Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004865 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 1.0e-305 1052.7 596 100.0
CSS0043740 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 8.7e-305 1049.7 596 99.3
Dinv36981 Davidia involucrata HOM05D005322 ORTHO05D006746 7.7e-128 461.8 587 50.8
Hma1.2p1_0080F.1_g042150 Hydrangea macrophylla HOM05D005322 ORTHO05D006746 2.3e-116 423.7 591 48.1
CSS0048225 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 5.2e-116 422.5 605 47.3
Rhsim07G0215300 Rhododendron simsii HOM05D005322 ORTHO05D006746 2.9e-106 390.2 690 44.6
Actinidia11927 Actinidia chinensis HOM05D005322 ORTHO05D006746 6.4e-98 362.5 612 42.2
vmacro11204 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 2.7e-96 357.1 461 49.9
Actinidia36382 Actinidia chinensis HOM05D005322 ORTHO05D006746 3.6e-93 346.7 455 48.4
TAR381G1522 Trochodendron aralioides HOM05D005322 ORTHO05D006746 3.4e-83 313.5 303 57.4
Cfa006826 Carpinus fangiana HOM05D005322 ORTHO05D006746 1.2e-80 305.1 627 38.8
CiPaw.07G042000 Carya illinoinensis HOM05D005322 ORTHO05D006746 1.9e-78 297.7 639 38.5
Lj5A206G51 Lonicera japonica HOM05D005322 ORTHO05D006746 2.5e-78 297.4 586 39.8
QL06p037497 Quercus lobata HOM05D005322 ORTHO05D006746 5.6e-78 296.2 628 38.9
Haze_03937 Corylus avellana HOM05D005322 ORTHO05D006746 4.5e-75 286.6 629 38.5
Atru.chr3.1145 Acer truncatum HOM05D005322 ORTHO05D006746 5.8e-75 286.2 312 53.5
Prupe.6G210300 Prunus persica HOM05D005322 ORTHO05D006746 5.8e-75 286.2 619 37.5
Atru.chr3.1164 Acer truncatum HOM05D005322 ORTHO05D006746 7.6e-75 285.8 305 54.1
HanXRQChr12g0355811 Helianthus annuus HOM05D005322 ORTHO05D006746 2.9e-74 283.9 482 38.0
Ciclev10026033m.g Citrus clementina HOM05D005322 ORTHO05D006746 1.4e-73 281.6 302 55.6
Oeu030825.1 Olea europaea HOM05D005322 ORTHO05D006746 3.2e-73 280.4 604 37.1
Oeu050977.1 Olea europaea HOM05D005322 ORTHO05D006746 1.2e-72 278.5 638 36.8
Nn4g23001 Nelumbo nucifera HOM05D005322 ORTHO05D006746 1.6e-72 278.1 303 52.5
TWI74G0553 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 6.0e-72 276.2 301 52.2
Duzib264G0018 Durio zibethinus HOM05D005322 ORTHO05D006746 7.9e-72 275.8 310 51.9
Nn5g29007 Nelumbo nucifera HOM05D005322 ORTHO05D006746 3.9e-71 273.5 646 35.9
ECA232G1574 Erigeron canadensis HOM05D005322 ORTHO05D006746 5.1e-71 273.1 296 51.7
CAN.G179.11 Capsicum annuum HOM05D005322 ORTHO05D006746 6.7e-71 272.7 278 52.2
RcHm_v2.0_Chr2g0109931 Rosa chinensis HOM05D005322 ORTHO05D006746 8.7e-71 272.3 630 36.3
Thecc.01G083200 Theobroma cacao HOM05D005322 ORTHO05D006746 1.1e-70 271.9 312 52.2
Potri.018G000700 Populus trichocarpa HOM05D005322 ORTHO05D006746 2.5e-70 270.8 286 56.6
Gorai.003G035800 Gossypium raimondii HOM05D005322 ORTHO05D006746 5.6e-70 269.6 329 49.8
TWI77G0556 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 1.3e-69 268.5 302 52.3
Manes.13G104500 Manihot esculenta HOM05D005322 ORTHO05D006746 8.1e-69 265.8 286 52.4
Sopen01g030500 Solanum pennellii HOM05D005322 ORTHO05D006746 1.1e-68 265.4 297 51.9
Gohir.D03G034100 Gossypium hirsutum HOM05D005322 ORTHO05D006746 2.4e-68 264.2 301 52.2
Gorai.007G058000 Gossypium raimondii HOM05D005322 ORTHO05D006746 2.4e-68 264.2 306 51.6
Gohir.A11G049800 Gossypium hirsutum HOM05D005322 ORTHO05D006746 4.0e-68 263.5 306 51.3
Manes.12G121000 Manihot esculenta HOM05D005322 ORTHO05D006746 6.9e-68 262.7 286 53.5
Solyc01g068540.3 Solanum lycopersicum HOM05D005322 ORTHO05D006746 1.5e-67 261.5 297 51.2
ECA238G0277 Erigeron canadensis HOM05D000009 ORTHO05D000008 2.0e-67 261.2 291 49.1
Potri.006G280800 Populus trichocarpa HOM05D005322 ORTHO05D006746 2.0e-67 261.2 286 53.5
FAN28G0408 Fragaria x ananassa HOM05D005322 ORTHO05D006746 3.4e-67 260.4 294 50.0
Gohir.D11G053300 Gossypium hirsutum HOM05D005322 ORTHO05D006746 7.6e-67 259.2 306 51.0
MD15G1306300 Malus domestica HOM05D005322 ORTHO05D006746 7.6e-67 259.2 618 37.4
ECA238G4016 Erigeron canadensis HOM05D005322 ORTHO05D006746 1.0e-66 258.8 291 48.5
FAN19G2338 Fragaria x ananassa HOM05D005322 ORTHO05D006746 1.3e-66 258.5 603 36.3
MELO3C007693.2 Cucumis melo HOM05D005322 ORTHO05D006746 2.9e-66 257.3 325 48.3
Nitab4.5_0002103g0070 Nicotiana tabacum HOM05D005322 ORTHO05D006746 2.9e-66 257.3 303 49.5
Duzib147G0396 Durio zibethinus HOM05D005322 ORTHO05D006746 4.9e-66 256.5 301 52.2
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 6.5e-66 256.1 311 50.2
MD01G1045600 Malus domestica HOM05D005322 ORTHO05D006746 8.4e-66 255.8 615 36.7
FvH4_1g18920 Fragaria vesca HOM05D005322 ORTHO05D006746 1.1e-65 255.4 603 36.3
Cc07_g07800 Coffea canephora HOM05D005322 ORTHO05D006746 4.2e-65 253.4 263 54.4
CsaV3_6G044720 Cucumis sativus L. HOM05D005322 ORTHO05D006746 7.1e-65 252.7 322 48.8
FAN23G1375 Fragaria x ananassa HOM05D005322 ORTHO05D006746 9.3e-65 252.3 294 49.7
MBI16_g26241_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 1.6e-64 251.5 304 50.0
ClCG01G018150 Citrullus lanatus HOM05D005322 ORTHO05D006746 7.9e-64 249.2 595 35.5
Lj2g0022469 Lotus japonicus HOM05D005322 ORTHO05D006746 3.9e-63 246.9 310 47.4
Lalb_Chr05g0216181 Lupinus albus HOM05D005322 ORTHO05D006746 6.7e-63 246.1 303 50.2
Peaxi162Scf00309g00413 Petunia axillaris HOM05D005322 ORTHO05D006746 1.1e-62 245.4 257 53.3
Hund25262 Selenicereus undatus HOM05D005322 ORTHO05D006746 1.1e-62 245.4 299 47.8
Lsat_1_v5_gn_2_82180 Lactuca sativa HOM05D005322 ORTHO05D006746 1.5e-62 245.0 601 36.1
Cpa.g.sc129.20 Carica papaya HOM05D005322 ORTHO05D006746 2.8e-61 240.7 641 38.8
CANSAT11G0958 Cannabis sativa HOM05D005322 ORTHO05D006746 4.8e-61 240.0 297 47.1
Aqoxy5G02272 Aquilegia oxysepala HOM05D005322 ORTHO05D006746 8.2e-61 239.2 286 49.0
AUR62044121 Chenopodium quinoa HOM05D005322 ORTHO05D006746 1.4e-60 238.4 283 48.8
Sed0015871 Sechium edule HOM05D005322 ORTHO05D006746 1.4e-60 238.4 322 47.8
AUR62002656 Chenopodium quinoa HOM05D005322 ORTHO05D006746 1.8e-60 238.0 299 48.5
Gohir.A02G146400 Gossypium hirsutum HOM05D005322 ORTHO05D006746 3.1e-60 237.3 277 51.3
PSO761G0065 Papaver somniferum HOM05D005322 ORTHO05D006746 3.1e-60 237.3 289 49.5
Ca_25206_v3 Cicer arietinum L. HOM05D005322 ORTHO05D006746 4.1e-60 236.9 276 49.6
PSO210G4083 Papaver somniferum HOM05D005322 ORTHO05D006746 5.3e-60 236.5 289 49.5
MSTRG.8297 Avicennia marina HOM05D005322 ORTHO05D006746 3.4e-59 233.8 635 35.0
Sc22g0002020 Simmondsia chinensis HOM05D005322 ORTHO05D006746 4.5e-59 233.4 299 50.5
EL10Ac6g13300 Beta vulgaris HOM05D005322 ORTHO05D006746 3.8e-58 230.3 452 38.5
Glyma.01G019600 Glycine max HOM05D005322 ORTHO05D006746 5.0e-58 229.9 286 46.9
Medtr7g076850 Medicago truncatula HOM05D005322 ORTHO05D006746 3.2e-57 227.3 319 45.5
Phvul.002G142700 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 4.2e-57 226.9 305 46.6
Ah.02g129230 Amaranthus hybridus HOM05D005322 ORTHO05D006746 5.5e-57 226.5 314 45.5
Psat2g134960 Pisum sativum HOM05D005322 ORTHO05D006746 2.7e-56 224.2 304 44.7
arahy.Tifrunner.gnm1.ann1.072AWD Arachis hypogaea HOM05D005322 ORTHO05D006746 3.5e-56 223.8 298 45.3
arahy.Tifrunner.gnm1.ann1.BDDW1F Arachis hypogaea HOM05D005322 ORTHO05D006746 3.5e-56 223.8 298 45.3
THA.LOC104807095 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 6.7e-55 219.5 304 46.7
Psat5g132240 Pisum sativum HOM05D005322 ORTHO05D006746 1.5e-54 218.4 269 49.1
Aa31LG6G14810 Aethionema arabicum HOM05D005322 ORTHO05D006746 2.5e-54 217.6 302 47.0
Phvul.010G030900 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 2.5e-54 217.6 286 47.9
Rhsim10G0081400 Rhododendron simsii HOM05D005322 ORTHO05D006746 2.5e-54 217.6 500 37.2
Migut.F01569 Erythranthe guttata HOM05D005322 ORTHO05D006746 5.7e-54 216.5 624 33.8
TPR.G30490 Trifolium pratense HOM05D005322 ORTHO05D006746 9.7e-54 215.7 276 47.8
SGA_v2.0_scaffold76G25043 Striga asiatica HOM05D005322 ORTHO05D006746 2.8e-53 214.2 590 33.4
Glyma.09G203100 Glycine max HOM05D005322 ORTHO05D006746 3.7e-53 213.8 259 48.6
PGR031G1473 Punica granatum HOM05D005322 ORTHO05D006746 3.1e-52 210.7 311 46.3
vmacro05480 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 5.3e-52 209.9 358 42.7
THA.LOC104807657 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 2.6e-51 207.6 309 46.0
Medtr5g030750 Medicago truncatula HOM05D005322 ORTHO05D006746 4.5e-51 206.8 271 46.5
Nitab4.5_0001888g0010 Nicotiana tabacum HOM05D005322 ORTHO05D006746 6.5e-50 203.0 256 46.9
CARHR163340 Cardamine hirsuta HOM05D005322 ORTHO05D006746 1.0e-47 195.7 272 48.9
PGSC0003DMG400000839 Solanum tuberosum HOM05D000365 ORTHO05D000154 1.8e-47 194.9 227 50.7
Thhalv10010289m.g Eutrema salsugineum HOM05D005322 ORTHO05D006746 1.1e-46 192.2 298 44.3
AL5G34360 Arabidopsis lyrata HOM05D005322 ORTHO05D006746 5.7e-46 189.9 268 48.1
Carub.0005s2001 Capsella rubella HOM05D005322 ORTHO05D006746 9.7e-46 189.1 266 48.1
AT3G53440 Arabidopsis thaliana HOM05D005322 ORTHO05D006746 1.1e-44 185.7 266 47.0
SalBow6G3962 Salvia bowleyana HOM05D005322 ORTHO05D006746 6.9e-44 183.0 267 45.3
Sp5g08900 Schrenkiella parvula HOM05D005322 ORTHO05D006746 9.1e-44 182.6 285 43.9
GSVIVG01008306001 Vitis vinifera HOM05D005322 ORTHO05D006746 5.9e-43 179.9 499 34.5
Nitab4.5_0008618g0020 Nicotiana tabacum HOM05D005322 ORTHO05D006746 1.2e-40 172.2 202 50.5
C08p28800 Brassica napus HOM05D005322 ORTHO05D006746 2.7e-40 171.0 296 42.9
BcaB01g00278 Brassica carinata HOM05D005322 ORTHO05D006746 7.9e-40 169.5 264 44.7
A09p46440 Brassica napus HOM05D005322 ORTHO05D006746 7.9e-40 169.5 282 42.2
BolC8t50481H Brassica oleracea HOM05D005322 ORTHO05D006746 7.9e-40 169.5 264 44.7
BraA09t40109Z Brassica rapa HOM05D005322 ORTHO05D006746 7.9e-40 169.5 282 42.2
BcaB01g00273 Brassica carinata HOM05D005322 ORTHO05D006746 6.7e-39 166.4 305 39.3
DCAR_025854 Daucus carota HOM05D005322 ORTHO05D006746 6.7e-39 166.4 238 47.1
Zm00001eb297530 Zea mays HOM05D005322 ORTHO05D006746 5.7e-38 163.3 285 40.7
HPP92_000395 Vanilla planifolia HOM05D005322 ORTHO05D006746 7.4e-38 162.9 274 44.2
CDE01G0382 Ceratophyllum demersum HOM05D005322 ORTHO05D006746 2.2e-34 151.4 280 36.4
Zm00001eb345110 Zea mays HOM05D005322 ORTHO05D006746 8.5e-34 149.4 260 42.3
SHI12143 Sapria himalayana HOM05D005322 ORTHO05D006746 1.1e-28 132.5 231 40.3
SEGI_16708 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 1.0e-26 125.9 288 34.0
unitig_62.g23938 Utricularia gibba HOM05D005322 ORTHO05D006746 1.9e-25 121.7 268 35.1
VMungo0464G0122 Vigna mungo HOM05D000074 ORTHO05D006746 1.2e-24 119.0 228 39.5
ATR0807G165 Amborella trichopoda HOM05D005322 ORTHO05D006746 1.7e-21 108.6 131 46.6
SEGI_41064 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 3.7e-21 107.5 254 33.9
Actinidia36381 Actinidia chinensis HOM05D005322 ORTHO05D006746 2.9e-18 97.8 83 67.5
AagrBONN_evm.TU.Sc2ySwM_368.532 Anthoceros agrestis HOM05D005322 ORTHO05D006746 2.5e-17 94.7 277 28.2
Mapoly0062s0031 Marchantia polymorpha HOM05D005322 ORTHO05D006746 6.8e-15 86.7 265 30.2
Zm00001eb345140 Zea mays HOM05D005322 ORTHO05D006746 4.4e-14 84.0 251 29.5
DCAR_025850 Daucus carota HOM05D005322 ORTHO05D006746 1.1e-12 79.3 68 57.4
TAR625G0743 Trochodendron aralioides HOM05D005322 ORTHO05D006746 7.0e-12 76.6 94 52.1
MBI16_g31813_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 4.3e-09 67.4 167 33.5
Sabra18G0005500 Salix brachista HOM05D005322 ORTHO05D006746 1.6e-08 65.5 46 67.4
VMungo1215G2194 Vigna mungo HOM05D005322 ORTHO05D006746 2.3e-07 61.6 47 63.8
Cre14.g624600 Chlamydomonas reinhardtii HOM05D005322 ORTHO05D006746 4.4e-06 57.4 68 38.2


User provided reference genes

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