Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004905 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 8.3e-41 169.9 81 100.0
CSS0000450 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 7.0e-40 166.8 79 100.0
CSS0001609 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 1.2e-15 86.3 44 90.9
CSS0022214 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 1.2e-15 86.3 44 90.9
CSS0031875 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 1.2e-15 86.3 44 90.9
CSS0014298 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 2.7e-15 85.1 44 93.2
CSS0017714 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 3.5e-15 84.7 43 90.7
CANSAT21G2039 Cannabis sativa HOM05D003558 ORTHO05D004392 1.0e-14 83.2 44 88.6
Lj8A204G66 Lonicera japonica HOM05D003558 ORTHO05D004392 1.0e-14 83.2 44 88.6
Sc01g0010420 Simmondsia chinensis HOM05D003558 ORTHO05D004392 1.0e-14 83.2 44 88.6
MSTRG.1797 Avicennia marina HOM05D003558 ORTHO05D004392 2.3e-14 82.0 44 86.4
CSS0024989 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 2.3e-14 82.0 44 86.4
Dinv38812 Davidia involucrata HOM05D003558 ORTHO05D004392 2.3e-14 82.0 44 86.4
Eucgr.E00889 Eucalyptus grandis HOM05D003558 ORTHO05D004392 2.3e-14 82.0 44 86.4
Hma1.2p1_0440F.1_g153570 Hydrangea macrophylla HOM05D003558 ORTHO05D004392 2.3e-14 82.0 44 86.4
Lalb_Chr12g0208821 Lupinus albus HOM05D003558 ORTHO05D004392 2.3e-14 82.0 44 86.4
MD06G1111600 Malus domestica HOM05D003558 ORTHO05D004392 2.3e-14 82.0 44 86.4
MD14G1132800 Malus domestica HOM05D003558 ORTHO05D004392 2.3e-14 82.0 44 86.4
Medtr1g016750 Medicago truncatula HOM05D003558 ORTHO05D004392 2.3e-14 82.0 44 86.4
Psat6g019440 Pisum sativum HOM05D003558 ORTHO05D004392 2.3e-14 82.0 44 86.4
Prupe.5G124300 Prunus persica HOM05D003558 ORTHO05D004392 2.3e-14 82.0 44 86.4
QL02p029625 Quercus lobata HOM05D003558 ORTHO05D004392 2.3e-14 82.0 44 86.4
QL05p030756 Quercus lobata HOM05D003558 ORTHO05D004392 2.3e-14 82.0 44 86.4
SalBow8G5190 Salvia bowleyana HOM05D003558 ORTHO05D004392 2.3e-14 82.0 44 86.4
TPR.G13178 Trifolium pratense HOM05D003558 ORTHO05D004392 2.3e-14 82.0 44 86.4
TAR375G0349 Trochodendron aralioides HOM05D003558 ORTHO05D004392 2.3e-14 82.0 44 86.4
HPP92_006339 Vanilla planifolia HOM05D003558 ORTHO05D004392 2.3e-14 82.0 44 86.4
HPP92_027865 Vanilla planifolia HOM05D003558 ORTHO05D004392 2.3e-14 82.0 44 86.4
GSVIVG01019594001 Vitis vinifera HOM05D003558 ORTHO05D004392 2.3e-14 82.0 44 86.4
MSTRG.13893 Avicennia marina HOM05D003558 ORTHO05D004392 3.0e-14 81.6 44 86.4
CSS0013121 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 3.0e-14 81.6 44 88.6
Cc08_g16370 Coffea canephora HOM05D003558 ORTHO05D004392 3.0e-14 81.6 44 84.1
Duzib177G1044 Durio zibethinus HOM05D003558 ORTHO05D004392 3.0e-14 81.6 44 86.4
Lsat_1_v5_gn_3_12881 Lactuca sativa HOM05D003558 ORTHO05D004392 3.0e-14 81.6 44 84.1
Oeu041397.1 Olea europaea HOM05D003558 ORTHO05D004392 3.0e-14 81.6 43 88.4
SGA_v2.0_scaffold111G31394 Striga asiatica HOM05D003558 ORTHO05D004392 3.0e-14 81.6 43 88.4
vmacro13883 Vaccinium macrocarpon HOM05D003558 ORTHO05D004392 3.0e-14 81.6 44 86.4
vmacro21480 Vaccinium macrocarpon HOM05D003558 ORTHO05D004392 3.0e-14 81.6 44 86.4
HanXRQChr15g0472881 Helianthus annuus HOM05D003558 ORTHO05D004392 3.9e-14 81.3 45 82.2
PSO170G3792 Papaver somniferum HOM05D003558 ORTHO05D004392 3.9e-14 81.3 43 88.4
Actinidia22185 Actinidia chinensis HOM05D003558 ORTHO05D005715 5.0e-14 80.9 44 84.1
arahy.Tifrunner.gnm1.ann1.HE7D3F Arachis hypogaea HOM05D003558 ORTHO05D004392 5.0e-14 80.9 44 84.1
arahy.Tifrunner.gnm1.ann1.R1RJVJ Arachis hypogaea HOM05D003558 ORTHO05D004392 5.0e-14 80.9 44 84.1
Dinv37501 Davidia involucrata HOM05D003558 ORTHO05D004392 5.0e-14 80.9 44 84.1
ECA246G0145 Erigeron canadensis HOM05D003558 ORTHO05D004392 5.0e-14 80.9 44 84.1
Glyma.05G127300 Glycine max HOM05D003558 ORTHO05D004392 5.0e-14 80.9 44 84.1
Glyma.08G082000 Glycine max HOM05D003558 ORTHO05D004392 5.0e-14 80.9 44 84.1
HanXRQChr14g0460421 Helianthus annuus HOM05D003558 ORTHO05D004392 5.0e-14 80.9 44 84.1
Lj4g0003124 Lotus japonicus HOM05D003558 ORTHO05D004392 5.0e-14 80.9 44 84.1
Phvul.002G197600 Phaseolus vulgaris HOM05D003558 ORTHO05D004392 5.0e-14 80.9 44 84.1
TAR374G0657 Trochodendron aralioides HOM05D003558 ORTHO05D004392 5.0e-14 80.9 44 84.1
VMungo0251G1601 Vigna mungo HOM05D003558 ORTHO05D004392 5.0e-14 80.9 44 84.1
Aqoxy2G02732 Aquilegia oxysepala HOM05D003558 ORTHO05D004392 6.6e-14 80.5 44 86.4
MELO3C016262.2 Cucumis melo HOM05D003558 ORTHO05D004392 6.6e-14 80.5 44 88.6
CsaV3_4G006830 Cucumis sativus L. HOM05D003558 ORTHO05D004392 6.6e-14 80.5 44 88.6
Duzib128G1157 Durio zibethinus HOM05D003558 ORTHO05D004392 6.6e-14 80.5 44 84.1
Nn2g12717 Nelumbo nucifera HOM05D003558 ORTHO05D004392 6.6e-14 80.5 44 84.1
Os07g0435100 Oryza sativa ssp. japonica HOM05D003558 ORTHO05D004392 6.6e-14 80.5 45 82.2
Psat0s889g0080 Pisum sativum HOM05D003558 ORTHO05D004392 6.6e-14 80.5 44 86.4
Psat7g261400 Pisum sativum HOM05D003558 ORTHO05D004392 6.6e-14 80.5 44 86.4
Sed0010282 Sechium edule HOM05D003558 ORTHO05D004392 6.6e-14 80.5 44 84.1
Thecc.05G207600 Theobroma cacao HOM05D003558 ORTHO05D004392 6.6e-14 80.5 44 84.1
Lj3g0002122 Lotus japonicus HOM05D003558 ORTHO05D004392 8.6e-14 80.1 44 86.4
RcHm_v2.0_Chr7g0186141 Rosa chinensis HOM05D003558 ORTHO05D004392 8.6e-14 80.1 44 84.1
Hund11374 Selenicereus undatus HOM05D003558 ORTHO05D004392 8.6e-14 80.1 44 81.8
CiPaw.11G117400 Carya illinoinensis HOM05D003558 ORTHO05D004392 1.1e-13 79.7 44 84.1
CiPaw.12G080800 Carya illinoinensis HOM05D003558 ORTHO05D004392 1.1e-13 79.7 44 84.1
Ca_13177_v3 Cicer arietinum L. HOM05D003558 ORTHO05D004392 1.1e-13 79.7 44 81.8
Ca_18846_v3 Cicer arietinum L. HOM05D003558 ORTHO05D004392 1.1e-13 79.7 44 81.8
Eucgr.E00943 Eucalyptus grandis HOM05D003558 ORTHO05D004392 1.1e-13 79.7 42 85.7
PSO017G6909 Papaver somniferum HOM05D003558 ORTHO05D004392 1.1e-13 79.7 43 86.0
Sed0022053 Sechium edule HOM05D003558 ORTHO05D004392 1.1e-13 79.7 44 84.1
TAR425G0004 Trochodendron aralioides HOM05D003558 ORTHO05D004392 1.1e-13 79.7 44 84.1
COL.COLO4_08911 Corchorus olitorius HOM05D003558 ORTHO05D004392 1.5e-13 79.3 44 81.8
COL.COLO4_23475 Corchorus olitorius HOM05D003558 ORTHO05D004392 1.5e-13 79.3 44 81.8
COL.COLO4_35445 Corchorus olitorius HOM05D003558 ORTHO05D004392 1.5e-13 79.3 44 81.8
DCAR_006513 Daucus carota HOM05D003558 ORTHO05D004392 1.5e-13 79.3 44 81.8
Duzib106G0520 Durio zibethinus HOM05D003558 ORTHO05D004392 1.5e-13 79.3 44 81.8
Actinidia22742 Actinidia chinensis HOM05D003558 ORTHO05D004392 1.9e-13 79.0 43 86.0
ClCG07G011380 Citrullus lanatus HOM05D003558 ORTHO05D004392 1.9e-13 79.0 44 86.4
Lalb_Chr07g0188951 Lupinus albus HOM05D003558 ORTHO05D004392 1.9e-13 79.0 44 81.8
ATR0602G090 Amborella trichopoda HOM05D003558 ORTHO05D004392 2.5e-13 78.6 44 84.1
FvH4_5g11650 Fragaria vesca HOM05D003558 ORTHO05D004392 2.5e-13 78.6 44 81.8
FAN04G1402 Fragaria x ananassa HOM05D003558 ORTHO05D004392 2.5e-13 78.6 44 81.8
FAN08G1805 Fragaria x ananassa HOM05D003558 ORTHO05D004392 2.5e-13 78.6 44 81.8
FAN13G2808 Fragaria x ananassa HOM05D003558 ORTHO05D004392 2.5e-13 78.6 44 81.8
FAN18G4084 Fragaria x ananassa HOM05D003558 ORTHO05D004392 2.5e-13 78.6 44 81.8
FAN18G4304 Fragaria x ananassa HOM05D003558 ORTHO05D004392 2.5e-13 78.6 44 81.8
Gohir.1Z049372 Gossypium hirsutum HOM05D003558 ORTHO05D004392 2.5e-13 78.6 44 81.8
Gohir.A08G223500 Gossypium hirsutum HOM05D003558 ORTHO05D004392 2.5e-13 78.6 44 81.8
Gorai.004G260100 Gossypium raimondii HOM05D003558 ORTHO05D004392 2.5e-13 78.6 44 81.8
PGR042G0055 Punica granatum HOM05D003558 ORTHO05D004392 2.5e-13 78.6 44 81.8
EL10Ac5g12950 Beta vulgaris HOM05D003558 ORTHO05D004392 3.3e-13 78.2 44 79.5
Haze_09103 Corylus avellana HOM05D003558 ORTHO05D004392 3.3e-13 78.2 44 81.8
Migut.A00609 Erythranthe guttata HOM05D003558 ORTHO05D004392 3.3e-13 78.2 44 81.8
Mapoly0071s0017 Marchantia polymorpha HOM05D003558 ORTHO05D004392 3.3e-13 78.2 43 86.0
Zm00001eb413880 Zea mays HOM05D003558 ORTHO05D004392 3.3e-13 78.2 45 80.0
DCAR_026273 Daucus carota HOM05D003558 ORTHO05D004392 4.3e-13 77.8 44 81.8
AUR62007010 Chenopodium quinoa HOM05D003558 ORTHO05D004392 5.6e-13 77.4 44 79.5
AUR62019874 Chenopodium quinoa HOM05D003558 ORTHO05D004392 5.6e-13 77.4 44 79.5
SEGI_23551 Sequoiadendron giganteum HOM05D003558 ORTHO05D004392 5.6e-13 77.4 43 81.4
TWI81G0268 Tripterygium wilfordii HOM05D003558 ORTHO05D004392 5.6e-13 77.4 44 79.5
Cpa.g.sc79.5 Carica papaya HOM05D003558 ORTHO05D004392 7.3e-13 77.0 44 81.8
Oeu055020.1 Olea europaea HOM05D003558 ORTHO05D004392 7.3e-13 77.0 44 79.5
Eucgr.E00681 Eucalyptus grandis HOM05D003558 ORTHO05D004392 9.5e-13 76.6 44 81.8
Eucgr.E00914 Eucalyptus grandis HOM05D003558 ORTHO05D004392 9.5e-13 76.6 44 77.3
Oeu009980.1 Olea europaea HOM05D003558 ORTHO05D004392 9.5e-13 76.6 43 83.7
Pp3c17_21360 Physcomitrium patens HOM05D003558 ORTHO05D004392 9.5e-13 76.6 44 79.5
Cfa011973 Carpinus fangiana HOM05D003558 ORTHO05D004392 1.2e-12 76.3 44 79.5
Zm00001eb121180 Zea mays HOM05D003558 ORTHO05D004392 1.2e-12 76.3 43 81.4
AT5G42040 Arabidopsis thaliana HOM05D003558 ORTHO05D004392 1.6e-12 75.9 49 73.5
CARHR046430 Cardamine hirsuta HOM05D003558 ORTHO05D004392 2.1e-12 75.5 44 79.5
Nn1g00283 Nelumbo nucifera HOM05D003558 ORTHO05D004392 2.1e-12 75.5 44 79.5
Sp7g00080 Schrenkiella parvula HOM05D003558 ORTHO05D004392 2.1e-12 75.5 44 79.5
TWI60G0493 Tripterygium wilfordii HOM05D003558 ORTHO05D004392 2.8e-12 75.1 44 77.3
Ah.12g052830 Amaranthus hybridus HOM05D003558 ORTHO05D004392 3.6e-12 74.7 44 77.3
AL7G47120 Arabidopsis lyrata HOM05D003558 ORTHO05D004392 3.6e-12 74.7 44 79.5
Eucgr.E00961 Eucalyptus grandis HOM05D003558 ORTHO05D004392 3.6e-12 74.7 44 81.8
Manes.01G045195 Manihot esculenta HOM05D003558 ORTHO05D004392 3.6e-12 74.7 44 79.5
Manes.02G006900 Manihot esculenta HOM05D003558 ORTHO05D004392 3.6e-12 74.7 44 79.5
THA.LOC104817564 Tarenaya hassleriana HOM05D003558 ORTHO05D004392 4.7e-12 74.3 43 81.4
Atru.chr9.1940 Acer truncatum HOM05D003558 ORTHO05D004392 8.1e-12 73.6 44 79.5
Ciclev10021697m.g Citrus clementina HOM05D003558 ORTHO05D004392 8.1e-12 73.6 44 79.5
BcaB07g31471 Brassica carinata HOM05D003558 ORTHO05D004392 1.1e-11 73.2 44 77.3
BcaB07g31496 Brassica carinata HOM05D003558 ORTHO05D004392 1.1e-11 73.2 44 77.3
BcaC04g22576 Brassica carinata HOM05D003558 ORTHO05D004392 1.1e-11 73.2 44 77.3
BcaC04g22613 Brassica carinata HOM05D003558 ORTHO05D004392 1.1e-11 73.2 44 77.3
A09p14400 Brassica napus HOM05D003558 ORTHO05D004392 1.1e-11 73.2 44 77.3
A09p14640 Brassica napus HOM05D003558 ORTHO05D004392 1.1e-11 73.2 44 77.3
C09p17320 Brassica napus HOM05D003558 ORTHO05D004392 1.1e-11 73.2 44 77.3
C09p17720 Brassica napus HOM05D003558 ORTHO05D004392 1.1e-11 73.2 44 77.3
BolC9t54634H Brassica oleracea HOM05D003558 ORTHO05D004392 1.1e-11 73.2 44 77.3
BolC9t54666H Brassica oleracea HOM05D003558 ORTHO05D004392 1.1e-11 73.2 44 77.3
BraA09t37110Z Brassica rapa HOM05D003558 ORTHO05D004392 1.1e-11 73.2 44 77.3
Carub.0002s0023 Capsella rubella HOM05D003558 ORTHO05D004392 1.1e-11 73.2 44 77.3
Pp3c14_17630 Physcomitrium patens HOM05D003558 ORTHO05D004392 1.1e-11 73.2 44 77.3
Sp2g00230 Schrenkiella parvula HOM05D003558 ORTHO05D004392 1.1e-11 73.2 44 77.3
THA.LOC104809321 Tarenaya hassleriana HOM05D003558 ORTHO05D004392 1.1e-11 73.2 43 79.1
Peaxi162Scf00074g00546 Petunia axillaris HOM05D003558 ORTHO05D004392 1.4e-11 72.8 44 79.5
Potri.003G142700 Populus trichocarpa HOM05D003558 ORTHO05D004392 1.4e-11 72.8 44 77.3
Solyc08g082700.3 Solanum lycopersicum HOM05D003558 ORTHO05D004392 1.4e-11 72.8 44 79.5
Sopen08g030930 Solanum pennellii HOM05D003558 ORTHO05D004392 1.4e-11 72.8 44 79.5
PGSC0003DMG400012259 Solanum tuberosum HOM05D003558 ORTHO05D004392 1.4e-11 72.8 44 79.5
Aa31LG2G1510 Aethionema arabicum HOM05D003558 ORTHO05D004392 2.3e-11 72.0 44 75.0
BraA09t37087Z Brassica rapa HOM05D003558 ORTHO05D004392 2.3e-11 72.0 44 75.0
Thhalv10023640m.g Eutrema salsugineum HOM05D003558 ORTHO05D004392 2.3e-11 72.0 44 75.0
AL2G10280 Arabidopsis lyrata HOM05D003558 ORTHO05D004392 4.0e-11 71.2 44 75.0
AT1G64520 Arabidopsis thaliana HOM05D003558 ORTHO05D004392 4.0e-11 71.2 44 75.0
Nitab4.5_0000357g0410 Nicotiana tabacum HOM05D003558 ORTHO05D004392 4.0e-11 71.2 44 75.0
Nitab4.5_0002793g0010 Nicotiana tabacum HOM05D003558 ORTHO05D004392 4.0e-11 71.2 43 79.1
Nitab4.5_0003266g0030 Nicotiana tabacum HOM05D003558 ORTHO05D004392 4.0e-11 71.2 44 75.0
Potri.001G088200 Populus trichocarpa HOM05D003558 ORTHO05D004392 4.0e-11 71.2 44 75.0
CAN.G567.30 Capsicum annuum HOM05D003558 ORTHO05D004392 8.9e-11 70.1 44 77.3
Peaxi162Scf00117g00921 Petunia axillaris HOM05D003558 ORTHO05D004392 1.2e-10 69.7 44 75.0
Nitab4.5_0002367g0050 Nicotiana tabacum HOM05D003558 ORTHO05D004392 2.0e-10 68.9 44 75.0
Sabra01G0064500 Salix brachista HOM05D003558 ORTHO05D004392 2.0e-10 68.9 44 72.7
Sabra03G0103300 Salix brachista HOM05D003558 ORTHO05D004392 5.8e-10 67.4 44 70.5
Nitab4.5_0007285g0050 Nicotiana tabacum HOM05D003558 ORTHO05D004392 9.9e-10 66.6 44 75.0
AagrBONN_evm.TU.Sc2ySwM_228.783 Anthoceros agrestis HOM05D003558 ORTHO05D004392 1.3e-09 66.2 43 76.7
CBR_g36847 Chara braunii HOM05D003558 ORTHO05D004392 1.3e-09 66.2 42 73.8
Sc07g0010140 Simmondsia chinensis HOM05D003558 ORTHO05D004392 1.7e-09 65.9 37 83.8
CSS0010814 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 1.3e-06 56.2 44 65.9
SMO196G0279 Selaginella moellendorffii HOM05D003558 ORTHO05D004392 3.0e-06 55.1 43 60.5


User provided reference genes

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