Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004945 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 6.0e-239 830.5 432 100.0
CSS0012136 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 8.2e-188 660.6 427 84.5
CSS0027781 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 7.5e-141 504.6 692 48.7
Rhsim11G0036600 Rhododendron simsii HOM05D001176 ORTHO05D007019 2.3e-137 493.0 737 45.9
TAR375G1104 Trochodendron aralioides HOM05D001176 ORTHO05D007019 3.4e-133 479.2 694 46.1
Lj9C202G6 Lonicera japonica HOM05D001176 ORTHO05D007019 1.7e-132 476.9 697 46.1
Peaxi162Scf00193g00811 Petunia axillaris HOM05D001176 ORTHO05D007019 1.6e-130 470.3 683 46.4
Nitab4.5_0001333g0050 Nicotiana tabacum HOM05D001176 ORTHO05D007019 4.6e-130 468.8 663 47.4
CiPaw.11G075700 Carya illinoinensis HOM05D001176 ORTHO05D007019 2.3e-129 466.5 691 45.9
GSVIVG01013198001 Vitis vinifera HOM05D001176 ORTHO05D007019 2.3e-129 466.5 687 45.9
Cc08_g05630 Coffea canephora HOM05D001176 ORTHO05D007019 6.6e-129 464.9 698 45.4
CAN.G930.8 Capsicum annuum HOM05D001176 ORTHO05D007019 8.7e-129 464.5 692 45.7
Nn1g09379 Nelumbo nucifera HOM05D001176 ORTHO05D007019 8.7e-129 464.5 659 46.0
Nitab4.5_0000030g0410 Nicotiana tabacum HOM05D001176 ORTHO05D007019 1.5e-128 463.8 692 45.8
COL.COLO4_11286 Corchorus olitorius HOM05D001176 ORTHO05D007019 9.6e-128 461.1 688 45.3
Duzib205G1840 Durio zibethinus HOM05D001176 ORTHO05D007019 2.1e-127 459.9 694 45.0
Atru.chr8.2633 Acer truncatum HOM05D001176 ORTHO05D007019 6.2e-127 458.4 698 45.3
DCAR_001483 Daucus carota HOM05D001176 ORTHO05D007019 1.1e-126 457.6 687 45.1
Solyc08g075440.4 Solanum lycopersicum HOM05D001176 ORTHO05D007019 6.9e-126 454.9 692 44.9
Sopen08g024070 Solanum pennellii HOM05D001176 ORTHO05D007019 6.9e-126 454.9 692 44.9
HanXRQChr03g0068151 Helianthus annuus HOM05D001176 ORTHO05D007019 9.0e-126 454.5 691 44.7
Manes.15G189800 Manihot esculenta HOM05D001176 ORTHO05D007019 1.2e-125 454.1 692 44.9
AUR62017508 Chenopodium quinoa HOM05D001176 ORTHO05D007019 3.4e-125 452.6 691 44.0
MBI04_g37458_MAGBIO Magnolia biondii HOM05D001176 ORTHO05D007019 5.8e-125 451.8 692 43.2
Gohir.D08G170700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 3.8e-124 449.1 662 45.3
Sed0008250 Sechium edule HOM05D001176 ORTHO05D007019 8.4e-124 448.0 689 44.3
Thecc.03G318700 Theobroma cacao HOM05D001176 ORTHO05D007019 8.4e-124 448.0 694 44.2
Lj2g0027044 Lotus japonicus HOM05D001176 ORTHO05D007019 1.9e-123 446.8 694 44.7
TWI79G0428 Tripterygium wilfordii HOM05D001176 ORTHO05D007019 3.2e-123 446.0 689 45.1
Medtr5g025410 Medicago truncatula HOM05D001176 ORTHO05D007019 4.2e-123 445.7 694 45.2
AUR62015049 Chenopodium quinoa HOM05D001176 ORTHO05D007019 7.1e-123 444.9 603 48.1
SalBow4G1488 Salvia bowleyana HOM05D001176 ORTHO05D007019 1.2e-122 444.1 695 43.3
Prupe.1G077200 Prunus persica HOM05D001176 ORTHO05D007019 2.7e-122 443.0 693 44.2
Sabra01G0180800 Salix brachista HOM05D001176 ORTHO05D007019 1.3e-121 440.7 694 44.1
ECA240G2428 Erigeron canadensis HOM05D001176 ORTHO05D007019 1.7e-121 440.3 692 43.6
MELO3C010519.2 Cucumis melo HOM05D001176 ORTHO05D007019 3.0e-121 439.5 694 44.1
Eucgr.D02557 Eucalyptus grandis HOM05D001176 ORTHO05D007019 3.0e-121 439.5 691 43.8
Gorai.004G178200 Gossypium raimondii HOM05D001176 ORTHO05D007019 3.0e-121 439.5 691 43.4
Haze_02517 Corylus avellana HOM05D001176 ORTHO05D007019 3.9e-121 439.1 733 43.7
CsaV3_4G027950 Cucumis sativus L. HOM05D001176 ORTHO05D007019 5.1e-121 438.7 693 43.9
EL10Ac5g11241 Beta vulgaris HOM05D001176 ORTHO05D007019 8.7e-121 438.0 696 43.5
Gohir.D08G170800 Gossypium hirsutum HOM05D001176 ORTHO05D007019 8.7e-121 438.0 691 43.4
PSO732G0580 Papaver somniferum HOM05D001176 ORTHO05D007019 1.1e-120 437.6 694 43.1
Psat2g146720 Pisum sativum HOM05D001176 ORTHO05D007019 1.9e-120 436.8 694 45.1
Potri.004G236600 Populus trichocarpa HOM05D001176 ORTHO05D007019 4.3e-120 435.6 695 43.6
Glyma.11G090100 Glycine max HOM05D001176 ORTHO05D007019 7.3e-120 434.9 692 44.2
Gohir.A08G149700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 7.3e-120 434.9 688 43.2
PGR031G2625 Punica granatum HOM05D001176 ORTHO05D007019 7.3e-120 434.9 697 43.0
Sc21g0000770 Simmondsia chinensis HOM05D001176 ORTHO05D007019 7.3e-120 434.9 691 43.1
Migut.A00530 Erythranthe guttata HOM05D001176 ORTHO05D007019 3.6e-119 432.6 694 43.5
PSO675G7478 Papaver somniferum HOM05D001176 ORTHO05D007019 3.6e-119 432.6 694 42.8
Lalb_Chr16g0380331 Lupinus albus HOM05D001176 ORTHO05D007019 6.2e-119 431.8 695 43.7
Lalb_Chr09g0324961 Lupinus albus HOM05D001176 ORTHO05D007019 1.1e-118 431.0 689 44.0
Aqoxy7G00899 Aquilegia oxysepala HOM05D001176 ORTHO05D007019 1.4e-118 430.6 692 43.5
Ciclev10011152m.g Citrus clementina HOM05D001176 ORTHO05D007019 1.4e-118 430.6 684 44.3
MSTRG.25741 Avicennia marina HOM05D001176 ORTHO05D007019 3.1e-118 429.5 697 42.9
Oeu039635.2 Olea europaea HOM05D001176 ORTHO05D007019 9.0e-118 427.9 741 41.8
Phvul.002G121100 Phaseolus vulgaris HOM05D001176 ORTHO05D007019 3.4e-117 426.0 692 43.9
Lsat_1_v5_gn_9_124460 Lactuca sativa HOM05D001176 ORTHO05D007019 2.9e-116 422.9 707 42.9
ClCG11G016030 Citrullus lanatus HOM05D001176 ORTHO05D007019 6.4e-116 421.8 693 42.9
Ah.05g167880 Amaranthus hybridus HOM05D001176 ORTHO05D007019 1.1e-115 421.0 720 41.0
RcHm_v2.0_Chr6g0304421 Rosa chinensis HOM05D001176 ORTHO05D007019 9.3e-115 417.9 689 42.7
FAN27G0701 Fragaria x ananassa HOM05D001176 ORTHO05D007019 1.6e-114 417.2 687 42.6
Ca_25034_v3 Cicer arietinum L. HOM05D001176 ORTHO05D007019 1.3e-113 414.1 677 43.4
VMungo1215G1610 Vigna mungo HOM05D001176 ORTHO05D007019 1.8e-113 413.7 692 43.4
ATR0665G266 Amborella trichopoda HOM05D001176 ORTHO05D007019 1.6e-111 407.1 694 41.2
FAN20G0920 Fragaria x ananassa HOM05D001176 ORTHO05D007019 1.6e-111 407.1 687 42.1
SGA_v2.0_scaffold96G29093 Striga asiatica HOM05D001176 ORTHO05D007019 2.8e-111 406.4 798 38.1
unitig_748.g7392 Utricularia gibba HOM05D001176 ORTHO05D007019 2.4e-110 403.3 687 40.9
Cpa.g.sc90.31 Carica papaya HOM05D001176 ORTHO05D007019 4.5e-109 399.1 669 41.9
TPR.G8989 Trifolium pratense HOM05D001176 ORTHO05D007019 4.9e-108 395.6 648 43.1
Carub.0001s3008 Capsella rubella HOM05D001176 ORTHO05D007019 3.3e-104 382.9 686 39.7
AT1G31780 Arabidopsis thaliana HOM05D001176 ORTHO05D007019 2.1e-103 380.2 686 39.7
Sp1g27470 Schrenkiella parvula HOM05D001176 ORTHO05D007019 3.7e-103 379.4 686 39.5
BcaB07g32825 Brassica carinata HOM05D001176 ORTHO05D007019 1.1e-102 377.9 686 39.4
CARHR031080 Cardamine hirsuta HOM05D001176 ORTHO05D007019 1.1e-102 377.9 686 39.5
AL1G45850 Arabidopsis lyrata HOM05D001176 ORTHO05D007019 1.4e-102 377.5 686 39.1
A09p34570 Brassica napus HOM05D001176 ORTHO05D007019 3.1e-102 376.3 686 39.5
BraA09t38996Z Brassica rapa HOM05D001176 ORTHO05D007019 3.1e-102 376.3 686 39.5
BcaC05g27192 Brassica carinata HOM05D001176 ORTHO05D007019 4.0e-102 375.9 686 39.5
BolC5t31821H Brassica oleracea HOM05D001176 ORTHO05D007019 4.0e-102 375.9 686 39.5
THA.LOC104798522 Tarenaya hassleriana HOM05D001176 ORTHO05D007019 4.0e-102 375.9 689 39.5
Aa31LG2G14290 Aethionema arabicum HOM05D001176 ORTHO05D007019 1.5e-101 374.0 686 39.4
Actinidia01255 Actinidia chinensis HOM05D001176 ORTHO05D007019 2.6e-101 373.2 554 45.7
Thhalv10006980m.g Eutrema salsugineum HOM05D001176 ORTHO05D007019 1.0e-100 371.3 687 39.0
CDE04G2738 Ceratophyllum demersum HOM05D001176 ORTHO05D007019 6.5e-100 368.6 692 39.0
C05p30980 Brassica napus HOM05D001176 ORTHO05D007019 1.6e-98 364.0 686 38.8
SEGI_32977 Sequoiadendron giganteum HOM05D001176 ORTHO05D007019 3.4e-93 346.3 702 37.2
Zm00001eb009310 Zea mays HOM05D001176 ORTHO05D007019 3.0e-89 333.2 655 38.2
Actinidia32787 Actinidia chinensis HOM05D001176 ORTHO05D007019 2.2e-87 327.0 494 45.1
QL12p003889 Quercus lobata HOM05D001176 ORTHO05D007019 1.8e-81 307.4 496 42.5
Oeu014108.2 Olea europaea HOM05D001176 ORTHO05D007019 4.4e-80 302.8 768 34.4
PGSC0003DMG400001956 Solanum tuberosum HOM05D001176 ORTHO05D007019 4.2e-75 286.2 480 42.7
HPP92_018761 Vanilla planifolia HOM05D001176 ORTHO05D007019 5.2e-73 279.3 556 38.5
Mapoly0009s0222 Marchantia polymorpha HOM05D001176 ORTHO05D007019 4.4e-72 276.2 720 32.1
MD13G1243800 Malus domestica HOM05D001176 ORTHO05D007019 1.6e-69 267.7 475 39.8
Pp3c2_23210 Physcomitrium patens HOM05D001176 ORTHO05D007019 2.6e-69 266.9 722 31.6
CDE07G2068 Ceratophyllum demersum HOM05D004834 ORTHO05D006247 5.9e-69 265.8 481 39.5
MD13G1243900 Malus domestica HOM05D001176 ORTHO05D007019 1.1e-62 245.0 244 57.0
FvH4_2g37280 Fragaria vesca HOM05D001176 ORTHO05D007019 1.8e-62 244.2 539 37.3
Dinv41808 Davidia involucrata HOM05D001176 ORTHO05D007019 1.8e-57 227.6 241 58.5
FAN15G2248 Fragaria x ananassa HOM05D001176 ORTHO05D007019 5.4e-54 216.1 219 57.1
MD13G1244000 Malus domestica HOM05D001176 ORTHO05D007019 9.1e-54 215.3 323 44.6
FAN15G1703 Fragaria x ananassa HOM05D001176 ORTHO05D007019 1.3e-52 211.5 317 44.5
AagrBONN_evm.TU.Sc2ySwM_362.2951 Anthoceros agrestis HOM05D001176 ORTHO05D007019 3.6e-50 203.4 604 28.6
SMO339G0033 Selaginella moellendorffii HOM05D001176 ORTHO05D007019 1.0e-49 201.8 695 27.9
vmacro00085 Vaccinium macrocarpon HOM05D001176 ORTHO05D007019 2.3e-41 174.1 271 44.3
Hund16023 Selenicereus undatus HOM05D001176 ORTHO05D007019 5.2e-41 172.9 202 53.5
Dinv41809 Davidia involucrata HOM05D001176 ORTHO05D007019 3.2e-38 163.7 265 43.0
PRCOL_00001869 Prasinoderma coloniale HOM05D001176 ORTHO05D007019 1.3e-23 115.2 235 35.3
CBR_g61503 Chara braunii HOM05D001176 ORTHO05D007019 4.9e-23 113.2 338 30.2
arahy.Tifrunner.gnm1.ann1.7XHH75 Arachis hypogaea HOM05D001176 ORTHO05D007019 6.4e-23 112.8 140 53.6
arahy.Tifrunner.gnm1.ann1.V0K3WG Arachis hypogaea HOM05D001176 ORTHO05D007019 6.4e-23 112.8 140 53.6
MCO03G158 Micromonas commoda HOM05D001176 ORTHO05D007019 8.4e-23 112.5 238 35.7
CBR_g61501 Chara braunii HOM05D001176 ORTHO05D007019 3.0e-20 104.0 128 47.7
Cre13.g587750 Chlamydomonas reinhardtii HOM05D001176 ORTHO05D007019 6.2e-18 96.3 236 32.2
Os03g0225600 Oryza sativa ssp. japonica HOM05D001176 ORTHO05D007019 1.2e-16 92.0 114 47.4
Glyma.01G154450 Glycine max HOM05D001176 ORTHO05D007019 8.4e-15 85.9 87 63.2
Cc07_g20650 Coffea canephora HOM05D001176 ORTHO05D007019 1.1e-14 85.5 184 37.0
Glyma.01G154551 Glycine max HOM05D001176 ORTHO05D214389 5.4e-14 83.2 73 65.8
CsaV3_4G027980 Cucumis sativus L. HOM05D001176 ORTHO05D007019 1.3e-12 78.6 185 36.2
HPP92_018762 Vanilla planifolia HOM05D001176 ORTHO05D007019 5.1e-12 76.6 84 48.8
TPR.G11479 Trifolium pratense HOM05D001176 ORTHO05D007019 9.0e-09 65.9 58 67.2
CSS0030107 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 7.6e-08 62.8 188 31.4


User provided reference genes

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