Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004912 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 0.0e+00 1525.8 791 100.0
CSS0024724 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 0.0e+00 1414.8 791 93.6
CSS0017117 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 0.0e+00 1272.3 791 85.3
CSS0049410 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 0.0e+00 1269.6 791 85.2
CSS0022979 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 0.0e+00 1243.4 791 83.6
CSS0041949 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 8.8e-188 661.4 369 87.3
CSS0031809 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D108891 6.7e-127 459.1 422 68.5
CSS0031977 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D112456 1.7e-122 444.5 406 67.5
CSS0043274 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D111155 1.7e-122 444.5 406 67.5
CSS0018317 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D110529 1.9e-121 441.0 406 67.2
CSS0042992 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D111024 1.4e-116 424.9 406 65.8
CSS0026356 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D112650 7.8e-51 206.5 582 32.1
CSS0014082 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D112965 6.4e-45 186.8 597 33.0
Solyc05g010817.1 Solanum lycopersicum HOM05D008778 ORTHO05D003639 1.9e-20 105.5 230 30.0
Sopen00g002430 Solanum pennellii HOM05D008778 ORTHO05D003639 4.2e-20 104.4 230 30.0
Sopen00g007290 Solanum pennellii HOM05D008778 ORTHO05D003639 4.2e-20 104.4 230 30.0
Peaxi162Scf00820g00117 Petunia axillaris HOM05D008778 ORTHO05D003639 2.7e-19 101.7 230 27.4
Sopen09g003880 Solanum pennellii HOM05D008778 ORTHO05D003639 3.5e-19 101.3 230 30.9
Peaxi162Scf00820g00119 Petunia axillaris HOM05D008778 ORTHO05D003639 1.3e-18 99.4 234 28.6
FvH4_3g26742 Fragaria vesca HOM05D016656 ORTHO05D003639 1.1e-17 96.3 232 29.7
Nitab4.5_0001698g0060 Nicotiana tabacum HOM05D008778 ORTHO05D003639 9.6e-17 93.2 234 27.4
QL01p013702 Quercus lobata HOM05D009149 ORTHO05D003639 3.1e-15 88.2 237 28.7
Nitab4.5_0001698g0030 Nicotiana tabacum HOM05D008778 ORTHO05D003639 5.3e-15 87.4 232 27.2
Nitab4.5_0000663g0030 Nicotiana tabacum HOM05D008778 ORTHO05D003639 1.5e-14 85.9 230 28.3
Peaxi162Scf00169g01112 Petunia axillaris HOM05D008778 ORTHO05D003639 2.6e-14 85.1 236 28.0
Nitab4.5_0000663g0010 Nicotiana tabacum HOM05D008778 ORTHO05D003639 2.2e-13 82.0 233 28.8
Sabra13G0012400 Salix brachista HOM05D020966 ORTHO05D010251 2.9e-13 81.6 315 26.3
Nitab4.5_0001698g0040 Nicotiana tabacum HOM05D008778 ORTHO05D003639 8.4e-13 80.1 232 25.9
Sopen09g003890 Solanum pennellii HOM05D000006 ORTHO05D000001 7.1e-12 77.0 367 23.7
CSS0044889 Camellia sinensis var. sinensis HOM05D008778 ORTHO05D003639 1.2e-11 76.3 532 23.7
PGSC0003DMG400002681 Solanum tuberosum HOM05D008778 ORTHO05D003639 3.5e-11 74.7 379 23.0
FAN25G0588 Fragaria x ananassa HOM05D016656 ORTHO05D003639 3.0e-10 71.6 177 30.5
RcHm_v2.0_Chr1g0321631 Rosa chinensis HOM05D008702 ORTHO05D003639 6.7e-10 70.5 188 28.7
RcHm_v2.0_Chr2g0121071 Rosa chinensis HOM05D008702 ORTHO05D003639 9.6e-09 66.6 354 23.4
Cc00_g19240 Coffea canephora HOM05D009149 ORTHO05D003639 2.1e-08 65.5 224 24.6
Nitab4.5_0007634g0020 Nicotiana tabacum HOM05D008778 ORTHO05D003639 2.8e-08 65.1 167 28.7
RcHm_v2.0_Chr2g0142701 Rosa chinensis HOM05D008702 ORTHO05D003639 2.8e-08 65.1 238 27.7
RcHm_v2.0_Chr1g0320431 Rosa chinensis HOM05D008702 ORTHO05D003639 4.8e-08 64.3 188 28.2
RcHm_v2.0_Chr2g0116581 Rosa chinensis HOM05D008702 ORTHO05D003639 1.4e-07 62.8 354 23.4
RcHm_v2.0_Chr2g0138191 Rosa chinensis HOM05D008702 ORTHO05D003639 1.4e-07 62.8 354 22.9
RcHm_v2.0_Chr7g0194611 Rosa chinensis HOM05D009149 ORTHO05D003639 2.4e-07 62.0 246 26.8
Nitab4.5_0006587g0010 Nicotiana tabacum HOM05D008778 ORTHO05D003639 3.1e-07 61.6 163 24.5
Peaxi162Scf00820g00045 Petunia axillaris HOM05D008778 ORTHO05D003639 6.9e-07 60.5 240 27.1
RcHm_v2.0_Chr2g0152981 Rosa chinensis HOM05D008702 ORTHO05D003639 6.9e-07 60.5 352 23.0
FvH4_4g18552 Fragaria vesca HOM05D009149 ORTHO05D003639 1.5e-06 59.3 185 28.1
FAN19G0432 Fragaria x ananassa HOM05D016497 ORTHO05D019154 2.0e-06 58.9 171 27.5
RcHm_v2.0_Chr2g0105541 Rosa chinensis HOM05D009149 ORTHO05D003639 4.5e-06 57.8 177 27.7
RcHm_v2.0_Chr3g0493631 Rosa chinensis HOM05D009149 ORTHO05D003639 4.5e-06 57.8 248 27.0
FAN25G3366 Fragaria x ananassa HOM05D016656 ORTHO05D015012 1.0e-05 56.6 106 34.9


User provided reference genes

Program Settings