Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004874 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 9.8e-119 430.3 233 100.0
CSS0023973 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 1.4e-104 383.3 242 88.4
vmacro10401 Vaccinium macrocarpon HOM05D005772 ORTHO05D006468 4.0e-72 275.4 241 62.7
CiPaw.02G128300 Carya illinoinensis HOM05D005772 ORTHO05D006468 5.4e-61 238.4 240 59.6
CiPaw.01G207400 Carya illinoinensis HOM05D005772 ORTHO05D006468 1.3e-59 233.8 246 57.3
TAR625G1307 Trochodendron aralioides HOM05D005772 ORTHO05D006468 3.0e-59 232.6 239 60.7
Nn8g41076 Nelumbo nucifera HOM05D005772 ORTHO05D006468 8.7e-59 231.1 240 52.5
TWI18G0423 Tripterygium wilfordii HOM05D005772 ORTHO05D006468 8.7e-59 231.1 243 58.4
Cfa003428 Carpinus fangiana HOM05D005772 ORTHO05D006468 1.9e-58 229.9 240 57.9
Potri.007G001400 Populus trichocarpa HOM05D005772 ORTHO05D006468 3.3e-58 229.2 244 52.5
QL06p046996 Quercus lobata HOM05D005772 ORTHO05D006468 9.6e-58 227.6 242 58.7
Prupe.3G025100 Prunus persica HOM05D005772 ORTHO05D006468 4.8e-57 225.3 246 52.4
GSVIVG01029533001 Vitis vinifera HOM05D005956 ORTHO05D007197 2.6e-55 219.5 237 57.8
Sabra07G0001200 Salix brachista HOM05D005772 ORTHO05D006468 4.5e-55 218.8 237 51.9
Aqoxy2G03016 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 6.4e-54 214.9 241 51.0
PSO170G5960 Papaver somniferum HOM05D005772 ORTHO05D006468 9.3e-53 211.1 237 50.2
MD04G1024200 Malus domestica HOM05D005772 ORTHO05D006468 4.6e-52 208.8 246 48.0
Rhsim08G0251400 Rhododendron simsii HOM05D000927 ORTHO05D000850 2.5e-50 203.0 146 67.8
FAN02G1413 Fragaria x ananassa HOM05D005772 ORTHO05D006468 4.8e-49 198.7 250 46.8
FAN09G4514 Fragaria x ananassa HOM05D005772 ORTHO05D006468 4.8e-49 198.7 249 47.4
RcHm_v2.0_Chr2g0149081 Rosa chinensis HOM05D005772 ORTHO05D006468 6.2e-49 198.4 247 48.6
FAN14G5951 Fragaria x ananassa HOM05D005772 ORTHO05D006468 5.3e-48 195.3 246 47.6
Thecc.06G054300 Theobroma cacao HOM05D005772 ORTHO05D006468 1.5e-47 193.7 137 68.6
Ciclev10013938m.g Citrus clementina HOM05D005772 ORTHO05D006468 1.0e-46 191.0 241 46.5
Ciclev10013939m.g Citrus clementina HOM05D005772 ORTHO05D006468 1.0e-46 191.0 241 46.5
MBI06_g27497_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 6.5e-46 188.3 241 48.1
PGR031G3661 Punica granatum HOM05D005772 ORTHO05D006468 6.5e-46 188.3 242 47.1
Lj3g0026748 Lotus japonicus HOM05D005772 ORTHO05D006468 2.5e-45 186.4 241 47.3
Ciclev10013941m.g Citrus clementina HOM05D005772 ORTHO05D006468 3.2e-45 186.0 164 59.1
Potri.007G001650 Populus trichocarpa HOM05D005772 ORTHO05D006468 5.5e-45 185.3 123 68.3
Oeu038376.1 Olea europaea HOM05D005772 ORTHO05D006468 1.2e-44 184.1 177 53.7
HPP92_009982 Vanilla planifolia HOM05D005772 ORTHO05D006468 2.1e-44 183.3 221 46.6
PSO063G1689 Papaver somniferum HOM05D005772 ORTHO05D006468 7.9e-44 181.4 162 58.0
Manes.14G007000 Manihot esculenta HOM05D005772 ORTHO05D006468 5.1e-43 178.7 230 44.8
CANSAT01G3073 Cannabis sativa HOM05D005772 ORTHO05D006468 4.3e-42 175.6 254 46.9
Dinv20324 Davidia involucrata HOM05D005772 ORTHO05D006468 7.9e-36 154.8 235 48.9
Haze_16205 Corylus avellana HOM05D005772 ORTHO05D006468 1.1e-32 144.4 191 47.1
Medtr0032s0080 Medicago truncatula HOM05D005772 ORTHO05D006468 2.4e-32 143.3 239 40.6
SHI31127 Sapria himalayana HOM05D005772 ORTHO05D006468 4.1e-32 142.5 278 36.0
AT1G78922 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 1.3e-30 137.5 146 49.3
FvH4_6g36610 Fragaria vesca HOM05D005772 ORTHO05D006468 1.1e-29 134.4 183 45.4
Aa31LG4G2060 Aethionema arabicum HOM05D005772 ORTHO05D006468 1.4e-29 134.0 236 37.7
THA.LOC104813627 Tarenaya hassleriana HOM05D005772 ORTHO05D006468 1.4e-29 134.0 273 36.6
Carub.0002s2577 Capsella rubella HOM05D005772 ORTHO05D006468 1.4e-27 127.5 125 52.0
CARHR072530 Cardamine hirsuta HOM05D005772 ORTHO05D006468 3.0e-27 126.3 167 43.7
Duzib192G0394 Durio zibethinus HOM05D005772 ORTHO05D006468 1.5e-26 124.0 129 52.7
BcaC08g45402 Brassica carinata HOM05D007236 ORTHO05D009150 9.7e-26 121.3 141 48.2
C06p30330 Brassica napus HOM05D005772 ORTHO05D006468 9.7e-26 121.3 141 48.2
BolC6t38196H Brassica oleracea HOM05D005772 ORTHO05D006468 9.7e-26 121.3 141 48.2
A07p27410 Brassica napus HOM05D005772 ORTHO05D006468 1.7e-25 120.6 226 35.8
BraA07t30382Z Brassica rapa HOM05D005772 ORTHO05D006468 8.2e-25 118.2 122 50.8
BcaB02g07187 Brassica carinata HOM05D005772 ORTHO05D006468 1.1e-24 117.9 225 36.0
Gohir.D05G239100 Gossypium hirsutum HOM05D005772 ORTHO05D006468 1.2e-23 114.4 150 39.3
Thecc.08G129200 Theobroma cacao HOM05D005772 ORTHO05D006468 1.2e-23 114.4 150 40.7
Migut.C01111 Erythranthe guttata HOM05D005772 ORTHO05D006468 5.9e-23 112.1 168 41.7
TAR628G1655 Trochodendron aralioides HOM05D005772 ORTHO05D006468 1.0e-22 111.3 167 40.1
Atru.chr1.2602 Acer truncatum HOM05D005772 ORTHO05D006468 1.3e-22 110.9 158 44.3
arahy.Tifrunner.gnm1.ann1.B1JKF4 Arachis hypogaea HOM05D005772 ORTHO05D006468 2.9e-22 109.8 184 39.1
Gorai.009G247900 Gossypium raimondii HOM05D005772 ORTHO05D006468 2.9e-22 109.8 124 41.1
Duzib093G1216 Durio zibethinus HOM05D005772 ORTHO05D006468 5.0e-22 109.0 131 42.0
Migut.E01717 Erythranthe guttata HOM05D005772 ORTHO05D006468 6.5e-22 108.6 168 41.1
Nn5g28367 Nelumbo nucifera HOM05D005772 ORTHO05D006468 1.4e-21 107.5 168 37.5
Actinidia15231 Actinidia chinensis HOM05D005772 ORTHO05D006468 1.9e-21 107.1 198 36.4
AL2G39360 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 1.9e-21 107.1 106 50.9
TPR.G38724 Trifolium pratense HOM05D003324 ORTHO05D006468 1.9e-21 107.1 211 42.2
Phvul.007G102200 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 2.5e-21 106.7 167 38.3
VMungo1309G2764 Vigna mungo HOM05D005772 ORTHO05D006468 3.2e-21 106.3 158 42.4
Gohir.A05G237000 Gossypium hirsutum HOM05D005772 ORTHO05D006468 5.5e-21 105.5 124 39.5
Manes.02G166200 Manihot esculenta HOM05D005772 ORTHO05D006468 5.5e-21 105.5 180 35.6
MBI06_g44579_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 7.2e-21 105.1 146 39.0
GSVIVG01008837001 Vitis vinifera HOM05D005772 ORTHO05D006468 9.4e-21 104.8 167 38.3
ClCG11G015880 Citrullus lanatus HOM05D005772 ORTHO05D006468 2.1e-20 103.6 158 39.2
Hma1.2p1_0612F.1_g188830 Hydrangea macrophylla HOM05D005772 ORTHO05D006468 2.1e-20 103.6 142 39.4
FvH4_4g20570 Fragaria vesca HOM05D005956 ORTHO05D006468 2.7e-20 103.2 160 41.2
Psat5g087080 Pisum sativum HOM05D005772 ORTHO05D006468 2.7e-20 103.2 185 38.9
MELO3C010502.2 Cucumis melo HOM05D005772 ORTHO05D006468 6.1e-20 102.1 200 35.0
Migut.E00857 Erythranthe guttata HOM05D005772 ORTHO05D006468 6.1e-20 102.1 182 39.0
Sp5g33960 Schrenkiella parvula HOM05D005772 ORTHO05D006468 8.0e-20 101.7 212 36.3
TPR.G21059 Trifolium pratense HOM05D005772 ORTHO05D006468 8.0e-20 101.7 194 35.1
Cpa.g.sc64.117 Carica papaya HOM05D005772 ORTHO05D006468 3.9e-19 99.4 185 36.2
CsaV3_4G028090 Cucumis sativus L. HOM05D005772 ORTHO05D006468 3.9e-19 99.4 200 34.0
arahy.Tifrunner.gnm1.ann1.AWF3QX Arachis hypogaea HOM05D005772 ORTHO05D006468 5.2e-19 99.0 239 32.6
Eucgr.A00749 Eucalyptus grandis HOM05D005772 ORTHO05D006468 1.1e-18 97.8 98 54.1
QL09p033796 Quercus lobata HOM05D005772 ORTHO05D006468 1.1e-18 97.8 172 37.2
Cc10_g12210 Coffea canephora HOM05D005772 ORTHO05D006468 1.5e-18 97.4 119 42.9
Nitab4.5_0000111g0180 Nicotiana tabacum HOM05D005772 ORTHO05D006468 2.0e-18 97.1 169 38.5
Phvul.009G125600 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 2.6e-18 96.7 180 37.2
SGA_v2.0_scaffold52G18944 Striga asiatica HOM05D005772 ORTHO05D006468 2.6e-18 96.7 155 35.5
Actinidia21305 Actinidia chinensis HOM05D005772 ORTHO05D006468 3.3e-18 96.3 163 36.8
Ciclev10003748m.g Citrus clementina HOM05D005772 ORTHO05D006468 4.4e-18 95.9 187 36.4
DCAR_003562 Daucus carota HOM05D005772 ORTHO05D006468 7.4e-18 95.1 123 41.5
QL06p047014 Quercus lobata HOM05D001071 ORTHO05D006468 1.7e-17 94.0 143 49.0
Glyma.06G113802 Glycine max HOM05D005772 ORTHO05D006468 2.8e-17 93.2 117 41.0
Potri.005G180400 Populus trichocarpa HOM05D005772 ORTHO05D006468 2.8e-17 93.2 177 34.5
Aqoxy6G00258 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 3.7e-17 92.8 138 39.1
CiPaw.16G025800 Carya illinoinensis HOM05D005772 ORTHO05D006468 3.7e-17 92.8 182 34.6
Glyma.04G249200 Glycine max HOM05D005772 ORTHO05D006468 3.7e-17 92.8 183 35.5
CANSAT64G1440 Cannabis sativa HOM05D005772 ORTHO05D006468 4.8e-17 92.4 174 35.1
Lalb_Chr08g0241421 Lupinus albus HOM05D005772 ORTHO05D006468 6.3e-17 92.0 167 35.3
PGR042G3290 Punica granatum HOM05D005772 ORTHO05D006468 4.1e-16 89.4 172 31.4
Lj4A634T17 Lonicera japonica HOM05D005772 ORTHO05D006468 9.1e-16 88.2 151 41.1
Lj1g0001548 Lotus japonicus HOM05D005772 ORTHO05D006468 1.6e-15 87.4 118 39.0
CSS0028957 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 1.0e-14 84.7 131 38.9
MD04G1024400 Malus domestica HOM05D005772 ORTHO05D006468 1.3e-14 84.3 85 54.1
THA.LOC104800210 Tarenaya hassleriana HOM05D005772 ORTHO05D006468 1.7e-14 84.0 222 32.0
SGA_v2.0_scaffold52G18951 Striga asiatica HOM05D005772 ORTHO05D006468 3.2e-13 79.7 125 36.8
A07p14940 Brassica napus HOM05D005772 ORTHO05D006468 4.2e-13 79.3 160 32.5
Zm00001eb215960 Zea mays HOM05D046982 ORTHO05D006468 7.2e-13 78.6 198 31.8
CARHR022100 Cardamine hirsuta HOM05D005772 ORTHO05D006468 9.4e-13 78.2 118 33.1
MSTRG.1426 Avicennia marina HOM05D005772 ORTHO05D006468 1.6e-12 77.4 119 38.7
Dinv27285 Davidia involucrata HOM05D005772 ORTHO05D006468 2.7e-12 76.6 179 28.5
AL1G34900 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 4.7e-12 75.9 118 33.1
Carub.0001s2117 Capsella rubella HOM05D005772 ORTHO05D006468 2.3e-11 73.6 119 31.1
Thhalv10008678m.g Eutrema salsugineum HOM05D005772 ORTHO05D006468 6.7e-11 72.0 131 30.5
SGA_v2.0_scaffold24G10436 Striga asiatica HOM05D002121 ORTHO05D004000 1.2e-10 71.2 119 35.3
Oeu009481.1 Olea europaea HOM05D005772 ORTHO05D006468 3.3e-10 69.7 82 42.7
AT1G21722 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 5.7e-10 68.9 118 31.4
A06p17810 Brassica napus HOM05D005772 ORTHO05D006468 2.8e-09 66.6 103 31.1
Rhsim06G0101700 Rhododendron simsii HOM05D005772 ORTHO05D006468 1.1e-08 64.7 80 43.8
BcaC05g26092 Brassica carinata HOM05D005772 ORTHO05D006468 1.8e-08 63.9 153 28.1
Atru.chr13.1514 Acer truncatum HOM05D005772 ORTHO05D006468 4.1e-08 62.8 106 41.5
SalBow8G0153 Salvia bowleyana HOM05D005772 ORTHO05D006468 7.0e-08 62.0 140 31.4
ATR0709G081 Amborella trichopoda HOM05D005772 ORTHO05D006468 1.6e-07 60.8 79 43.0
SGA_v2.0_scaffold2751G54198 Striga asiatica HOM05D005772 ORTHO05D006468 7.7e-07 58.5 88 38.6
ATR0618G111 Amborella trichopoda HOM05D005772 ORTHO05D006468 2.2e-06 57.0 196 30.1
SalBow5G0344 Salvia bowleyana HOM05D005772 ORTHO05D006468 2.2e-06 57.0 65 36.9
SalBow5G3743 Salvia bowleyana HOM05D005772 ORTHO05D006468 3.8e-06 56.2 85 34.1


User provided reference genes

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