Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004783 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 4.4e-26 120.6 62 100.0
CSS0033619 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 1.1e-16 89.4 59 78.0
Cfa019082 Carpinus fangiana HOM05D004802 ORTHO05D005591 6.0e-15 83.6 59 74.6
Dinv41117 Davidia involucrata HOM05D001600 ORTHO05D001502 1.0e-14 82.8 59 69.5
CiPaw.11G030400 Carya illinoinensis HOM05D004802 ORTHO05D005591 1.7e-14 82.0 59 72.9
Haze_07452 Corylus avellana HOM05D004802 ORTHO05D005591 3.9e-14 80.9 59 71.2
MBI18_g21823_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 3.9e-14 80.9 59 67.8
Sed0010100 Sechium edule HOM05D004802 ORTHO05D005591 5.0e-14 80.5 59 66.1
CsaV3_1G001710 Cucumis sativus L. HOM05D004802 ORTHO05D005591 6.6e-14 80.1 59 64.4
QL03p066954 Quercus lobata HOM05D004802 ORTHO05D005591 1.1e-13 79.3 59 67.8
vmacro16596 Vaccinium macrocarpon HOM05D004802 ORTHO05D005591 1.1e-13 79.3 59 69.5
MELO3C017111.2 Cucumis melo HOM05D004802 ORTHO05D005591 1.5e-13 79.0 59 64.4
ECA232G0284 Erigeron canadensis HOM05D004802 ORTHO05D005591 1.5e-13 79.0 59 64.4
Rhsim12G0162600 Rhododendron simsii HOM05D004802 ORTHO05D005591 1.5e-13 79.0 59 69.5
Lsat_1_v5_gn_5_17000 Lactuca sativa HOM05D004802 ORTHO05D005591 5.6e-13 77.0 59 62.7
Rhsim08G0169000 Rhododendron simsii HOM05D004802 ORTHO05D005591 5.6e-13 77.0 61 65.6
Cpa.g.sc110.33 Carica papaya HOM05D004802 ORTHO05D005591 9.5e-13 76.3 59 66.1
Nn2g12605 Nelumbo nucifera HOM05D004802 ORTHO05D005591 2.8e-12 74.7 59 62.7
PGR083G1798 Punica granatum HOM05D004802 ORTHO05D005591 2.8e-12 74.7 59 66.1
Oeu026523.1 Olea europaea HOM05D004802 ORTHO05D005591 4.7e-12 73.9 60 63.3
DCAR_021562 Daucus carota HOM05D004802 ORTHO05D005591 6.2e-12 73.6 59 62.7
TAR362G1012 Trochodendron aralioides HOM05D004802 ORTHO05D005591 6.2e-12 73.6 59 64.4
CANSAT80G2080 Cannabis sativa HOM05D004802 ORTHO05D005591 1.1e-11 72.8 59 62.7
Migut.D01783 Erythranthe guttata HOM05D004802 ORTHO05D005591 1.1e-11 72.8 59 62.7
Hma1.2p1_0483F.1_g162710 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 1.1e-11 72.8 59 62.7
Glyma.06G192200 Glycine max HOM05D004802 ORTHO05D005591 1.4e-11 72.4 60 65.0
ATR0796G060 Amborella trichopoda HOM05D004802 ORTHO05D005591 1.8e-11 72.0 59 62.7
Glyma.04G171700 Glycine max HOM05D004802 ORTHO05D005591 1.8e-11 72.0 60 63.3
GSVIVG01007807001 Vitis vinifera HOM05D004802 ORTHO05D005591 1.8e-11 72.0 59 64.4
Potri.014G111100 Populus trichocarpa HOM05D004802 ORTHO05D005591 3.1e-11 71.2 59 61.0
DCAR_016496 Daucus carota HOM05D004802 ORTHO05D005591 4.0e-11 70.9 59 61.0
Nitab4.5_0000499g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 4.0e-11 70.9 59 59.3
QL10p013461 Quercus lobata HOM05D004802 ORTHO05D005591 4.0e-11 70.9 55 67.3
MSTRG.23103 Avicennia marina HOM05D004802 ORTHO05D005591 5.2e-11 70.5 59 64.4
MBI19_g12136_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 5.2e-11 70.5 59 62.7
HanXRQChr05g0155531 Helianthus annuus HOM05D004802 ORTHO05D005591 8.9e-11 69.7 59 57.6
Lalb_Chr23g0265291 Lupinus albus HOM05D004802 ORTHO05D005591 8.9e-11 69.7 65 53.8
Manes.12G158200 Manihot esculenta HOM05D004802 ORTHO05D005591 8.9e-11 69.7 59 64.4
Prupe.5G177600 Prunus persica HOM05D004802 ORTHO05D005591 8.9e-11 69.7 59 61.0
SGA_v2.0_scaffold114G31844 Striga asiatica HOM05D004802 ORTHO05D005591 1.2e-10 69.3 59 61.0
AL1G18110 Arabidopsis lyrata HOM05D004802 ORTHO05D005591 1.5e-10 68.9 59 57.6
Eucgr.B00348 Eucalyptus grandis HOM05D004802 ORTHO05D005591 1.5e-10 68.9 61 59.0
Sp1g06517 Schrenkiella parvula HOM05D004802 ORTHO05D005591 1.5e-10 68.9 59 57.6
Sc12g0005500 Simmondsia chinensis HOM05D004802 ORTHO05D005591 2.6e-10 68.2 59 54.2
CARHR007640 Cardamine hirsuta HOM05D004802 ORTHO05D005591 3.4e-10 67.8 59 54.2
MD14G1184900 Malus domestica HOM05D004802 ORTHO05D005591 3.4e-10 67.8 57 61.4
Cpa.g.sc170.28 Carica papaya HOM05D004802 ORTHO05D005591 4.4e-10 67.4 59 54.2
Phvul.009G188900 Phaseolus vulgaris HOM05D004802 ORTHO05D005591 5.8e-10 67.0 60 61.7
Solyc03g114050.3 Solanum lycopersicum HOM05D004802 ORTHO05D005591 5.8e-10 67.0 59 61.0
Sopen03g033100 Solanum pennellii HOM05D004802 ORTHO05D005591 5.8e-10 67.0 59 61.0
VMungo1309G2385 Vigna mungo HOM05D004802 ORTHO05D005591 5.8e-10 67.0 60 61.7
Aqoxy5G00387 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 7.5e-10 66.6 59 55.9
RcHm_v2.0_Chr7g0179521 Rosa chinensis HOM05D004802 ORTHO05D005591 7.5e-10 66.6 60 60.0
Peaxi162Scf00689g00332 Petunia axillaris HOM05D004802 ORTHO05D005591 9.8e-10 66.2 59 59.3
A09p66160 Brassica napus HOM05D004802 ORTHO05D005591 1.7e-09 65.5 59 55.9
BraA09t41954Z Brassica rapa HOM05D004802 ORTHO05D005591 1.7e-09 65.5 59 55.9
Actinidia34948 Actinidia chinensis HOM05D004802 ORTHO05D005591 2.2e-09 65.1 47 66.0
Actinidia19087 Actinidia chinensis HOM05D004802 ORTHO05D005591 2.9e-09 64.7 47 72.3
Cc00_g07690 Coffea canephora HOM05D004802 ORTHO05D005591 3.7e-09 64.3 59 54.2
THA.LOC104818227 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 3.7e-09 64.3 61 54.1
PGSC0003DMG400024483 Solanum tuberosum HOM05D004802 ORTHO05D005591 4.9e-09 63.9 59 59.3
Sc16g0001640 Simmondsia chinensis HOM05D004802 ORTHO05D005591 6.4e-09 63.5 60 55.0
arahy.Tifrunner.gnm1.ann1.J5PS4T Arachis hypogaea HOM05D004802 ORTHO05D005591 8.3e-09 63.2 64 57.8
LjContig00081g0027263 Lotus japonicus HOM05D004802 ORTHO05D005591 8.3e-09 63.2 59 55.9
SHI01130 Sapria himalayana HOM05D004802 ORTHO05D005591 8.3e-09 63.2 55 58.2
Hund18328 Selenicereus undatus HOM05D004802 ORTHO05D005591 8.3e-09 63.2 62 59.7
arahy.Tifrunner.gnm1.ann1.H02ACK Arachis hypogaea HOM05D004802 ORTHO05D005591 1.1e-08 62.8 61 55.7
ECA246G1319 Erigeron canadensis HOM05D004802 ORTHO05D005591 1.1e-08 62.8 56 57.1
BraA06t23701Z Brassica rapa HOM05D004802 ORTHO05D005591 1.4e-08 62.4 60 55.0
SalBow2G1273 Salvia bowleyana HOM05D004802 ORTHO05D005591 1.4e-08 62.4 60 58.3
AT1G07830 Arabidopsis thaliana HOM05D004802 ORTHO05D005591 1.9e-08 62.0 60 55.0
C05p05910 Brassica napus HOM05D005594 ORTHO05D006403 1.9e-08 62.0 60 53.3
BolC5t29353H Brassica oleracea HOM05D000129 ORTHO05D005591 1.9e-08 62.0 60 53.3
Carub.0005s0629 Capsella rubella HOM05D004802 ORTHO05D005591 2.4e-08 61.6 60 55.0
CDE01G0824 Ceratophyllum demersum HOM05D004802 ORTHO05D005591 2.4e-08 61.6 60 51.7
BcaC07g41973 Brassica carinata HOM05D004802 ORTHO05D005591 3.2e-08 61.2 63 54.0
C08p50320 Brassica napus HOM05D004802 ORTHO05D005591 3.2e-08 61.2 63 54.0
BolC8t52561H Brassica oleracea HOM05D004802 ORTHO05D005591 3.2e-08 61.2 63 54.0
Manes.15G185900 Manihot esculenta HOM05D004802 ORTHO05D005591 5.4e-08 60.5 59 59.3
unitig_27.g24928 Utricularia gibba HOM05D004802 ORTHO05D005591 5.4e-08 60.5 59 52.5
Cc00_g03600 Coffea canephora HOM05D004802 ORTHO05D005591 7.1e-08 60.1 58 56.9
Aqoxy3G02494 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 9.2e-08 59.7 60 56.7
PSO782G1633 Papaver somniferum HOM05D004802 ORTHO05D005591 1.2e-07 59.3 63 46.0
Psat2g170440 Pisum sativum HOM05D004802 ORTHO05D005591 1.2e-07 59.3 59 47.5
SEGI_23384 Sequoiadendron giganteum HOM05D004802 ORTHO05D005591 1.2e-07 59.3 59 57.6
arahy.Tifrunner.gnm1.ann1.RYE93B Arachis hypogaea HOM05D004802 ORTHO05D005591 1.6e-07 58.9 62 56.5
Hma1.2p1_2640F.1_g325880 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 2.1e-07 58.5 39 66.7
PSO170G0191 Papaver somniferum HOM05D004802 ORTHO05D005591 2.1e-07 58.5 63 47.6
THA.LOC104821462 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 2.7e-07 58.2 61 50.8
Cc00_g30360 Coffea canephora HOM05D004802 ORTHO05D005591 3.5e-07 57.8 58 51.7
TPR.G20968 Trifolium pratense HOM05D004802 ORTHO05D005591 3.5e-07 57.8 60 51.7
TPR.G6374 Trifolium pratense HOM05D004802 ORTHO05D005591 3.5e-07 57.8 60 51.7
Potri.002G185800 Populus trichocarpa HOM05D004802 ORTHO05D005591 4.6e-07 57.4 60 51.7
A06p04960 Brassica napus HOM05D005594 ORTHO05D006403 6.0e-07 57.0 64 50.0
AUR62025410 Chenopodium quinoa HOM05D004802 ORTHO05D005591 6.0e-07 57.0 59 54.2
HanXRQChr05g0163301 Helianthus annuus HOM05D004802 ORTHO05D005591 6.0e-07 57.0 62 53.2
HanXRQChr05g0163571 Helianthus annuus HOM05D004802 ORTHO05D005591 6.0e-07 57.0 62 53.2
RcHm_v2.0_Chr2g0130991 Rosa chinensis HOM05D004802 ORTHO05D005591 6.0e-07 57.0 57 56.1
Ah.08g213760 Amaranthus hybridus HOM05D004802 ORTHO05D005591 7.8e-07 56.6 59 52.5
EL10Ac7g17734 Beta vulgaris HOM05D004802 ORTHO05D005591 1.0e-06 56.2 59 54.2
AUR62008830 Chenopodium quinoa HOM05D004802 ORTHO05D005591 5.1e-06 53.9 60 53.3
BcaB02g06722 Brassica carinata HOM05D004802 ORTHO05D005591 6.6e-06 53.5 62 45.2


User provided reference genes

Program Settings