_027718 Vanilla planifolia HOM05D006906 ORTHO05D008578 4.4e-13 78.2 64 60.9
HPP92_027715 Vanilla planifolia HOM05D006906 ORTHO05D008578 5.7e-13 77.8 64 60.9
Manes.05G185700 Manihot esculenta HOM05D006906 ORTHO05D008578 7.0e-11 70.9 97 44.3
CBR_g48804 Chara braunii HOM05D006906 ORTHO05D008578 5.0e-09 64.7 49 59.2
Mapoly0090s0093 Marchantia polymorpha HOM05D006906 ORTHO05D008578 3.2e-08 62.0 68 52.9
A03p08530 Brassica napus HOM05D006906 ORTHO05D008578 4.2e-08 61.6 99 43.4
BcaB05g23287 Brassica carinata HOM05D006906 ORTHO05D008578 7.2e-08 60.8 101 43.6
Pp3c3_11690 Physcomitrium patens HOM05D006906 ORTHO05D008578 2.1e-07 59.3 56 57.1
SEGI_12109 Sequoiadendron giganteum HOM05D006906 ORTHO05D008578 4.7e-07 58.2 37 75.7
SMO367G0828 Selaginella moellendorffii HOM05D006906 ORTHO05D008578 3.0e-06 55.5 49 63.3


User provided reference genes

Program Settings