Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 2.9e-45 184.9 94 100.0
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 4.9e-37 157.5 88 88.6
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 5.4e-36 154.1 88 86.4
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 3.0e-34 148.3 85 83.5
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 2.5e-33 145.2 88 79.5
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 5.6e-33 144.1 88 81.8
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 7.4e-33 143.7 88 81.8
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 6.2e-32 140.6 89 80.9
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 8.1e-32 140.2 89 80.9
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 1.8e-31 139.0 88 79.5
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 5.3e-31 137.5 88 78.4
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 2.6e-30 135.2 88 77.3
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 3.4e-30 134.8 88 76.1
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 9.9e-30 133.3 88 72.7
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 1.3e-29 132.9 88 75.0
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 1.3e-29 132.9 88 75.0
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 2.9e-29 131.7 88 71.6
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 4.9e-29 131.0 88 76.1
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 7.1e-28 127.1 88 69.3
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 1.6e-27 125.9 87 70.1
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 3.5e-27 124.8 88 68.2
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 6.0e-27 124.0 88 67.0
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 7.9e-27 123.6 88 69.3
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 7.9e-27 123.6 92 69.6
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 1.0e-26 123.2 88 67.0
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 1.0e-26 123.2 88 68.2
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 1.3e-26 122.9 91 68.1
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.3e-26 122.9 83 74.7
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 1.8e-26 122.5 91 69.2
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 2.3e-26 122.1 88 68.2
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 3.0e-26 121.7 88 67.0
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 3.0e-26 121.7 88 70.5
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 8.7e-26 120.2 88 65.9
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 5.6e-25 117.5 93 69.9
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 7.4e-25 117.1 83 68.7
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 9.6e-25 116.7 89 65.2
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 9.6e-25 116.7 89 65.2
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.3e-24 116.3 86 66.3
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 2.1e-24 115.5 89 64.0
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.8e-24 115.2 89 64.0
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 4.8e-24 114.4 85 70.6
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 6.2e-24 114.0 88 63.6
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 6.2e-24 114.0 87 67.8
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 8.2e-24 113.6 87 67.8
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 8.2e-24 113.6 89 69.7
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 1.1e-23 113.2 88 65.9
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 2.4e-23 112.1 86 68.6
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 5.3e-23 110.9 96 66.7
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 6.9e-23 110.5 85 68.2
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 9.0e-23 110.2 85 68.2
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 9.0e-23 110.2 98 63.3
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 1.2e-22 109.8 79 72.2
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 1.2e-22 109.8 79 72.2
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 2.0e-22 109.0 79 72.2
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 2.0e-22 109.0 77 72.7
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 4.5e-22 107.8 85 67.1
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 5.8e-22 107.5 79 73.4
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.0e-21 106.7 88 60.2
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 1.3e-21 106.3 85 61.2
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 3.8e-21 104.8 82 67.1
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 4.9e-21 104.4 88 63.6
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 4.9e-21 104.4 87 65.5
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.1e-20 103.2 84 59.5
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 3.2e-20 101.7 89 59.6
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 3.2e-20 101.7 84 58.3
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 4.2e-20 101.3 89 59.6
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 4.2e-20 101.3 89 59.6
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 5.5e-20 100.9 90 61.1
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 5.5e-20 100.9 89 61.8
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 7.1e-20 100.5 94 62.8
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 7.1e-20 100.5 89 59.6
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 1.6e-19 99.4 90 61.1
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 2.7e-19 98.6 89 60.7
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 2.7e-19 98.6 79 67.1
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 6.0e-19 97.4 84 61.9
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 1.0e-18 96.7 89 61.8
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 1.3e-18 96.3 79 64.6
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 1.8e-18 95.9 79 62.0
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 1.8e-18 95.9 88 60.2
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 3.0e-18 95.1 80 62.5
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 3.9e-18 94.7 89 59.6
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 6.7e-18 94.0 79 67.1
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 8.7e-18 93.6 67 65.7
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 1.1e-17 93.2 90 61.1
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 1.5e-17 92.8 71 69.0
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 3.3e-17 91.7 84 57.1
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 3.3e-17 91.7 84 57.1
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 4.3e-17 91.3 89 58.4
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 7.4e-17 90.5 88 56.8
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 7.4e-17 90.5 89 57.3
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 1.3e-16 89.7 79 62.0
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 1.3e-16 89.7 79 65.8
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 1.3e-16 89.7 95 55.8
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.2e-16 89.0 62 69.4
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 2.2e-16 89.0 89 59.6
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 2.8e-16 88.6 80 57.5
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 3.7e-16 88.2 88 53.4
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 4.8e-16 87.8 89 56.2
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 6.3e-16 87.4 76 56.6
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 6.3e-16 87.4 88 52.3
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 6.3e-16 87.4 62 67.7
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 6.3e-16 87.4 62 67.7
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 8.2e-16 87.0 89 56.2
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 8.2e-16 87.0 82 58.5
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 1.4e-15 86.3 82 51.2
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.8e-15 85.9 90 57.8
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 2.4e-15 85.5 97 53.6
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 4.1e-15 84.7 87 54.0
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 6.9e-15 84.0 90 53.3
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 9.0e-15 83.6 88 56.8
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 1.2e-14 83.2 81 54.3
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 4.5e-14 81.3 42 92.9
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 4.5e-14 81.3 83 54.2
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 5.9e-14 80.9 64 67.2
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 7.7e-14 80.5 83 53.0
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 7.7e-14 80.5 94 53.2
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 1.0e-13 80.1 82 52.4
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 1.0e-13 80.1 76 60.5
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 2.9e-13 78.6 64 64.1
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 2.9e-13 78.6 81 46.9
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 3.8e-13 78.2 88 50.0
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 8.5e-13 77.0 43 81.4
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 1.4e-12 76.3 81 50.6
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 1.9e-12 75.9 55 65.5
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 1.9e-12 75.9 80 53.8
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 1.9e-12 75.9 69 58.0
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 3.2e-12 75.1 89 51.7
HPP92_024205 Vanilla planifolia HOM05D004056 ORTHO05D004894 4.2e-12 74.7 82 56.1
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 7.2e-12 73.9 42 83.3
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 7.2e-12 73.9 79 50.6
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 1.2e-11 73.2 41 82.9
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 2.1e-11 72.4 64 56.2
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 3.6e-11 71.6 86 45.3
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 3.6e-11 71.6 68 57.4
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 7.9e-11 70.5 83 48.2
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 1.0e-10 70.1 47 68.1
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 1.8e-10 69.3 47 68.1
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 2.3e-10 68.9 55 56.4
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 3.0e-10 68.6 89 51.7
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 3.9e-10 68.2 46 69.6
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 1.5e-09 66.2 47 66.0
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 1.5e-09 66.2 47 66.0
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 1.5e-09 66.2 47 66.0
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 1.5e-09 66.2 47 66.0
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 3.3e-09 65.1 46 69.6
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 3.3e-09 65.1 47 63.8
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 3.3e-09 65.1 47 63.8
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 4.3e-09 64.7 55 58.2
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 7.4e-09 63.9 47 61.7
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 7.4e-09 63.9 47 61.7
HanXRQChr12g0358981 Helianthus annuus HOM05D004056 ORTHO05D004894 1.3e-08 63.2 42 69.0
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 2.2e-08 62.4 47 63.8
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 2.8e-08 62.0 47 59.6
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 2.8e-08 62.0 42 66.7
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 6.3e-08 60.8 61 49.2
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 4.1e-07 58.2 69 47.8
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 5.3e-07 57.8 57 49.1
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 6.9e-07 57.4 42 61.9
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 1.2e-06 56.6 33 75.8
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 3.4e-06 55.1 57 50.9


User provided reference genes

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