Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004856 Camellia sinensis var. sinensis HOM05D006031 ORTHO05D007417 1.3e-120 436.4 215 100.0
Actinidia20400 Actinidia chinensis HOM05D006031 ORTHO05D007417 6.5e-93 344.4 209 80.4
Ca_25548_v3 Cicer arietinum L. HOM05D006031 ORTHO05D007417 8.5e-93 344.0 215 77.7
CiPaw.03G228000 Carya illinoinensis HOM05D006031 ORTHO05D007417 1.4e-92 343.2 213 77.5
Dinv41637 Davidia involucrata HOM05D006031 ORTHO05D007417 1.9e-92 342.8 208 79.3
QL02p044744 Quercus lobata HOM05D006031 ORTHO05D007417 2.5e-92 342.4 213 77.9
Hma1.2p1_0945F.1_g240050 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 4.2e-92 341.7 214 79.4
Manes.03G024000 Manihot esculenta HOM05D006031 ORTHO05D007417 7.2e-92 340.9 215 78.6
Medtr1g035260 Medicago truncatula HOM05D006031 ORTHO05D007417 2.7e-91 339.0 215 75.8
TPR.G34905 Trifolium pratense HOM05D006031 ORTHO05D007417 4.7e-91 338.2 212 76.4
GSVIVG01015348001 Vitis vinifera HOM05D006031 ORTHO05D007417 6.1e-91 337.8 208 79.3
Thecc.09G105700 Theobroma cacao HOM05D006031 ORTHO05D007417 1.0e-90 337.0 212 76.9
CANSAT56G1289 Cannabis sativa HOM05D006031 ORTHO05D007417 5.1e-90 334.7 207 78.3
PGR102G2811 Punica granatum HOM05D006031 ORTHO05D007417 6.7e-90 334.3 210 77.1
Atru.chr7.1388 Acer truncatum HOM05D006031 ORTHO05D007417 8.8e-90 334.0 215 76.3
MBI04_g14932_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 8.8e-90 334.0 206 76.2
AUR62021455 Chenopodium quinoa HOM05D006031 ORTHO05D007417 2.0e-89 332.8 213 77.9
MD02G1057400 Malus domestica HOM05D006031 ORTHO05D007417 2.6e-89 332.4 209 76.1
Gorai.010G073700 Gossypium raimondii HOM05D006031 ORTHO05D007417 3.3e-89 332.0 212 76.9
CAN.G478.5 Capsicum annuum HOM05D006031 ORTHO05D007417 5.7e-89 331.3 215 75.8
Cc06_g10050 Coffea canephora HOM05D006031 ORTHO05D007417 9.7e-89 330.5 210 76.7
COL.COLO4_34809 Corchorus olitorius HOM05D006031 ORTHO05D007417 1.3e-88 330.1 208 77.4
Hund26230 Selenicereus undatus HOM05D006031 ORTHO05D007417 1.3e-88 330.1 213 76.1
Gohir.A06G064600 Gossypium hirsutum HOM05D006031 ORTHO05D007417 1.7e-88 329.7 212 76.4
Sopen12g002000 Solanum pennellii HOM05D006031 ORTHO05D007417 1.7e-88 329.7 215 75.8
Sabra18G0072100 Salix brachista HOM05D006031 ORTHO05D007417 2.2e-88 329.3 211 74.4
Solyc12g006030.2 Solanum lycopersicum HOM05D006031 ORTHO05D007417 2.2e-88 329.3 215 75.8
RcHm_v2.0_Chr2g0091271 Rosa chinensis HOM05D006031 ORTHO05D007417 3.7e-88 328.6 211 73.9
Gohir.D06G063200 Gossypium hirsutum HOM05D006031 ORTHO05D007417 6.3e-88 327.8 212 75.9
TAR624G0502 Trochodendron aralioides HOM05D006031 ORTHO05D007417 6.3e-88 327.8 206 77.2
TWI63G0954 Tripterygium wilfordii HOM05D006031 ORTHO05D007417 8.2e-88 327.4 212 75.5
Nn2g11655 Nelumbo nucifera HOM05D006031 ORTHO05D007417 1.1e-87 327.0 206 77.2
Aqoxy7G01527 Aquilegia oxysepala HOM05D006031 ORTHO05D007417 1.4e-87 326.6 210 73.3
Eucgr.C03802 Eucalyptus grandis HOM05D006031 ORTHO05D007417 2.4e-87 325.9 207 77.3
PSO566G0179 Papaver somniferum HOM05D006031 ORTHO05D007417 2.4e-87 325.9 210 75.7
PSO782G0755 Papaver somniferum HOM05D006031 ORTHO05D007417 2.4e-87 325.9 212 75.0
Migut.K00493 Erythranthe guttata HOM05D006031 ORTHO05D007417 3.1e-87 325.5 212 75.5
FAN23G2797 Fragaria x ananassa HOM05D006031 ORTHO05D007417 5.3e-87 324.7 211 73.0
Phvul.004G168000 Phaseolus vulgaris HOM05D006031 ORTHO05D007417 5.3e-87 324.7 210 73.8
Nitab4.5_0000952g0030 Nicotiana tabacum HOM05D006031 ORTHO05D007417 7.0e-87 324.3 215 73.5
VMungo0464G0135 Vigna mungo HOM05D006031 ORTHO05D007417 7.0e-87 324.3 214 73.4
Ciclev10009448m.g Citrus clementina HOM05D006031 ORTHO05D007417 9.1e-87 323.9 218 74.3
Sc18g0001360 Simmondsia chinensis HOM05D006031 ORTHO05D007417 9.1e-87 323.9 206 76.2
Lsat_1_v5_gn_4_6541 Lactuca sativa HOM05D006031 ORTHO05D007417 1.2e-86 323.6 210 74.3
Lalb_Chr22g0352651 Lupinus albus HOM05D006031 ORTHO05D007417 1.2e-86 323.6 210 72.9
Glyma.01G145300 Glycine max HOM05D006031 ORTHO05D007417 2.6e-86 322.4 206 75.7
arahy.Tifrunner.gnm1.ann1.4UU729 Arachis hypogaea HOM05D006031 ORTHO05D007417 3.5e-86 322.0 210 73.8
arahy.Tifrunner.gnm1.ann1.P4D2XC Arachis hypogaea HOM05D006031 ORTHO05D007417 3.5e-86 322.0 210 73.8
FvH4_1g05640 Fragaria vesca HOM05D006031 ORTHO05D007417 3.5e-86 322.0 211 72.5
FAN26G3395 Fragaria x ananassa HOM05D006031 ORTHO05D007417 3.5e-86 322.0 211 72.5
Nitab4.5_0000010g0020 Nicotiana tabacum HOM05D006031 ORTHO05D007417 3.5e-86 322.0 215 73.0
EL10Ac8g18430 Beta vulgaris HOM05D006031 ORTHO05D007417 4.5e-86 321.6 213 74.6
Potri.018G083800 Populus trichocarpa HOM05D006031 ORTHO05D007417 4.5e-86 321.6 211 73.0
FAN26G0948 Fragaria x ananassa HOM05D006031 ORTHO05D007417 5.9e-86 321.2 211 72.5
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 2.2e-85 319.3 206 74.3
Peaxi162Scf00539g00717 Petunia axillaris HOM05D006031 ORTHO05D007417 3.8e-85 318.5 210 74.8
HanXRQChr17g0570151 Helianthus annuus HOM05D006031 ORTHO05D007417 6.5e-85 317.8 210 71.9
Actinidia09434 Actinidia chinensis HOM05D006031 ORTHO05D007417 1.1e-84 317.0 214 75.7
AUR62010942 Chenopodium quinoa HOM05D006031 ORTHO05D007417 1.1e-84 317.0 213 75.6
MELO3C004569.2 Cucumis melo HOM05D006031 ORTHO05D007417 2.5e-84 315.8 207 74.4
Cpa.g.sc12.30 Carica papaya HOM05D006031 ORTHO05D007417 1.6e-83 313.2 208 71.2
vmacro10877 Vaccinium macrocarpon HOM05D006031 ORTHO05D007417 1.6e-83 313.2 213 75.1
CsaV3_2G002120 Cucumis sativus L. HOM05D006031 ORTHO05D007417 3.6e-83 312.0 207 73.4
SalBow3G0984 Salvia bowleyana HOM05D006031 ORTHO05D007417 1.4e-82 310.1 217 70.5
A03p58440 Brassica napus HOM05D006031 ORTHO05D007417 1.5e-81 306.6 208 70.7
BraA03t14904Z Brassica rapa HOM05D006031 ORTHO05D007417 2.0e-81 306.2 208 70.7
A01p09080 Brassica napus HOM05D006031 ORTHO05D007417 2.6e-81 305.8 208 71.2
C07p56460 Brassica napus HOM05D006031 ORTHO05D007417 3.3e-81 305.4 208 70.2
BolC7t46125H Brassica oleracea HOM05D006031 ORTHO05D007417 3.3e-81 305.4 208 70.2
THA.LOC104804018 Tarenaya hassleriana HOM05D006031 ORTHO05D007417 3.3e-81 305.4 206 71.4
BcaC09g51657 Brassica carinata HOM05D006031 ORTHO05D007417 4.4e-81 305.1 208 70.2
BolC1t01025H Brassica oleracea HOM05D006031 ORTHO05D007417 4.4e-81 305.1 208 70.2
C01p10630 Brassica napus HOM05D006031 ORTHO05D007417 5.7e-81 304.7 208 70.2
BraA01t00856Z Brassica rapa HOM05D006031 ORTHO05D007417 5.7e-81 304.7 208 70.7
Carub.0007s1181 Capsella rubella HOM05D006031 ORTHO05D007417 5.7e-81 304.7 208 70.2
ClCG11G002340 Citrullus lanatus HOM05D006031 ORTHO05D007417 5.7e-81 304.7 234 65.4
Thhalv10026253m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 1.3e-80 303.5 207 71.0
BcaNung01361 Brassica carinata HOM05D006031 ORTHO05D007417 1.7e-80 303.1 208 69.7
Sp7g26830 Schrenkiella parvula HOM05D006031 ORTHO05D007417 2.8e-80 302.4 208 70.2
AL7G23660 Arabidopsis lyrata HOM05D006031 ORTHO05D007417 6.3e-80 301.2 208 69.7
BcaC06g32602 Brassica carinata HOM05D006031 ORTHO05D007417 6.3e-80 301.2 207 69.1
Aa31LG2G21560 Aethionema arabicum HOM05D006031 ORTHO05D007417 8.2e-80 300.8 207 68.1
AT4G28830 Arabidopsis thaliana HOM05D006031 ORTHO05D007417 8.2e-80 300.8 208 68.8
Ah.09g230920 Amaranthus hybridus HOM05D006031 ORTHO05D007417 4.1e-79 298.5 187 77.5
CDE02G2180 Ceratophyllum demersum HOM05D006031 ORTHO05D007417 4.1e-79 298.5 216 68.5
HPP92_005270 Vanilla planifolia HOM05D006031 ORTHO05D007417 4.5e-78 295.0 211 67.8
ATR0315G117 Amborella trichopoda HOM05D006031 ORTHO05D007417 2.9e-77 292.4 206 68.9
Cfa003225 Carpinus fangiana HOM05D006031 ORTHO05D007417 1.1e-76 290.4 212 69.8
Zm00001eb271370 Zea mays HOM05D006031 ORTHO05D007417 1.5e-76 290.0 206 68.0
Duzib150G0325 Durio zibethinus HOM05D006031 ORTHO05D007417 3.2e-76 288.9 212 68.9
Os06g0162600 Oryza sativa ssp. japonica HOM05D006031 ORTHO05D007417 4.2e-76 288.5 207 65.7
Mapoly0136s0020 Marchantia polymorpha HOM05D006031 ORTHO05D007417 1.6e-75 286.6 204 65.7
SGA_v2.0_scaffold387G50523 Striga asiatica HOM05D006031 ORTHO05D007417 8.0e-75 284.3 213 65.3
unitig_62.g23476 Utricularia gibba HOM05D006031 ORTHO05D007417 2.6e-73 279.3 215 67.0
AagrBONN_evm.TU.Sc2ySwM_228.3645 Anthoceros agrestis HOM05D006031 ORTHO05D007417 4.1e-71 271.9 204 63.2
Dinv41633 Davidia involucrata HOM05D006031 ORTHO05D007417 5.9e-70 268.1 169 76.3
Haze_25783 Corylus avellana HOM05D006031 ORTHO05D007417 6.5e-69 264.6 193 69.4
Prupe.7G225500 Prunus persica HOM05D006031 ORTHO05D007417 8.5e-69 264.2 179 72.6
Hma1.2p1_0945F.1_g240060 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 2.5e-68 262.7 169 76.3
Pp3c6_12910 Physcomitrium patens HOM05D006031 ORTHO05D007417 3.2e-68 262.3 209 60.3
Rhsim05G0043800 Rhododendron simsii HOM05D006031 ORTHO05D000070 2.3e-66 256.1 259 55.2
ClCG06G015420 Citrullus lanatus HOM05D006031 ORTHO05D007417 6.8e-66 254.6 177 69.5
SMO304G0145 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 6.8e-66 254.6 204 62.3
CARHR236620 Cardamine hirsuta HOM05D006031 ORTHO05D007417 2.6e-65 252.7 208 62.0
SMO164G0018 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 4.4e-65 251.9 204 61.8
Psat1g044640 Pisum sativum HOM05D006031 ORTHO05D007417 1.0e-61 240.7 158 73.4
Lj2g0026722 Lotus japonicus HOM05D006031 ORTHO05D007417 1.5e-60 236.9 158 72.8
MSTRG.26365 Avicennia marina HOM05D006031 ORTHO05D007417 9.8e-57 224.2 158 71.5
PGSC0003DMG400013889 Solanum tuberosum HOM05D000011 ORTHO05D007417 1.7e-56 223.4 199 59.3
Cre08.g384700 Chlamydomonas reinhardtii HOM05D006031 ORTHO05D007417 9.8e-49 197.6 212 48.1
Sed0012983 Sechium edule HOM05D006031 ORTHO05D007417 1.2e-46 190.7 135 67.4
CBR_g49195 Chara braunii HOM05D005459 ORTHO05D006751 1.5e-44 183.7 183 51.9
PRCOL_00003743 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 1.2e-43 180.6 213 45.5
arahy.Tifrunner.gnm1.ann1.PEIA6U Arachis hypogaea HOM05D006031 ORTHO05D007417 8.1e-43 177.9 158 57.6
Lj4A429T15 Lonicera japonica HOM05D006031 ORTHO05D007417 1.1e-39 167.5 95 86.3
DCAR_012059 Daucus carota HOM05D006031 ORTHO05D007417 5.4e-39 165.2 130 63.1
Zm00001eb271350 Zea mays HOM05D006031 ORTHO05D007417 7.8e-38 161.4 124 62.1
Zm00001eb442390 Zea mays HOM05D006031 ORTHO05D007417 7.8e-38 161.4 124 62.1
MCO05G480 Micromonas commoda HOM05D006031 ORTHO05D007417 2.8e-35 152.9 216 44.4
Haze_26211 Corylus avellana HOM05D006031 ORTHO05D007417 1.9e-31 140.2 223 36.3
Haze_27462 Corylus avellana HOM05D006031 ORTHO05D007417 1.9e-31 140.2 223 36.3
Lsat_1_v5_gn_8_38160 Lactuca sativa HOM05D006031 ORTHO05D007417 2.7e-22 109.8 96 61.5
PRCOL_00005480 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 1.9e-20 103.6 197 38.1
AUR62033208 Chenopodium quinoa HOM05D003603 ORTHO05D004186 1.1e-18 97.8 53 88.7
AUR62044225 Chenopodium quinoa HOM05D003603 ORTHO05D004186 1.1e-18 97.8 52 90.4
BcaC09g51665 Brassica carinata HOM05D006031 ORTHO05D007417 1.5e-17 94.0 88 55.7
Zm00001eb271390 Zea mays HOM05D006031 ORTHO05D007417 1.9e-15 87.0 53 79.2
SEGI_21752 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 3.5e-14 82.8 57 64.9
SEGI_07643 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 2.8e-11 73.2 73 52.1
Glyma.09G193200 Glycine max HOM05D006031 ORTHO05D007417 1.1e-10 71.2 73 52.1
MBI06_g04307_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 2.9e-08 63.2 134 37.3
arahy.Tifrunner.gnm1.ann1.43H8SX Arachis hypogaea HOM05D000371 ORTHO05D013217 4.9e-08 62.4 40 60.0
Thhalv10002738m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 1.1e-07 61.2 39 74.4
COL.COLO4_34793 Corchorus olitorius HOM05D006031 ORTHO05D007417 1.4e-07 60.8 33 84.8
VMungo0464G0776 Vigna mungo HOM05D000002 ORTHO05D000001 2.1e-06 57.0 45 64.4


User provided reference genes

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