Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004933 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 1.1e-159 566.6 298 100.0
CSS0020863 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 2.0e-156 555.8 297 98.7
Actinidia12466 Actinidia chinensis HOM05D004655 ORTHO05D005567 3.5e-129 465.3 294 82.7
CSS0017466 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 3.5e-129 465.3 297 83.2
Actinidia18535 Actinidia chinensis HOM05D004655 ORTHO05D005567 3.9e-128 461.8 293 82.9
Dinv13829 Davidia involucrata HOM05D004655 ORTHO05D005567 1.0e-120 437.2 291 79.7
TAR627G0814 Trochodendron aralioides HOM05D004655 ORTHO05D005567 5.1e-120 434.9 290 80.0
TAR629G1482 Trochodendron aralioides HOM05D004655 ORTHO05D005567 1.5e-119 433.3 294 76.9
QL08p036998 Quercus lobata HOM05D004655 ORTHO05D005567 1.9e-119 433.0 296 77.7
Manes.13G152400 Manihot esculenta HOM05D004655 ORTHO05D005567 3.3e-119 432.2 296 78.7
vmacro12257 Vaccinium macrocarpon HOM05D004655 ORTHO05D005567 3.4e-116 422.2 295 78.6
Atru.chr6.3084 Acer truncatum HOM05D004655 ORTHO05D005567 8.4e-115 417.5 293 75.8
Duzib132G0437 Durio zibethinus HOM05D004655 ORTHO05D005567 1.1e-114 417.2 294 75.5
Duzib132G0466 Durio zibethinus HOM05D004655 ORTHO05D005567 1.1e-114 417.2 294 75.5
Gorai.012G132100 Gossypium raimondii HOM05D004655 ORTHO05D005567 1.1e-114 417.2 294 75.2
Hma1.2p1_0662F.1_g198360 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 2.4e-114 416.0 293 77.5
RcHm_v2.0_Chr2g0161411 Rosa chinensis HOM05D004655 ORTHO05D005567 2.4e-114 416.0 298 75.2
Gohir.A04G106100 Gossypium hirsutum HOM05D004655 ORTHO05D005567 3.2e-114 415.6 294 74.8
Gohir.D04G146200 Gossypium hirsutum HOM05D004655 ORTHO05D005567 3.2e-114 415.6 294 74.8
Lj3g0013026 Lotus japonicus HOM05D004655 ORTHO05D005567 3.2e-114 415.6 291 77.0
Medtr4g045980 Medicago truncatula HOM05D004655 ORTHO05D005567 3.2e-114 415.6 300 73.7
arahy.Tifrunner.gnm1.ann1.81TW8H Arachis hypogaea HOM05D004655 ORTHO05D005567 1.6e-113 413.3 300 72.7
arahy.Tifrunner.gnm1.ann1.S2JPPU Arachis hypogaea HOM05D004655 ORTHO05D005567 1.6e-113 413.3 300 73.0
MBI18_g27693_MAGBIO Magnolia biondii HOM05D004655 ORTHO05D005567 2.7e-113 412.5 299 74.6
Ciclev10016098m.g Citrus clementina HOM05D004655 ORTHO05D005567 6.0e-113 411.4 298 72.8
COL.COLO4_13659 Corchorus olitorius HOM05D004655 ORTHO05D005567 6.0e-113 411.4 298 74.2
FvH4_6g44420 Fragaria vesca HOM05D004655 ORTHO05D005567 6.0e-113 411.4 298 73.8
Thecc.02G170400 Theobroma cacao HOM05D004655 ORTHO05D005567 7.8e-113 411.0 294 75.2
Psat7g149680 Pisum sativum HOM05D004655 ORTHO05D005567 1.3e-112 410.2 288 76.0
FAN14G2207 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.7e-112 409.8 298 73.5
Glyma.06G299100 Glycine max HOM05D004655 ORTHO05D005567 1.7e-112 409.8 287 75.3
Glyma.12G200200 Glycine max HOM05D004655 ORTHO05D005567 1.7e-112 409.8 291 75.6
VMungo1080G0396 Vigna mungo HOM05D004655 ORTHO05D005567 1.7e-112 409.8 293 74.7
Lj3g0017119 Lotus japonicus HOM05D004655 ORTHO05D005567 3.9e-112 408.7 299 72.6
VMungo1127G2245 Vigna mungo HOM05D004655 ORTHO05D005567 6.6e-112 407.9 288 75.3
EL10Ac9g20731 Beta vulgaris HOM05D004655 ORTHO05D005567 8.7e-112 407.5 289 75.4
Cfa014528 Carpinus fangiana HOM05D004655 ORTHO05D005567 1.1e-111 407.1 296 74.3
Phvul.005G108600 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 1.1e-111 407.1 293 75.4
Rhsim06G0153100 Rhododendron simsii HOM05D004655 ORTHO05D005567 1.5e-111 406.8 320 71.9
Glyma.13G302100 Glycine max HOM05D004655 ORTHO05D005567 2.5e-111 406.0 291 74.9
CiPaw.04G122300 Carya illinoinensis HOM05D004655 ORTHO05D005567 3.3e-111 405.6 297 72.1
ClCG00G002920 Citrullus lanatus HOM05D004655 ORTHO05D005567 5.6e-111 404.8 292 74.0
ClCG02G001360 Citrullus lanatus HOM05D004655 ORTHO05D005567 5.6e-111 404.8 292 74.0
MELO3C018772.2 Cucumis melo HOM05D004655 ORTHO05D005567 1.3e-110 403.7 292 73.3
FAN02G3511 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.3e-110 403.7 299 73.2
FAN05G4368 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.3e-110 403.7 299 73.2
Lalb_Chr01g0005451 Lupinus albus HOM05D004655 ORTHO05D005567 1.3e-110 403.7 299 72.9
TWI36G0222 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 1.3e-110 403.7 298 72.8
Eucgr.A01774 Eucalyptus grandis HOM05D004655 ORTHO05D005567 1.6e-110 403.3 305 71.1
Glyma.12G106600 Glycine max HOM05D004655 ORTHO05D005567 1.6e-110 403.3 287 74.9
Phvul.011G110700 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 1.6e-110 403.3 288 74.7
TWI75G0473 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 1.6e-110 403.3 298 73.2
FAN02G1121 Fragaria x ananassa HOM05D004655 ORTHO05D005567 2.8e-110 402.5 299 72.6
PGR042G1100 Punica granatum HOM05D004655 ORTHO05D005567 2.8e-110 402.5 296 72.0
Nn1g03859 Nelumbo nucifera HOM05D004655 ORTHO05D005567 3.6e-110 402.1 297 73.1
CANSAT64G1156 Cannabis sativa HOM05D004655 ORTHO05D005567 4.8e-110 401.7 296 72.3
CiPaw.03G168300 Carya illinoinensis HOM05D004655 ORTHO05D005567 4.8e-110 401.7 292 72.6
Hma1.2p1_0565F.1_g179650 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 6.2e-110 401.4 297 75.8
TPR.G21652 Trifolium pratense HOM05D004655 ORTHO05D005567 6.2e-110 401.4 272 75.7
Potri.019G117900 Populus trichocarpa HOM05D004655 ORTHO05D005567 4.0e-109 398.7 295 73.2
CsaV3_7G004070 Cucumis sativus L. HOM05D004655 ORTHO05D005567 6.9e-109 397.9 292 72.6
Potri.013G148400 Populus trichocarpa HOM05D004655 ORTHO05D005567 2.6e-108 396.0 296 74.0
Prupe.3G228700 Prunus persica HOM05D004655 ORTHO05D005567 2.6e-108 396.0 286 74.1
Lalb_Chr22g0356311 Lupinus albus HOM05D004655 ORTHO05D005567 3.4e-108 395.6 285 73.7
arahy.Tifrunner.gnm1.ann1.YR7HYJ Arachis hypogaea HOM05D004655 ORTHO05D005567 7.6e-108 394.4 293 73.0
MD09G1097200 Malus domestica HOM05D004655 ORTHO05D005567 7.6e-108 394.4 291 71.8
MD17G1085500 Malus domestica HOM05D004655 ORTHO05D005567 1.3e-107 393.7 293 71.0
Haze_13070 Corylus avellana HOM05D004655 ORTHO05D005567 3.8e-107 392.1 355 63.1
Ah.01g005210 Amaranthus hybridus HOM05D004655 ORTHO05D005567 4.9e-107 391.7 293 73.0
Lj1C737G5 Lonicera japonica HOM05D004655 ORTHO05D005567 6.4e-107 391.3 333 67.0
arahy.Tifrunner.gnm1.ann1.XZ54ZU Arachis hypogaea HOM05D004655 ORTHO05D005567 8.4e-107 391.0 293 72.4
AUR62037119 Chenopodium quinoa HOM05D004655 ORTHO05D005567 8.4e-107 391.0 292 72.3
Lsat_1_v5_gn_3_40720 Lactuca sativa HOM05D004655 ORTHO05D005567 1.4e-106 390.2 310 70.0
Sed0025834 Sechium edule HOM05D004655 ORTHO05D005567 1.9e-106 389.8 291 70.8
AUR62032763 Chenopodium quinoa HOM05D004655 ORTHO05D005567 7.1e-106 387.9 289 73.0
PGSC0003DMG400018330 Solanum tuberosum HOM05D004655 ORTHO05D005567 7.1e-106 387.9 297 70.4
ATR0693G119 Amborella trichopoda HOM05D004655 ORTHO05D005567 9.3e-106 387.5 297 68.4
TPR.G18073 Trifolium pratense HOM05D004655 ORTHO05D005567 9.3e-106 387.5 293 71.7
GSVIVG01029990001 Vitis vinifera HOM05D004655 ORTHO05D005567 1.2e-105 387.1 238 81.1
Sopen07g028730 Solanum pennellii HOM05D004655 ORTHO05D005567 1.6e-105 386.7 297 69.7
Nn1g06795 Nelumbo nucifera HOM05D004655 ORTHO05D005567 2.1e-105 386.3 272 77.2
Nn1g06798 Nelumbo nucifera HOM05D004655 ORTHO05D005567 2.1e-105 386.3 272 77.2
Psat5g269080 Pisum sativum HOM05D004655 ORTHO05D005567 2.7e-105 386.0 266 74.1
Migut.H01014 Erythranthe guttata HOM05D004655 ORTHO05D005567 1.0e-104 384.0 293 70.3
Ca_01544_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 1.7e-104 383.3 291 70.4
DCAR_012973 Daucus carota HOM05D004655 ORTHO05D005567 3.0e-104 382.5 300 70.3
Ca_20707_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 8.7e-104 380.9 284 72.9
HanXRQChr06g0171121 Helianthus annuus HOM05D004655 ORTHO05D005567 1.1e-103 380.6 293 70.6
MSTRG.14176 Avicennia marina HOM05D004655 ORTHO05D005567 1.5e-103 380.2 294 70.4
Medtr2g089795 Medicago truncatula HOM05D004655 ORTHO05D005567 4.3e-103 378.6 287 71.1
Cc05_g06070 Coffea canephora HOM05D004655 ORTHO05D005567 2.8e-102 375.9 302 68.5
THA.LOC104804073 Tarenaya hassleriana HOM05D004655 ORTHO05D005567 4.0e-101 372.1 294 67.7
Sabra19G0118300 Salix brachista HOM05D004655 ORTHO05D005567 2.0e-100 369.8 343 61.8
Sabra19G0135300 Salix brachista HOM05D004655 ORTHO05D005567 4.5e-100 368.6 343 61.8
Sc12g0002690 Simmondsia chinensis HOM05D004655 ORTHO05D005567 4.5e-100 368.6 287 70.7
CARHR111640 Cardamine hirsuta HOM05D004655 ORTHO05D005567 5.8e-100 368.2 293 67.2
Sp3g34160 Schrenkiella parvula HOM05D004655 ORTHO05D005567 9.9e-100 367.5 294 67.7
Carub.0003s3556 Capsella rubella HOM05D004655 ORTHO05D005567 2.2e-99 366.3 295 68.5
AT2G20890 Arabidopsis thaliana HOM05D004655 ORTHO05D005567 6.4e-99 364.8 294 67.3
PSO675G0243 Papaver somniferum HOM05D004655 ORTHO05D005567 6.4e-99 364.8 300 66.3
AL3G54160 Arabidopsis lyrata HOM05D004655 ORTHO05D005567 8.4e-99 364.4 294 66.7
ECA246G4617 Erigeron canadensis HOM05D004655 ORTHO05D005567 3.2e-98 362.5 246 76.8
A09p58650 Brassica napus HOM05D004655 ORTHO05D005567 7.1e-98 361.3 291 67.0
BraA09t41251Z Brassica rapa HOM05D004655 ORTHO05D005567 7.1e-98 361.3 291 67.0
Aa31LG8G17800 Aethionema arabicum HOM05D004655 ORTHO05D005567 2.7e-97 359.4 296 66.6
HPP92_012362 Vanilla planifolia HOM05D004655 ORTHO05D005567 4.6e-97 358.6 295 67.1
BcaB08g34948 Brassica carinata HOM05D004655 ORTHO05D005567 6.0e-97 358.2 292 66.1
BcaC07g41186 Brassica carinata HOM05D004655 ORTHO05D005567 1.3e-96 357.1 291 66.7
C08p41940 Brassica napus HOM05D004655 ORTHO05D005567 1.3e-96 357.1 291 66.7
BolC8t51757H Brassica oleracea HOM05D004655 ORTHO05D005567 1.3e-96 357.1 291 66.7
PSO541G1277 Papaver somniferum HOM05D004655 ORTHO05D005567 1.3e-96 357.1 294 66.0
DCAR_019200 Daucus carota HOM05D004655 ORTHO05D005567 3.0e-96 355.9 233 78.1
Thhalv10002049m.g Eutrema salsugineum HOM05D004655 ORTHO05D005567 3.0e-96 355.9 291 67.4
Duzib052G1220 Durio zibethinus HOM05D004655 ORTHO05D005567 6.7e-96 354.8 294 66.3
Aqoxy1G03905 Aquilegia oxysepala HOM05D004655 ORTHO05D005567 1.5e-95 353.6 293 65.5
SGA_v2.0_scaffold34G13911 Striga asiatica HOM05D004655 ORTHO05D005567 4.3e-95 352.1 353 57.5
Os07g0558500 Oryza sativa ssp. japonica HOM05D004655 ORTHO05D005567 1.3e-94 350.5 234 75.2
Zm00001eb324100 Zea mays HOM05D004655 ORTHO05D005567 1.3e-94 350.5 238 73.9
unitig_21.g20001 Utricularia gibba HOM05D004655 ORTHO05D005567 2.1e-94 349.7 293 65.2
SGA_v2.0_scaffold70G23458 Striga asiatica HOM05D004655 ORTHO05D005567 5.3e-93 345.1 270 70.4
Sabra13G0119700 Salix brachista HOM05D004655 ORTHO05D005567 3.4e-92 342.4 298 65.8
Nitab4.5_0000769g0070 Nicotiana tabacum HOM05D004655 ORTHO05D005567 4.9e-91 338.6 295 64.4
SalBow1G2826 Salvia bowleyana HOM05D004655 ORTHO05D005567 8.4e-91 337.8 222 76.6
Peaxi162Scf00007g02516 Petunia axillaris HOM05D004655 ORTHO05D005567 1.4e-90 337.0 330 60.6
CAN.G508.2 Capsicum annuum HOM05D004655 ORTHO05D005567 2.5e-90 336.3 225 75.1
Lj8C118T0 Lonicera japonica HOM05D004655 ORTHO05D005567 8.7e-88 327.8 233 75.1
SalBow7G2858 Salvia bowleyana HOM05D004655 ORTHO05D005567 2.8e-86 322.8 263 65.0
Duzib248G0290 Durio zibethinus HOM05D004655 ORTHO05D005567 1.1e-85 320.9 230 72.2
FAN09G1462 Fragaria x ananassa HOM05D004655 ORTHO05D005567 2.0e-84 316.6 299 62.2
Ah.01g014420 Amaranthus hybridus HOM05D004655 ORTHO05D005567 1.4e-82 310.5 230 72.2
Nitab4.5_0001019g0090 Nicotiana tabacum HOM05D004655 ORTHO05D005567 3.6e-81 305.8 220 72.3
Pp3c19_17570 Physcomitrium patens HOM05D004655 ORTHO05D005567 1.1e-79 300.8 227 66.1
Mapoly0010s0156 Marchantia polymorpha HOM05D004655 ORTHO05D005567 8.2e-78 294.7 241 63.9
SMO266G0053 Selaginella moellendorffii HOM05D004655 ORTHO05D005567 1.1e-77 294.3 201 72.1
Pp3c21_14540 Physcomitrium patens HOM05D004655 ORTHO05D005567 3.1e-77 292.7 214 68.2
Sc12g0003940 Simmondsia chinensis HOM05D004655 ORTHO05D005567 4.5e-76 288.9 232 67.2
Zm00001eb106830 Zea mays HOM05D004655 ORTHO05D005567 5.0e-75 285.4 184 77.2
AagrBONN_evm.TU.Sc2ySwM_344.251 Anthoceros agrestis HOM05D004655 ORTHO05D005567 8.5e-75 284.6 266 57.9
Dinv15502 Davidia involucrata HOM05D004655 ORTHO05D005567 1.0e-72 277.7 186 79.6
AUR62032764 Chenopodium quinoa HOM05D001718 ORTHO05D008006 5.1e-72 275.4 266 60.5
AUR62037125 Chenopodium quinoa HOM05D001718 ORTHO05D008006 1.1e-71 274.2 265 61.1
Cpa.g.sc34.80 Carica papaya HOM05D004655 ORTHO05D005567 1.3e-70 270.8 189 74.6
CBR_g78876 Chara braunii HOM05D004655 ORTHO05D005567 1.4e-56 224.2 228 50.4
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 2.6e-55 219.9 212 51.9
Cre13.g562850 Chlamydomonas reinhardtii HOM05D004655 ORTHO05D005567 2.1e-49 200.3 239 46.9
CDE05G0433 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 4.7e-49 199.1 179 59.2
CDE05G0437 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 5.7e-47 192.2 151 65.6
MCO07G428 Micromonas commoda HOM05D004655 ORTHO05D005567 6.3e-38 162.2 216 41.7
SEGI_32441 Sequoiadendron giganteum HOM05D004655 ORTHO05D005567 2.0e-36 157.1 163 55.8
Cpa.g.sc34.79 Carica papaya HOM05D004655 ORTHO05D005567 2.6e-23 113.6 70 81.4
Sed0002097 Sechium edule HOM05D004655 ORTHO05D005567 1.3e-22 111.3 156 46.8
VMungo0720G1089 Vigna mungo HOM05D004655 ORTHO05D005567 4.1e-21 106.3 59 91.5
ClCG02G001370 Citrullus lanatus HOM05D004655 ORTHO05D005567 7.8e-20 102.1 64 82.8
Sabra19G0118700 Salix brachista HOM05D004655 ORTHO05D005567 6.4e-14 82.4 117 46.2
Oeu029438.1 Olea europaea HOM05D004655 ORTHO05D005567 3.0e-11 73.6 48 70.8
Hma1.2p1_0479F.1_g161430 Hydrangea macrophylla HOM05D001315 ORTHO05D001618 1.1e-10 71.6 52 71.2


User provided reference genes

Program Settings