Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004921 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 5.7e-40 167.2 86 100.0
Hma1.2p1_0543F.1_g175360 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 2.5e-35 151.8 86 88.4
Dinv34317 Davidia involucrata HOM05D004551 ORTHO05D005262 1.2e-34 149.4 86 87.2
Prupe.6G065200 Prunus persica HOM05D004551 ORTHO05D005262 1.2e-34 149.4 85 82.4
QL01p028907 Quercus lobata HOM05D004551 ORTHO05D005262 1.6e-34 149.1 88 88.6
CiPaw.13G084300 Carya illinoinensis HOM05D004551 ORTHO05D005262 2.1e-34 148.7 86 88.4
HanXRQChr08g0237601 Helianthus annuus HOM05D004551 ORTHO05D005262 2.1e-34 148.7 86 81.4
GSVIVG01024832001 Vitis vinifera HOM05D004551 ORTHO05D005262 2.1e-34 148.7 84 90.5
MD11G1085200 Malus domestica HOM05D004551 ORTHO05D005262 2.7e-34 148.3 86 87.2
CiPaw.14G063000 Carya illinoinensis HOM05D004551 ORTHO05D005262 3.6e-34 147.9 86 88.4
Lsat_1_v5_gn_9_25241 Lactuca sativa HOM05D004551 ORTHO05D005262 4.7e-34 147.5 86 80.2
HanXRQChr09g0243371 Helianthus annuus HOM05D004551 ORTHO05D005262 8.0e-34 146.7 86 80.2
HanXRQChr09g0243381 Helianthus annuus HOM05D004551 ORTHO05D005262 8.0e-34 146.7 86 80.2
HanXRQChr02g0055991 Helianthus annuus HOM05D004551 ORTHO05D005262 1.8e-33 145.6 86 80.2
Actinidia08554 Actinidia chinensis HOM05D004551 ORTHO05D005262 3.0e-33 144.8 85 88.2
Hma1.2p1_1521F.1_g288710 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 3.0e-33 144.8 84 79.8
MELO3C020586.2 Cucumis melo HOM05D004551 ORTHO05D005262 6.7e-33 143.7 86 84.9
CsaV3_1G035840 Cucumis sativus L. HOM05D004551 ORTHO05D005262 6.7e-33 143.7 86 84.9
Oeu017418.1 Olea europaea HOM05D004551 ORTHO05D005262 6.7e-33 143.7 86 76.7
Nn2g13555 Nelumbo nucifera HOM05D004551 ORTHO05D005262 1.1e-32 142.9 84 86.9
Sed0000742 Sechium edule HOM05D004551 ORTHO05D005262 1.5e-32 142.5 86 82.6
ClCG03G001090 Citrullus lanatus HOM05D004551 ORTHO05D005262 2.6e-32 141.7 86 83.7
Dinv35533 Davidia involucrata HOM05D004551 ORTHO05D005262 2.6e-32 141.7 84 78.6
MBI05_g10286_MAGBIO Magnolia biondii HOM05D004551 ORTHO05D005262 5.7e-32 140.6 84 78.6
Oeu036200.1 Olea europaea HOM05D004551 ORTHO05D005262 7.4e-32 140.2 84 76.2
Migut.J00249 Erythranthe guttata HOM05D004551 ORTHO05D005262 1.3e-31 139.4 86 73.3
Lalb_Chr24g0397121 Lupinus albus HOM05D004551 ORTHO05D005262 3.7e-31 137.9 84 73.8
RcHm_v2.0_Chr5g0067321 Rosa chinensis HOM05D004551 ORTHO05D005262 3.7e-31 137.9 84 82.1
CSS0032515 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 6.3e-31 137.1 84 73.8
Glyma.02G308400 Glycine max HOM05D004551 ORTHO05D005262 1.8e-30 135.6 84 76.2
Lj3g0011983 Lotus japonicus HOM05D004551 ORTHO05D005262 1.8e-30 135.6 79 79.7
FvH4_3g37430 Fragaria vesca HOM05D004551 ORTHO05D005262 3.1e-30 134.8 79 78.5
FAN11G1128 Fragaria x ananassa HOM05D004551 ORTHO05D005262 3.1e-30 134.8 79 78.5
FAN16G1443 Fragaria x ananassa HOM05D004551 ORTHO05D005262 3.1e-30 134.8 79 78.5
FAN25G2220 Fragaria x ananassa HOM05D004551 ORTHO05D005262 3.1e-30 134.8 79 78.5
FAN16G2867 Fragaria x ananassa HOM05D004551 ORTHO05D005262 4.1e-30 134.4 78 78.2
Lj4g0001727 Lotus japonicus HOM05D004551 ORTHO05D005262 4.1e-30 134.4 79 78.5
Eucgr.B02289 Eucalyptus grandis HOM05D004551 ORTHO05D005262 5.3e-30 134.0 86 80.2
Glyma.13G339700 Glycine max HOM05D004551 ORTHO05D005262 5.3e-30 134.0 84 75.0
SalBow1G6960 Salvia bowleyana HOM05D004551 ORTHO05D005262 5.3e-30 134.0 86 70.9
CDE02G0008 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 9.1e-30 133.3 86 69.8
Cc01_g13610 Coffea canephora HOM05D004551 ORTHO05D005262 2.6e-29 131.7 76 88.2
CANSAT54G1854 Cannabis sativa HOM05D004551 ORTHO05D005262 3.5e-29 131.3 84 79.8
Glyma.15G034700 Glycine max HOM05D004551 ORTHO05D005262 3.5e-29 131.3 84 73.8
Pp3c1_35930 Physcomitrium patens HOM05D004551 ORTHO05D005262 4.5e-29 131.0 85 69.4
Ca_01298_v3 Cicer arietinum L. HOM05D004551 ORTHO05D005262 5.9e-29 130.6 86 69.8
Psat5g285840 Pisum sativum HOM05D004551 ORTHO05D005262 7.7e-29 130.2 83 72.3
Glyma.14G004700 Glycine max HOM05D004551 ORTHO05D005262 1.3e-28 129.4 84 72.6
CDE04G2361 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 1.7e-28 129.0 76 75.0
Cc06_g01910 Coffea canephora HOM05D004551 ORTHO05D005262 1.7e-28 129.0 84 72.6
PSO339G1751 Papaver somniferum HOM05D004551 ORTHO05D005262 1.7e-28 129.0 75 77.3
PSO384G2886 Papaver somniferum HOM05D004551 ORTHO05D005262 1.7e-28 129.0 75 77.3
Rhsim04G0164100 Rhododendron simsii HOM05D004551 ORTHO05D005262 1.7e-28 129.0 86 68.6
Migut.L01982 Erythranthe guttata HOM05D004551 ORTHO05D005262 2.2e-28 128.6 79 72.2
unitig_578.g15888 Utricularia gibba HOM05D004551 ORTHO05D005262 2.2e-28 128.6 79 73.4
Sopen06g001810 Solanum pennellii HOM05D004551 ORTHO05D005262 2.9e-28 128.3 86 70.9
Phvul.008G288300 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 3.8e-28 127.9 84 70.2
FAN21G1099 Fragaria x ananassa HOM05D004551 ORTHO05D005262 5.0e-28 127.5 73 80.8
Nitab4.5_0002152g0070 Nicotiana tabacum HOM05D004551 ORTHO05D005262 5.0e-28 127.5 76 73.7
Solyc06g005840.4 Solanum lycopersicum HOM05D004551 ORTHO05D005262 5.0e-28 127.5 86 70.9
arahy.Tifrunner.gnm1.ann1.S44GTI Arachis hypogaea HOM05D004551 ORTHO05D005262 8.5e-28 126.7 93 65.6
Zm00001eb211450 Zea mays HOM05D004551 ORTHO05D005262 1.5e-27 125.9 86 72.1
PGSC0003DMG400020830 Solanum tuberosum HOM05D004551 ORTHO05D005262 1.9e-27 125.6 84 71.4
Solyc09g011760.3 Solanum lycopersicum HOM05D004551 ORTHO05D005262 2.5e-27 125.2 77 71.4
Sopen09g006580 Solanum pennellii HOM05D004551 ORTHO05D005262 2.5e-27 125.2 77 71.4
arahy.Tifrunner.gnm1.ann1.CMV3ZL Arachis hypogaea HOM05D004551 ORTHO05D005262 3.2e-27 124.8 93 64.5
Peaxi162Scf01302g00041 Petunia axillaris HOM05D004551 ORTHO05D005262 3.2e-27 124.8 76 72.4
Gohir.A03G047200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 4.2e-27 124.4 85 68.2
Gorai.003G126500 Gossypium raimondii HOM05D004551 ORTHO05D005262 4.2e-27 124.4 85 68.2
Os03g0825400 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 4.2e-27 124.4 86 76.7
Sc12g0001090 Simmondsia chinensis HOM05D004551 ORTHO05D005262 4.2e-27 124.4 84 77.4
PGSC0003DMG402020339 Solanum tuberosum HOM05D004551 ORTHO05D005262 4.2e-27 124.4 77 70.1
TWI75G0664 Tripterygium wilfordii HOM05D004551 ORTHO05D005262 4.2e-27 124.4 85 65.9
THA.LOC104800711 Tarenaya hassleriana HOM05D004551 ORTHO05D005262 5.5e-27 124.0 84 66.7
TPR.G6876 Trifolium pratense HOM05D004551 ORTHO05D005262 7.2e-27 123.6 79 70.9
Aa31LG5G6930 Aethionema arabicum HOM05D004551 ORTHO05D005262 1.2e-26 122.9 84 65.5
Sp4g12260 Schrenkiella parvula HOM05D004551 ORTHO05D005262 1.2e-26 122.9 86 65.1
Hund18875 Selenicereus undatus HOM05D004551 ORTHO05D005262 1.2e-26 122.9 84 65.5
Duzib150G1644 Durio zibethinus HOM05D004551 ORTHO05D005262 1.6e-26 122.5 85 75.3
Thhalv10017490m.g Eutrema salsugineum HOM05D004551 ORTHO05D005262 1.6e-26 122.5 86 65.1
Sed0006275 Sechium edule HOM05D004551 ORTHO05D005262 1.6e-26 122.5 72 84.7
AL4G24240 Arabidopsis lyrata HOM05D004551 ORTHO05D005262 2.7e-26 121.7 86 65.1
Duzib168G2386 Durio zibethinus HOM05D004551 ORTHO05D005262 2.7e-26 121.7 85 67.1
Ciclev10029702m.g Citrus clementina HOM05D004551 ORTHO05D005262 3.6e-26 121.3 87 70.1
Dinv17073 Davidia involucrata HOM05D004551 ORTHO05D005262 4.7e-26 120.9 70 78.6
Dinv43017 Davidia involucrata HOM05D004551 ORTHO05D005262 4.7e-26 120.9 70 78.6
Medtr2g097870 Medicago truncatula HOM05D004551 ORTHO05D005262 4.7e-26 120.9 80 68.8
Gohir.A05G091300 Gossypium hirsutum HOM05D004551 ORTHO05D005262 6.1e-26 120.6 85 67.1
Gohir.D05G092200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 6.1e-26 120.6 85 67.1
Gorai.009G094700 Gossypium raimondii HOM05D004551 ORTHO05D005262 6.1e-26 120.6 85 67.1
A04p22520 Brassica napus HOM05D004551 ORTHO05D005262 8.0e-26 120.2 86 62.8
vmacro08615 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 8.0e-26 120.2 82 67.1
CARHR122870 Cardamine hirsuta HOM05D004551 ORTHO05D005262 1.0e-25 119.8 82 65.9
Thecc.09G309400 Theobroma cacao HOM05D004551 ORTHO05D005262 1.0e-25 119.8 82 68.3
EL10Ac7g16095 Beta vulgaris HOM05D004551 ORTHO05D005262 1.4e-25 119.4 84 66.7
A05p15870 Brassica napus HOM05D004551 ORTHO05D005262 1.8e-25 119.0 86 64.0
vmacro03012 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 1.8e-25 119.0 70 77.1
AT2G29530 Arabidopsis thaliana HOM05D004551 ORTHO05D005262 3.0e-25 118.2 80 67.5
Os07g0243100 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 3.0e-25 118.2 76 72.4
Duzib170G1093 Durio zibethinus HOM05D004551 ORTHO05D005262 4.0e-25 117.9 85 71.8
COL.COLO4_19068 Corchorus olitorius HOM05D004551 ORTHO05D005262 6.7e-25 117.1 87 66.7
C04p21310 Brassica napus HOM05D004551 ORTHO05D005262 1.5e-24 115.9 84 63.1
Carub.0004s1058 Capsella rubella HOM05D004551 ORTHO05D005262 2.0e-24 115.5 86 61.6
Glyma.15G229800 Glycine max HOM05D004551 ORTHO05D005262 2.6e-24 115.2 68 79.4
AagrBONN_evm.TU.Sc2ySwM_117.3522 Anthoceros agrestis HOM05D004551 ORTHO05D005262 3.3e-24 114.8 86 61.6
Potri.009G039600 Populus trichocarpa HOM05D004551 ORTHO05D005262 3.3e-24 114.8 87 62.1
unitig_8.g4441 Utricularia gibba HOM05D004551 ORTHO05D005262 4.4e-24 114.4 92 62.0
BcaB02g10259 Brassica carinata HOM05D004551 ORTHO05D005262 5.7e-24 114.0 84 60.7
BolC4t27387H Brassica oleracea HOM05D004551 ORTHO05D005262 5.7e-24 114.0 95 56.8
Haze_24227 Corylus avellana HOM05D004551 ORTHO05D005262 7.5e-24 113.6 68 77.9
MD03G1080700 Malus domestica HOM05D004551 ORTHO05D005262 7.5e-24 113.6 63 81.0
DCAR_005918 Daucus carota HOM05D004551 ORTHO05D005262 1.3e-23 112.8 97 66.0
Nitab4.5_0002405g0130 Nicotiana tabacum HOM05D004551 ORTHO05D005262 1.3e-23 112.8 67 76.1
Mapoly0052s0053 Marchantia polymorpha HOM05D004551 ORTHO05D005262 1.7e-23 112.5 74 63.5
C04p58670 Brassica napus HOM05D004551 ORTHO05D005262 3.7e-23 111.3 98 55.1
CAN.G978.3 Capsicum annuum HOM05D004551 ORTHO05D005262 3.7e-23 111.3 65 75.4
ECA247G0999 Erigeron canadensis HOM05D004551 ORTHO05D005262 3.7e-23 111.3 85 69.4
Potri.001G246500 Populus trichocarpa HOM05D004551 ORTHO05D005262 3.7e-23 111.3 87 59.8
HPP92_018167 Vanilla planifolia HOM05D004551 ORTHO05D005262 3.7e-23 111.3 69 78.3
Atru.chr3.4045 Acer truncatum HOM05D004551 ORTHO05D005262 4.8e-23 110.9 88 70.5
Aqoxy1G00774 Aquilegia oxysepala HOM05D004551 ORTHO05D005262 6.3e-23 110.5 76 67.1
Lalb_Chr22g0352421 Lupinus albus HOM05D004551 ORTHO05D005262 6.3e-23 110.5 68 72.1
PGR102G3288 Punica granatum HOM05D004551 ORTHO05D005262 1.4e-22 109.4 69 82.6
Manes.01G166600 Manihot esculenta HOM05D004551 ORTHO05D005262 7.0e-22 107.1 86 58.1
Manes.02G124000 Manihot esculenta HOM05D004551 ORTHO05D005262 2.0e-21 105.5 86 55.8
Ah.15g090420 Amaranthus hybridus HOM05D004551 ORTHO05D005262 2.7e-21 105.1 77 58.4
BraA04t17797Z Brassica rapa HOM05D004551 ORTHO05D005262 2.7e-21 105.1 115 47.0
BcaB06g28317 Brassica carinata HOM05D004551 ORTHO05D005262 1.5e-19 99.4 84 60.7
ECA236G0522 Erigeron canadensis HOM05D004551 ORTHO05D005262 1.5e-19 99.4 74 67.6
SMO172G0051 Selaginella moellendorffii HOM05D004551 ORTHO05D005262 1.5e-19 99.4 72 63.9
AUR62020055 Chenopodium quinoa HOM05D004551 ORTHO05D005262 5.5e-19 97.4 67 67.2
Sabra16G0149600 Salix brachista HOM05D004551 ORTHO05D005262 1.6e-18 95.9 71 63.4
BraA05t20500Z Brassica rapa HOM05D004551 ORTHO05D005262 3.6e-18 94.7 87 55.2
Phvul.L008843 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 3.6e-18 94.7 84 60.7
Gohir.D03G120000 Gossypium hirsutum HOM05D004551 ORTHO05D005262 8.0e-18 93.6 85 57.6
QL02p091823 Quercus lobata HOM05D000741 ORTHO05D000506 1.0e-17 93.2 53 79.2
Nitab4.5_0000880g0120 Nicotiana tabacum HOM05D004551 ORTHO05D005262 1.4e-17 92.8 55 76.4
Oeu030799.1 Olea europaea HOM05D004551 ORTHO05D005262 1.4e-17 92.8 52 78.8
QL02p079044 Quercus lobata HOM05D004551 ORTHO05D005262 1.4e-17 92.8 52 80.8
Zm00001eb063090 Zea mays HOM05D004551 ORTHO05D005262 1.4e-17 92.8 86 60.5
HPP92_018179 Vanilla planifolia HOM05D004551 ORTHO05D005262 4.4e-16 87.8 57 73.7
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 4.4e-16 87.8 54 70.4
CBR_g3168 Chara braunii HOM05D004551 ORTHO05D005262 7.5e-16 87.0 75 48.0
MCO07G332 Micromonas commoda HOM05D004551 ORTHO05D005262 1.3e-15 86.3 69 47.8
Ah.13g070320 Amaranthus hybridus HOM05D004551 ORTHO05D005262 1.7e-15 85.9 56 71.4
MD02G1203300 Malus domestica HOM05D004551 ORTHO05D005262 2.2e-15 85.5 52 78.8
Rhsim13G0075400 Rhododendron simsii HOM05D004551 ORTHO05D005262 6.3e-15 84.0 70 61.4
EL10Ac7g17098 Beta vulgaris HOM05D004551 ORTHO05D005262 3.1e-14 81.6 97 46.4
AUR62001717 Chenopodium quinoa HOM05D004551 ORTHO05D005262 1.2e-13 79.7 100 44.0
BolC4t23660H Brassica oleracea HOM05D004551 ORTHO05D005262 1.3e-12 76.3 54 61.1
SGA_v2.0_scaffold75G24985 Striga asiatica HOM05D001002 ORTHO05D000802 2.3e-12 75.5 47 66.0
DCAR_007410 Daucus carota HOM05D004551 ORTHO05D005262 5.0e-12 74.3 72 54.2
Cre12.g514900 Chlamydomonas reinhardtii HOM05D004551 ORTHO05D005262 1.1e-11 73.2 64 48.4
TPR.G13621 Trifolium pratense HOM05D004551 ORTHO05D005262 2.3e-09 65.5 59 57.6
PRCOL_00001542 Prasinoderma coloniale HOM05D002457 ORTHO05D005262 4.0e-09 64.7 59 54.2
MELO3C035440.2 Cucumis melo HOM05D004551 ORTHO05D005262 9.8e-08 60.1 116 37.9
SHI22087 Sapria himalayana HOM05D004551 ORTHO05D005262 1.7e-07 59.3 64 42.2


User provided reference genes

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