Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 0.0e+00 1797.7 919 100.0
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1504.2 914 85.9
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 0.0e+00 1412.5 915 79.6
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 0.0e+00 1400.2 873 82.9
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 0.0e+00 1377.8 911 77.5
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 0.0e+00 1365.9 912 76.4
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 0.0e+00 1364.4 985 72.4
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 0.0e+00 1352.0 911 76.2
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 0.0e+00 1338.6 909 75.0
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 0.0e+00 1338.6 911 76.0
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 0.0e+00 1334.7 911 76.4
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 0.0e+00 1331.6 911 75.1
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 0.0e+00 1329.7 908 74.6
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 0.0e+00 1328.9 909 75.0
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 0.0e+00 1328.9 904 75.1
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1328.9 911 75.1
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 0.0e+00 1322.8 908 74.8
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 0.0e+00 1322.0 908 75.2
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 0.0e+00 1315.4 911 73.2
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 0.0e+00 1312.4 911 74.0
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1311.2 925 73.1
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1310.8 908 74.6
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1301.6 908 73.9
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 0.0e+00 1296.6 910 72.9
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 0.0e+00 1295.0 911 72.3
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1292.7 925 72.6
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 0.0e+00 1290.8 922 72.7
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1290.0 910 72.9
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 0.0e+00 1284.6 912 73.2
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1284.2 917 72.6
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 0.0e+00 1283.9 950 70.1
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 0.0e+00 1283.1 902 75.8
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 0.0e+00 1266.9 960 68.8
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 0.0e+00 1266.5 923 72.2
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 0.0e+00 1265.0 902 72.8
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 0.0e+00 1261.9 911 72.4
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 0.0e+00 1260.4 911 72.1
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 0.0e+00 1258.8 912 70.7
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 0.0e+00 1257.3 1068 64.5
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 0.0e+00 1257.3 910 72.2
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 0.0e+00 1256.5 901 72.1
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 0.0e+00 1254.6 861 74.4
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 0.0e+00 1253.4 913 71.9
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 0.0e+00 1250.7 911 71.2
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 0.0e+00 1247.3 923 71.2
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 0.0e+00 1246.5 910 71.5
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 0.0e+00 1240.7 868 73.2
FAN05G0785 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1240.7 1082 62.4
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 0.0e+00 1239.2 911 70.4
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 0.0e+00 1223.4 926 70.3
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 0.0e+00 1219.5 912 69.7
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 0.0e+00 1219.1 872 72.8
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 0.0e+00 1218.0 899 70.5
COL.COLO4_38399 Corchorus olitorius HOM05D004564 ORTHO05D006106 0.0e+00 1205.7 930 68.0
HanXRQChr10g0292821 Helianthus annuus HOM05D004564 ORTHO05D006106 0.0e+00 1199.1 896 70.1
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 0.0e+00 1182.5 977 64.2
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 0.0e+00 1172.1 911 67.2
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 0.0e+00 1164.8 912 65.6
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 0.0e+00 1162.9 912 65.2
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 0.0e+00 1161.7 917 65.0
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 0.0e+00 1159.1 760 77.9
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1154.4 911 64.5
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 0.0e+00 1154.0 911 65.6
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1153.7 917 64.7
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 0.0e+00 1151.3 917 64.7
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 0.0e+00 1150.6 870 69.7
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 0.0e+00 1149.8 913 65.3
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 0.0e+00 1145.6 913 65.0
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 0.0e+00 1143.6 915 64.8
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1131.3 912 64.5
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 0.0e+00 1129.4 912 65.4
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 0.0e+00 1123.2 912 63.9
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 0.0e+00 1104.7 919 65.9
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 0.0e+00 1104.7 1151 54.6
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 0.0e+00 1102.0 911 62.9
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1087.4 910 62.0
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 0.0e+00 1087.4 911 64.9
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 4.4e-311 1071.2 939 60.1
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 3.6e-310 1068.1 707 78.5
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 4.8e-310 1067.8 861 64.2
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 1.1e-309 1066.6 758 72.7
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 1.8e-309 1065.8 914 61.7
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 6.9e-309 1063.9 1008 58.3
C08p51140 Brassica napus HOM05D004564 ORTHO05D006106 9.3e-306 1053.5 912 60.3
BolC8t52640H Brassica oleracea HOM05D004564 ORTHO05D006106 7.4e-303 1043.9 930 59.1
unitig_37.g12587 Utricularia gibba HOM05D004564 ORTHO05D006106 1.9e-298 1029.2 946 58.5
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 1.0e-291 1006.9 914 58.3
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 3.4e-284 981.9 720 71.1
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 3.4e-284 981.9 773 66.8
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 6.7e-280 967.6 725 68.8
Os12g0626300 Oryza sativa ssp. japonica HOM05D004564 ORTHO05D006106 2.0e-276 956.1 919 56.9
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 7.9e-273 944.1 632 77.2
Zm00001eb128180 Zea mays HOM05D004564 ORTHO05D006106 7.4e-263 911.0 909 55.2
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 2.8e-262 909.1 641 72.5
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 5.5e-258 894.8 598 75.1
vmacro08736 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 2.3e-235 819.7 523 82.4
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 7.5e-223 778.1 571 69.5
CARHR006200 Cardamine hirsuta HOM05D004564 ORTHO05D006106 1.6e-209 733.8 562 66.9
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 8.4e-190 668.3 486 72.0
Psat2g017120 Pisum sativum HOM05D004564 ORTHO05D006106 1.3e-179 634.4 421 76.5
Pp3c3_33140 Physcomitrium patens HOM05D004564 ORTHO05D006106 6.2e-177 625.5 908 42.8
ATR0763G133 Amborella trichopoda HOM05D004564 ORTHO05D006106 5.8e-175 619.0 551 60.4
Hma1.2p1_0539F.1_g174590 Hydrangea macrophylla HOM05D004564 ORTHO05D006106 5.1e-171 605.9 410 76.8
MBI18_g13604_MAGBIO Magnolia biondii HOM05D004564 ORTHO05D006106 2.4e-168 597.0 899 43.0
FAN02G2671 Fragaria x ananassa HOM05D004564 ORTHO05D006106 1.1e-162 578.2 462 67.5
BcaNung07074 Brassica carinata HOM05D004564 ORTHO05D006106 1.5e-162 577.8 433 68.6
vmacro08737 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 5.7e-162 575.9 629 54.1
AagrBONN_evm.TU.Sc2ySwM_228.5505 Anthoceros agrestis HOM05D004564 ORTHO05D006106 2.6e-151 540.4 922 38.7
SMO174G0184 Selaginella moellendorffii HOM05D004564 ORTHO05D006106 3.6e-148 530.0 908 38.0
SHI30099 Sapria himalayana HOM05D004564 ORTHO05D006106 7.4e-146 522.3 605 50.7
Mapoly0007s0190 Marchantia polymorpha HOM05D004564 ORTHO05D006106 1.6e-135 488.0 926 36.8
Lalb_Chr10g0106581 Lupinus albus HOM05D004564 ORTHO05D006106 1.6e-124 451.4 293 78.5
arahy.Tifrunner.gnm1.ann1.UKG9X7 Arachis hypogaea HOM05D004564 ORTHO05D006106 4.9e-113 413.3 345 63.5
HPP92_001899 Vanilla planifolia HOM05D004564 ORTHO05D006106 5.4e-104 383.3 675 39.9
CBR_g44342 Chara braunii HOM05D000019 ORTHO05D000353 1.7e-102 378.3 589 40.1
GSVIVG01013077001 Vitis vinifera HOM05D004564 ORTHO05D006106 9.9e-98 362.5 235 80.0
CAN.G3149.1 Capsicum annuum HOM05D004564 ORTHO05D006106 3.5e-95 354.0 228 80.3
SEGI_14916 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 2.1e-87 328.2 271 63.8
MD17G1134700 Malus domestica HOM05D004564 ORTHO05D006106 1.3e-81 308.9 284 62.3
HPP92_001867 Vanilla planifolia HOM05D004564 ORTHO05D006106 8.1e-76 289.7 596 36.7
Glyma.02G284500 Glycine max HOM05D004564 ORTHO05D006106 3.1e-67 261.2 210 65.2
TAR626G0359 Trochodendron aralioides HOM05D004564 ORTHO05D006106 1.1e-61 242.7 150 82.7
MD17G1134600 Malus domestica HOM05D004564 ORTHO05D006106 9.6e-61 239.6 258 52.3
CDE02G3007 Ceratophyllum demersum HOM05D004564 ORTHO05D006106 6.3e-52 210.3 146 71.9
Peaxi162Scf00922g00318 Petunia axillaris HOM05D004564 ORTHO05D006106 1.5e-45 189.1 127 75.6
arahy.Tifrunner.gnm1.ann1.RHC2N4 Arachis hypogaea HOM05D000056 ORTHO05D006106 7.9e-39 166.8 157 55.4
BcaNung07000 Brassica carinata HOM05D004564 ORTHO05D006106 1.1e-35 156.4 126 58.7
SHI30097 Sapria himalayana HOM05D004564 ORTHO05D006106 2.6e-34 151.8 222 41.4
TAR626G0994 Trochodendron aralioides HOM05D004564 ORTHO05D006106 1.3e-33 149.4 95 77.9
Rhsim02G0232100 Rhododendron simsii HOM05D000252 ORTHO05D000307 3.8e-33 147.9 153 59.5
Phvul.001G172501 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 4.2e-32 144.4 132 59.1
Lj5g0002046 Lotus japonicus HOM05D004564 ORTHO05D000491 1.8e-30 139.0 192 45.3
ATR0763G243 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.1e-29 136.3 166 46.4
ATR0763G128 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.7e-25 122.5 75 72.0
ATR0820G167 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.9e-25 121.7 120 52.5
Rhsim12G0011200 Rhododendron simsii HOM05D004564 ORTHO05D000827 5.2e-22 110.9 100 66.0
ATR0598G245 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.8e-20 105.1 105 54.3
Lj5g0014248 Lotus japonicus HOM05D004564 ORTHO05D006106 1.1e-19 103.2 113 51.3
TPR.G10922 Trifolium pratense HOM05D004564 ORTHO05D006106 7.0e-19 100.5 84 65.5
Rhsim12G0011100 Rhododendron simsii HOM05D004564 ORTHO05D006106 1.6e-18 99.4 69 68.1
Zm00001eb370760 Zea mays HOM05D004564 ORTHO05D006106 1.6e-18 99.4 65 73.8
MCO11G813 Micromonas commoda HOM05D004564 ORTHO05D006106 5.9e-18 97.4 990 21.2
Rhsim12G0011500 Rhododendron simsii HOM05D004564 ORTHO05D006106 3.8e-17 94.7 67 65.7
Lalb_Chr10g0106561 Lupinus albus HOM05D004564 ORTHO05D006106 2.5e-16 92.0 57 75.4
Rhsim12G0011600 Rhododendron simsii HOM05D004564 ORTHO05D000827 9.8e-13 80.1 66 69.7
SEGI_30840 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 1.3e-12 79.7 113 42.5
TPR.G35705 Trifolium pratense HOM05D023930 ORTHO05D018030 8.3e-12 77.0 141 39.7
Cre01.g034650 Chlamydomonas reinhardtii HOM05D004564 ORTHO05D006106 2.4e-11 75.5 960 20.3
SHI30098 Sapria himalayana HOM05D004564 ORTHO05D006106 3.1e-11 75.1 236 31.4
TPR.G7402 Trifolium pratense HOM05D023930 ORTHO05D006106 4.1e-11 74.7 141 39.0
TPR.G8869 Trifolium pratense HOM05D020190 ORTHO05D018030 9.5e-08 63.5 90 41.1
SEGI_33722 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 1.2e-07 63.2 82 46.3


User provided reference genes

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