Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004789 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D112557 2.0e-42 175.3 83 100.0
Rhsim04G0179400 Rhododendron simsii HOM05D000001 ORTHO05D000003 3.2e-08 61.6 49 67.3
vmacro08476 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 5.5e-08 60.8 49 65.3
vmacro08499 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 5.5e-08 60.8 49 65.3
Gohir.D13G164100 Gossypium hirsutum HOM05D000001 ORTHO05D000003 9.4e-08 60.1 49 67.3
Gorai.013G198600 Gossypium raimondii HOM05D000001 ORTHO05D000003 9.4e-08 60.1 49 67.3
Lj3A692T59 Lonicera japonica HOM05D000001 ORTHO05D000003 9.4e-08 60.1 49 63.3
Prupe.1G040600 Prunus persica HOM05D000001 ORTHO05D000003 9.4e-08 60.1 58 56.9
QL02p051884 Quercus lobata HOM05D000001 ORTHO05D000003 9.4e-08 60.1 49 67.3
QL05p042486 Quercus lobata HOM05D000001 ORTHO05D000003 1.2e-07 59.7 49 67.3
Cfa022945 Carpinus fangiana HOM05D000001 ORTHO05D000003 1.6e-07 59.3 49 67.3
Cfa022949 Carpinus fangiana HOM05D000001 ORTHO05D000003 1.6e-07 59.3 49 67.3
Gohir.A13G159200 Gossypium hirsutum HOM05D000001 ORTHO05D000003 3.6e-07 58.2 49 65.3
PGR031G1198 Punica granatum HOM05D000001 ORTHO05D000003 3.6e-07 58.2 48 64.6
Thecc.05G235500 Theobroma cacao HOM05D000001 ORTHO05D000003 4.7e-07 57.8 49 63.3
CSS0008042 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 6.1e-07 57.4 40 72.5
ClCG01G024010 Citrullus lanatus HOM05D000001 ORTHO05D000003 6.1e-07 57.4 48 62.5
RcHm_v2.0_Chr4g0393661 Rosa chinensis HOM05D000001 ORTHO05D000003 6.1e-07 57.4 49 63.3
CiPaw.01G183200 Carya illinoinensis HOM05D000001 ORTHO05D000003 8.0e-07 57.0 48 66.7
MELO3C007189.2 Cucumis melo HOM05D000001 ORTHO05D000003 8.0e-07 57.0 48 64.6
HanXRQChr13g0421271 Helianthus annuus HOM05D000001 ORTHO05D000003 1.4e-06 56.2 51 58.8
MD13G1215400 Malus domestica HOM05D000001 ORTHO05D000003 1.4e-06 56.2 49 61.2
PSO017G0100 Papaver somniferum HOM05D000001 ORTHO05D000003 1.4e-06 56.2 66 48.5
PSO478G0324 Papaver somniferum HOM05D000001 ORTHO05D000003 1.4e-06 56.2 66 48.5
Manes.15G041900 Manihot esculenta HOM05D000001 ORTHO05D000003 2.3e-06 55.5 48 60.4
Duzib177G0827 Durio zibethinus HOM05D000001 ORTHO05D000003 3.0e-06 55.1 49 63.3
FvH4_4g03820 Fragaria vesca HOM05D000001 ORTHO05D000003 3.0e-06 55.1 49 59.2
FAN12G0462 Fragaria x ananassa HOM05D000001 ORTHO05D000003 3.0e-06 55.1 49 59.2
Psat7g007280 Pisum sativum HOM05D000001 ORTHO05D000003 3.0e-06 55.1 48 62.5
Atru.chr4.2045 Acer truncatum HOM05D000001 ORTHO05D000003 4.0e-06 54.7 52 57.7
SalBow8G2063 Salvia bowleyana HOM05D000001 ORTHO05D000003 4.0e-06 54.7 69 37.7
TPR.G19256 Trifolium pratense HOM05D000001 ORTHO05D000003 5.2e-06 54.3 48 60.4
TWI09G1242 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 5.2e-06 54.3 66 51.5
VMungo0251G3210 Vigna mungo HOM05D000001 ORTHO05D000003 5.2e-06 54.3 48 60.4
arahy.Tifrunner.gnm1.ann1.03BFRT Arachis hypogaea HOM05D000001 ORTHO05D000003 6.8e-06 53.9 48 60.4
DCAR_003428 Daucus carota HOM05D000001 ORTHO05D000003 6.8e-06 53.9 49 61.2
Eucgr.H00147 Eucalyptus grandis HOM05D000001 ORTHO05D000003 6.8e-06 53.9 48 56.2
Sc19g0003720 Simmondsia chinensis HOM05D000001 ORTHO05D000003 6.8e-06 53.9 48 62.5
FAN17G2991 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.8e-06 53.5 49 57.1
Lj4g0013642 Lotus japonicus HOM05D000001 ORTHO05D000003 8.8e-06 53.5 48 60.4


User provided reference genes

Program Settings