Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004965 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 5.2e-99 364.4 186 100.0
CSS0009369 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 1.0e-94 350.1 200 92.5
Actinidia04437 Actinidia chinensis HOM05D001420 ORTHO05D009292 4.6e-79 298.1 179 84.9
vmacro18348 Vaccinium macrocarpon HOM05D001420 ORTHO05D009292 1.0e-78 297.0 186 82.3
Dinv25658 Davidia involucrata HOM05D001420 ORTHO05D002488 1.1e-75 287.0 185 78.9
Migut.F00060 Erythranthe guttata HOM05D001420 ORTHO05D009292 6.5e-73 277.7 175 78.3
GSVIVG01033089001 Vitis vinifera HOM05D001420 ORTHO05D009292 2.5e-72 275.8 178 78.1
Nitab4.5_0005161g0070 Nicotiana tabacum HOM05D001420 ORTHO05D009292 9.3e-72 273.9 177 76.8
Oeu035224.1 Olea europaea HOM05D001420 ORTHO05D009292 9.3e-72 273.9 180 79.4
Hma1.2p1_1278F.1_g272270 Hydrangea macrophylla HOM05D001420 ORTHO05D009292 2.1e-71 272.7 180 76.1
Rhsim08G0042700 Rhododendron simsii HOM05D001420 ORTHO05D009292 4.6e-71 271.6 182 79.1
Cc07_g00860 Coffea canephora HOM05D001420 ORTHO05D009292 1.0e-70 270.4 174 78.2
MSTRG.3074 Avicennia marina HOM05D001420 ORTHO05D009292 1.3e-70 270.0 179 78.2
SGA_v2.0_scaffold44G16915 Striga asiatica HOM05D001420 ORTHO05D009292 8.7e-70 267.3 175 76.0
Potri.001G329600 Populus trichocarpa HOM05D001420 ORTHO05D009292 1.1e-69 266.9 178 75.8
TAR622G0082 Trochodendron aralioides HOM05D001420 ORTHO05D009292 1.5e-69 266.5 172 78.5
Nitab4.5_0000559g0390 Nicotiana tabacum HOM05D001420 ORTHO05D009292 4.3e-69 265.0 184 73.4
PGR142G3591 Punica granatum HOM05D001420 ORTHO05D009292 4.3e-69 265.0 180 73.3
Haze_14879 Corylus avellana HOM05D001420 ORTHO05D009292 7.4e-69 264.2 177 73.4
Thecc.04G036700 Theobroma cacao HOM05D001420 ORTHO05D009292 9.7e-69 263.8 182 73.1
MD09G1010400 Malus domestica HOM05D001420 ORTHO05D009292 1.6e-68 263.1 174 76.4
MBI11_g44423_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 1.8e-67 259.6 182 72.5
Cpa.g.sc171.11 Carica papaya HOM05D001420 ORTHO05D009292 3.1e-67 258.8 178 71.9
Prupe.3G306700 Prunus persica HOM05D001420 ORTHO05D009292 4.1e-67 258.5 177 74.6
RcHm_v2.0_Chr2g0175601 Rosa chinensis HOM05D001420 ORTHO05D009292 5.3e-67 258.1 173 74.6
FvH4_6g53561 Fragaria vesca HOM05D001420 ORTHO05D009292 6.9e-67 257.7 173 74.6
FAN09G1657 Fragaria x ananassa HOM05D001420 ORTHO05D009292 1.2e-66 256.9 173 73.4
Duzib147G1300 Durio zibethinus HOM05D001420 ORTHO05D009292 1.5e-66 256.5 179 72.1
THA.LOC104825624 Tarenaya hassleriana HOM05D001420 ORTHO05D009292 1.3e-65 253.4 175 72.6
Nn3g16459 Nelumbo nucifera HOM05D001420 ORTHO05D009292 3.8e-65 251.9 184 70.7
Lj1g0001542 Lotus japonicus HOM05D001420 ORTHO05D009292 5.0e-65 251.5 180 69.4
Eucgr.I01645 Eucalyptus grandis HOM05D001420 ORTHO05D009292 1.1e-64 250.4 176 72.2
QL02p071311 Quercus lobata HOM05D001420 ORTHO05D009292 1.9e-64 249.6 186 71.0
TPR.G38286 Trifolium pratense HOM05D001420 ORTHO05D009292 2.5e-64 249.2 176 68.8
Glyma.19G091500 Glycine max HOM05D001420 ORTHO05D009292 4.2e-64 248.4 178 70.8
FAN14G1551 Fragaria x ananassa HOM05D001420 ORTHO05D000136 5.5e-64 248.1 167 74.9
Gorai.006G042300 Gossypium raimondii HOM05D001420 ORTHO05D009292 5.5e-64 248.1 180 68.9
Gohir.A09G036000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 7.2e-64 247.7 177 69.5
Medtr7g029105 Medicago truncatula HOM05D001420 ORTHO05D009292 1.2e-63 246.9 176 69.3
SalBow4G1795 Salvia bowleyana HOM05D001420 ORTHO05D009292 2.7e-63 245.7 177 71.8
Aqoxy3G01555 Aquilegia oxysepala HOM05D001420 ORTHO05D009292 4.6e-63 245.0 171 71.9
AUR62017830 Chenopodium quinoa HOM05D001420 ORTHO05D009292 4.6e-63 245.0 175 70.9
FAN05G4256 Fragaria x ananassa HOM05D001420 ORTHO05D009292 4.6e-63 245.0 185 67.6
AUR62003518 Chenopodium quinoa HOM05D001420 ORTHO05D009292 6.1e-63 244.6 175 70.3
Manes.15G161200 Manihot esculenta HOM05D001420 ORTHO05D009292 1.0e-62 243.8 174 73.6
TWI60G0015 Tripterygium wilfordii HOM05D001420 ORTHO05D009292 1.4e-62 243.4 187 68.4
CANSAT64G1297 Cannabis sativa HOM05D001420 ORTHO05D009292 2.3e-62 242.7 174 71.3
arahy.Tifrunner.gnm1.ann1.WDB61R Arachis hypogaea HOM05D001420 ORTHO05D009292 3.0e-62 242.3 181 67.4
BcaB04g19424 Brassica carinata HOM05D001420 ORTHO05D009292 3.0e-62 242.3 174 69.0
PGSC0003DMG400022915 Solanum tuberosum HOM05D001420 ORTHO05D009292 8.8e-62 240.7 174 67.2
Thhalv10004992m.g Eutrema salsugineum HOM05D001420 ORTHO05D009292 1.1e-61 240.4 178 67.4
AL5G16160 Arabidopsis lyrata HOM05D001420 ORTHO05D009292 2.5e-61 239.2 178 67.4
Psat3g174720 Pisum sativum HOM05D001420 ORTHO05D002488 3.3e-61 238.8 179 64.8
PSO478G4377 Papaver somniferum HOM05D001420 ORTHO05D009292 5.7e-61 238.0 169 69.8
Sc15g0002740 Simmondsia chinensis HOM05D001420 ORTHO05D009292 1.3e-60 236.9 169 71.6
AT3G27050 Arabidopsis thaliana HOM05D001420 ORTHO05D009292 1.7e-60 236.5 178 67.4
Sp2g16180 Schrenkiella parvula HOM05D001420 ORTHO05D009292 1.7e-60 236.5 178 66.9
VMungo1383G3091 Vigna mungo HOM05D001420 ORTHO05D009292 1.7e-60 236.5 176 67.6
BcaC04g23914 Brassica carinata HOM05D001420 ORTHO05D009292 2.2e-60 236.1 178 66.9
Glyma.16G056200 Glycine max HOM05D001420 ORTHO05D009292 2.2e-60 236.1 174 67.2
unitig_60.g25408 Utricularia gibba HOM05D001420 ORTHO05D009292 2.2e-60 236.1 175 68.6
Carub.0005s0529 Capsella rubella HOM05D001420 ORTHO05D009292 1.8e-59 233.0 174 66.1
A09p03260 Brassica napus HOM05D001420 ORTHO05D009292 2.4e-59 232.6 179 67.0
BraA09t35964Z Brassica rapa HOM05D001420 ORTHO05D009292 2.4e-59 232.6 179 67.0
Aa31LG2G5540 Aethionema arabicum HOM05D001420 ORTHO05D009292 4.1e-59 231.9 178 66.9
C09p03460 Brassica napus HOM05D001420 ORTHO05D009292 5.3e-59 231.5 179 66.5
BolC9t53267H Brassica oleracea HOM05D001420 ORTHO05D009292 5.3e-59 231.5 179 66.5
Lalb_Chr22g0360361 Lupinus albus HOM05D001420 ORTHO05D009292 5.3e-59 231.5 172 67.4
HPP92_009721 Vanilla planifolia HOM05D001420 ORTHO05D009292 9.1e-59 230.7 173 68.2
ATR0561G272 Amborella trichopoda HOM05D001420 ORTHO05D009292 1.5e-58 229.9 169 68.6
CARHR148270 Cardamine hirsuta HOM05D001420 ORTHO05D009292 1.5e-58 229.9 178 64.6
SalBow4G0299 Salvia bowleyana HOM05D001420 ORTHO05D009292 2.0e-58 229.6 208 61.1
PSO017G5378 Papaver somniferum HOM05D001420 ORTHO05D009292 3.8e-57 225.3 174 66.1
Cfa007225 Carpinus fangiana HOM05D001420 ORTHO05D009292 1.1e-56 223.8 143 76.2
Sabra16G0211000 Salix brachista HOM05D001420 ORTHO05D009292 2.5e-56 222.6 253 52.6
Haze_14955 Corylus avellana HOM05D001420 ORTHO05D009292 4.2e-56 221.9 141 76.6
Atru.chr6.2574 Acer truncatum HOM05D001420 ORTHO05D009292 9.4e-56 220.7 147 74.1
HanXRQChr17g0550091 Helianthus annuus HOM05D001420 ORTHO05D009292 3.6e-55 218.8 165 68.5
Lsat_1_v5_gn_0_26060 Lactuca sativa HOM05D001420 ORTHO05D009292 3.6e-55 218.8 166 65.7
CDE05G2056 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 1.4e-54 216.9 171 62.6
Dinv33335 Davidia involucrata HOM05D001420 ORTHO05D009292 1.8e-54 216.5 126 84.1
ECA246G1005 Erigeron canadensis HOM05D001420 ORTHO05D002488 2.3e-54 216.1 166 65.1
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 5.7e-53 211.5 149 73.2
ClCG05G013550 Citrullus lanatus HOM05D001420 ORTHO05D009292 7.4e-53 211.1 166 66.3
CsaV3_3G026980 Cucumis sativus L. HOM05D001420 ORTHO05D009292 2.2e-52 209.5 167 65.3
Sed0020252 Sechium edule HOM05D001420 ORTHO05D009292 3.7e-52 208.8 168 64.9
Peaxi162Scf00700g00030 Petunia axillaris HOM05D001420 ORTHO05D009292 6.3e-52 208.0 140 72.1
Gohir.D09G037000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 1.0e-49 200.7 144 69.4
SEGI_21368 Sequoiadendron giganteum HOM05D001420 ORTHO05D009292 2.9e-49 199.1 170 58.2
Ciclev10017089m.g Citrus clementina HOM05D001420 ORTHO05D009292 3.8e-49 198.7 144 70.1
Phvul.001G093200 Phaseolus vulgaris HOM05D001420 ORTHO05D009292 1.9e-48 196.4 178 57.3
Os11g0488600 Oryza sativa ssp. japonica HOM05D001420 ORTHO05D009292 4.7e-47 191.8 177 58.2
Lj7C610G7 Lonicera japonica HOM05D001420 ORTHO05D009292 1.1e-45 187.2 117 79.5
RcHm_v2.0_Chr2g0175681 Rosa chinensis HOM05D001420 ORTHO05D009292 2.6e-45 186.0 138 68.1
Zm00001eb112760 Zea mays HOM05D001420 ORTHO05D009292 1.4e-43 180.3 207 49.8
MELO3C014890.2 Cucumis melo HOM05D001420 ORTHO05D009292 1.2e-42 177.2 138 66.7
Pp3c1_27230 Physcomitrium patens HOM05D001420 ORTHO05D009292 1.9e-40 169.9 173 50.9
Pp3c14_4200 Physcomitrium patens HOM05D001420 ORTHO05D009292 5.5e-40 168.3 171 49.7
AagrBONN_evm.TU.Sc2ySwM_228.3079 Anthoceros agrestis HOM05D001420 ORTHO05D009292 1.6e-39 166.8 169 49.1
Ah.03g147520 Amaranthus hybridus HOM05D001420 ORTHO05D009292 2.1e-39 166.4 139 64.7
MD16G1254400 Malus domestica HOM05D001420 ORTHO05D009292 6.7e-38 161.4 123 66.7
SMO119G0238 Selaginella moellendorffii HOM05D001420 ORTHO05D009292 1.7e-36 156.8 142 56.3
CBR_g762 Chara braunii HOM05D001420 ORTHO05D009292 1.1e-32 144.1 166 44.6
CDE05G0537 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 1.3e-28 130.6 116 56.9
DCAR_021795 Daucus carota HOM05D001420 ORTHO05D009292 8.3e-28 127.9 89 73.0
CiPaw.03G055800 Carya illinoinensis HOM05D001420 ORTHO05D002488 7.0e-19 98.2 64 76.6
FAN02G0503 Fragaria x ananassa HOM05D001420 ORTHO05D009292 1.0e-14 84.3 66 65.2
Cre01.g049050 Chlamydomonas reinhardtii HOM05D001420 ORTHO05D009292 3.4e-13 79.3 154 31.8
Nitab4.5_0000525g0030 Nicotiana tabacum HOM05D001420 ORTHO05D009292 4.9e-12 75.5 42 81.0
Hund12739 Selenicereus undatus HOM05D001420 ORTHO05D009292 4.9e-12 75.5 54 72.2
Actinidia30872 Actinidia chinensis HOM05D005765 ORTHO05D002313 2.0e-10 70.1 97 47.4


User provided reference genes

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