Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004775 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D001560 2.8e-85 318.5 160 100.0
CSS0010695 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D001560 1.3e-77 293.1 160 93.8
CSS0016166 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D001560 4.6e-67 258.1 154 85.7
CSS0026952 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D001560 1.1e-47 193.7 201 60.2
CSS0034261 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D001560 1.1e-47 193.7 201 60.2
Actinidia17233 Actinidia chinensis HOM05D000141 ORTHO05D000780 1.7e-34 149.8 143 60.8
Actinidia22801 Actinidia chinensis HOM05D001499 ORTHO05D001560 1.7e-34 149.8 143 61.5
Hma1.2p1_1280F.1_g272530 Hydrangea macrophylla HOM05D001499 ORTHO05D001560 2.3e-34 149.4 143 59.4
Cfa016805 Carpinus fangiana HOM05D001499 ORTHO05D001560 5.1e-34 148.3 143 60.1
Haze_19836 Corylus avellana HOM05D001499 ORTHO05D001560 5.1e-34 148.3 143 60.1
Dinv17969 Davidia involucrata HOM05D001499 ORTHO05D001560 5.1e-34 148.3 143 60.8
DCAR_020497 Daucus carota HOM05D001499 ORTHO05D001560 8.7e-34 147.5 143 59.4
Rhsim03G0027400 Rhododendron simsii HOM05D001499 ORTHO05D001560 1.1e-33 147.1 143 60.1
Actinidia39215 Actinidia chinensis HOM05D001499 ORTHO05D001560 1.5e-33 146.7 144 59.7
Dinv39621 Davidia involucrata HOM05D001499 ORTHO05D001560 3.3e-33 145.6 143 60.1
Lalb_Chr20g0110561 Lupinus albus HOM05D001499 ORTHO05D001560 3.3e-33 145.6 152 55.9
CSS0008595 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D001560 4.3e-33 145.2 143 60.1
CSS0040554 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D001560 4.3e-33 145.2 143 60.1
vmacro07834 Vaccinium macrocarpon HOM05D001499 ORTHO05D001560 4.3e-33 145.2 143 59.4
Ciclev10004686m.g Citrus clementina HOM05D001499 ORTHO05D001560 5.6e-33 144.8 143 57.3
Peaxi162Scf00130g00417 Petunia axillaris HOM05D001499 ORTHO05D001560 7.3e-33 144.4 144 56.9
Atru.chr1.1126 Acer truncatum HOM05D001499 ORTHO05D001560 1.3e-32 143.7 143 58.0
ECA236G5056 Erigeron canadensis HOM05D001499 ORTHO05D001560 1.3e-32 143.7 143 57.3
PSO384G4106 Papaver somniferum HOM05D001499 ORTHO05D001560 1.3e-32 143.7 143 56.6
Cpa.g.sc967.2 Carica papaya HOM05D001499 ORTHO05D001560 1.6e-32 143.3 143 57.3
CAN.G128.7 Capsicum annuum HOM05D001499 ORTHO05D001560 2.1e-32 142.9 143 56.6
Lj5g0024774 Lotus japonicus HOM05D001499 ORTHO05D001560 2.1e-32 142.9 143 57.3
Lalb_Chr25g0287171 Lupinus albus HOM05D001499 ORTHO05D001560 2.1e-32 142.9 143 56.6
Peaxi162Scf00109g00516 Petunia axillaris HOM05D001499 ORTHO05D001560 2.1e-32 142.9 143 56.6
Potri.006G049100 Populus trichocarpa HOM05D001499 ORTHO05D001560 2.1e-32 142.9 143 58.7
CiPaw.09G039100 Carya illinoinensis HOM05D001499 ORTHO05D001560 2.8e-32 142.5 143 59.4
Cc06_g17670 Coffea canephora HOM05D001499 ORTHO05D001560 2.8e-32 142.5 143 57.3
PSO339G1573 Papaver somniferum HOM05D001499 ORTHO05D001560 2.8e-32 142.5 143 55.9
Duzib093G1808 Durio zibethinus HOM05D001499 ORTHO05D001560 3.6e-32 142.1 147 57.1
Manes.08G051700 Manihot esculenta HOM05D001499 ORTHO05D001560 3.6e-32 142.1 143 57.3
Nitab4.5_0003307g0080 Nicotiana tabacum HOM05D001499 ORTHO05D001560 3.6e-32 142.1 143 56.6
Solyc10g080080.3 Solanum lycopersicum HOM05D001499 ORTHO05D001560 3.6e-32 142.1 143 57.3
Sopen10g030690 Solanum pennellii HOM05D001499 ORTHO05D001560 3.6e-32 142.1 143 57.3
THA.LOC104802064 Tarenaya hassleriana HOM05D001499 ORTHO05D001560 3.6e-32 142.1 143 58.0
Medtr1g053160 Medicago truncatula HOM05D001499 ORTHO05D001560 4.8e-32 141.7 143 57.3
Psat6g120840 Pisum sativum HOM05D001499 ORTHO05D001560 4.8e-32 141.7 143 57.3
DCAR_009067 Daucus carota HOM05D001499 ORTHO05D001560 6.2e-32 141.4 143 58.0
Manes.09G020100 Manihot esculenta HOM05D001499 ORTHO05D001560 6.2e-32 141.4 143 57.3
Nitab4.5_0000364g0080 Nicotiana tabacum HOM05D001499 ORTHO05D001560 6.2e-32 141.4 152 53.9
PGSC0003DMG400023691 Solanum tuberosum HOM05D001499 ORTHO05D001560 6.2e-32 141.4 143 56.6
TWI77G0056 Tripterygium wilfordii HOM05D001499 ORTHO05D001560 6.2e-32 141.4 143 56.6
CiPaw.10G034300 Carya illinoinensis HOM05D001499 ORTHO05D001560 8.1e-32 141.0 143 55.9
COL.COLO4_04401 Corchorus olitorius HOM05D001499 ORTHO05D001560 8.1e-32 141.0 143 57.3
Lju124C43T7 Lonicera japonica HOM05D001499 ORTHO05D001560 8.1e-32 141.0 143 57.3
Oeu008164.1 Olea europaea HOM05D001499 ORTHO05D001560 8.1e-32 141.0 143 55.2
RcHm_v2.0_Chr3g0482921 Rosa chinensis HOM05D001499 ORTHO05D001560 8.1e-32 141.0 143 54.5
TPR.G29104 Trifolium pratense HOM05D001499 ORTHO05D001560 8.1e-32 141.0 143 56.6
TAR636G3397 Trochodendron aralioides HOM05D001499 ORTHO05D001560 8.1e-32 141.0 143 58.0
Lsat_1_v5_gn_5_161241 Lactuca sativa HOM05D001499 ORTHO05D001560 1.1e-31 140.6 143 57.3
Sabra06G0034400 Salix brachista HOM05D001499 ORTHO05D001560 1.1e-31 140.6 143 56.6
Ah.04g151570 Amaranthus hybridus HOM05D001499 ORTHO05D001560 1.4e-31 140.2 143 56.6
Nn7g36317 Nelumbo nucifera HOM05D001499 ORTHO05D001560 1.4e-31 140.2 143 57.3
Gohir.D03G069600 Gossypium hirsutum HOM05D001499 ORTHO05D001560 1.8e-31 139.8 143 55.9
Gorai.003G091100 Gossypium raimondii HOM05D001499 ORTHO05D001560 1.8e-31 139.8 143 55.9
Thecc.05G149400 Theobroma cacao HOM05D001499 ORTHO05D001560 1.8e-31 139.8 143 56.6
FAN02G2115 Fragaria x ananassa HOM05D001499 ORTHO05D001560 2.4e-31 139.4 143 53.8
FAN09G3104 Fragaria x ananassa HOM05D001499 ORTHO05D001560 2.4e-31 139.4 143 53.8
Gohir.A02G107400 Gossypium hirsutum HOM05D001499 ORTHO05D001560 2.4e-31 139.4 143 55.2
GSVIVG01033256001 Vitis vinifera HOM05D001499 ORTHO05D001560 2.4e-31 139.4 143 55.9
PGR004G0169 Punica granatum HOM05D001499 ORTHO05D001560 3.1e-31 139.0 143 57.3
Migut.J01745 Erythranthe guttata HOM05D001499 ORTHO05D001560 4.0e-31 138.7 145 55.2
Sc13g0001640 Simmondsia chinensis HOM05D001499 ORTHO05D001560 4.0e-31 138.7 143 55.2
FAN05G4798 Fragaria x ananassa HOM05D001499 ORTHO05D001560 5.3e-31 138.3 143 53.1
Glyma.10G113100 Glycine max HOM05D001499 ORTHO05D001560 6.9e-31 137.9 143 55.9
Phvul.007G251800 Phaseolus vulgaris HOM05D001499 ORTHO05D001560 9.0e-31 137.5 143 55.9
Sopen04g008040 Solanum pennellii HOM05D001499 ORTHO05D001560 9.0e-31 137.5 143 55.9
VMungo0720G2024 Vigna mungo HOM05D001499 ORTHO05D001560 9.0e-31 137.5 143 58.0
AUR62024464 Chenopodium quinoa HOM05D001499 ORTHO05D001560 1.2e-30 137.1 143 52.4
AUR62026055 Chenopodium quinoa HOM05D001499 ORTHO05D001560 1.2e-30 137.1 143 53.1
unitig_26.g9049 Utricularia gibba HOM05D001499 ORTHO05D001560 1.2e-30 137.1 145 55.2
arahy.Tifrunner.gnm1.ann1.GI5ZH0 Arachis hypogaea HOM05D001499 ORTHO05D001560 1.5e-30 136.7 143 55.9
ClCG04G003420 Citrullus lanatus HOM05D001499 ORTHO05D001560 1.5e-30 136.7 143 55.9
Duzib106G0340 Durio zibethinus HOM05D001499 ORTHO05D001560 1.5e-30 136.7 143 56.6
THA.LOC104824434 Tarenaya hassleriana HOM05D001499 ORTHO05D001560 1.5e-30 136.7 143 55.2
Eucgr.A02337 Eucalyptus grandis HOM05D001499 ORTHO05D001560 2.0e-30 136.3 143 55.2
FvH4_6g24270 Fragaria vesca HOM05D001499 ORTHO05D001560 2.0e-30 136.3 143 53.1
FAN14G3970 Fragaria x ananassa HOM05D001499 ORTHO05D001560 2.0e-30 136.3 143 53.1
Prupe.7G056500 Prunus persica HOM05D001499 ORTHO05D001560 2.0e-30 136.3 143 52.4
AT2G41680 Arabidopsis thaliana HOM05D001499 ORTHO05D001560 2.6e-30 136.0 143 54.5
BcaC01g05324 Brassica carinata HOM05D001499 ORTHO05D001560 2.6e-30 136.0 143 54.5
BcaC02g12788 Brassica carinata HOM05D001499 ORTHO05D001560 2.6e-30 136.0 143 54.5
A05p02410 Brassica napus HOM05D001499 ORTHO05D001560 2.6e-30 136.0 143 54.5
C03p27880 Brassica napus HOM05D001499 ORTHO05D001560 2.6e-30 136.0 143 54.5
C04p02860 Brassica napus HOM05D001499 ORTHO05D001560 2.6e-30 136.0 143 54.5
BolC3t15159H Brassica oleracea HOM05D001499 ORTHO05D001560 2.6e-30 136.0 143 54.5
BolC4t21926H Brassica oleracea HOM05D001499 ORTHO05D001560 2.6e-30 136.0 143 54.5
BraA05t19235Z Brassica rapa HOM05D001499 ORTHO05D001560 2.6e-30 136.0 143 54.5
Carub.0004s2395 Capsella rubella HOM05D001499 ORTHO05D001560 2.6e-30 136.0 143 54.5
CARHR136760 Cardamine hirsuta HOM05D001499 ORTHO05D001560 2.6e-30 136.0 143 54.5
CsaV3_4G011840 Cucumis sativus L. HOM05D001499 ORTHO05D001560 2.6e-30 136.0 143 55.2
ECA248G2226 Erigeron canadensis HOM05D001499 ORTHO05D001560 2.6e-30 136.0 143 55.2
Lsat_1_v5_gn_8_81141 Lactuca sativa HOM05D001499 ORTHO05D001560 2.6e-30 136.0 146 53.4
Aa31LG1G23700 Aethionema arabicum HOM05D001499 ORTHO05D001560 3.4e-30 135.6 143 54.5
A03p23360 Brassica napus HOM05D001499 ORTHO05D001560 3.4e-30 135.6 141 54.6
BraA03t11553Z Brassica rapa HOM05D001499 ORTHO05D001560 3.4e-30 135.6 141 54.6
Migut.K00092 Erythranthe guttata HOM05D001499 ORTHO05D001560 3.4e-30 135.6 143 53.8
Thhalv10016520m.g Eutrema salsugineum HOM05D001499 ORTHO05D001560 3.4e-30 135.6 143 54.5
MD00G1191800 Malus domestica HOM05D001499 ORTHO05D001560 3.4e-30 135.6 145 52.4
AL4G39980 Arabidopsis lyrata HOM05D001499 ORTHO05D001560 4.5e-30 135.2 143 54.5
HanXRQChr13g0396471 Helianthus annuus HOM05D001499 ORTHO05D001560 4.5e-30 135.2 145 54.5
Sed0024523 Sechium edule HOM05D001499 ORTHO05D001560 4.5e-30 135.2 143 55.9
arahy.Tifrunner.gnm1.ann1.K81J42 Arachis hypogaea HOM05D001499 ORTHO05D001560 5.8e-30 134.8 143 55.2
EL10Ac3g07103 Beta vulgaris HOM05D001499 ORTHO05D001560 7.6e-30 134.4 148 51.4
Ca_10365_v3 Cicer arietinum L. HOM05D001499 ORTHO05D001560 7.6e-30 134.4 143 53.1
Sp4g23920 Schrenkiella parvula HOM05D001499 ORTHO05D001560 7.6e-30 134.4 143 53.8
MELO3C023105.2 Cucumis melo HOM05D001499 ORTHO05D001560 9.9e-30 134.0 143 53.8
Glyma.02G185300 Glycine max HOM05D001499 ORTHO05D001560 9.9e-30 134.0 143 55.2
Psat2g159920 Pisum sativum HOM05D001499 ORTHO05D001560 1.3e-29 133.7 143 54.5
SalBow6G6755 Salvia bowleyana HOM05D001499 ORTHO05D001560 1.3e-29 133.7 143 54.5
Hund19144 Selenicereus undatus HOM05D001499 ORTHO05D001560 1.3e-29 133.7 143 52.4
CANSAT80G2713 Cannabis sativa HOM05D001499 ORTHO05D001560 6.4e-29 131.3 143 53.1
ATR0320G039 Amborella trichopoda HOM05D001499 ORTHO05D001560 8.4e-29 131.0 143 51.0
Aqoxy2G00225 Aquilegia oxysepala HOM05D001499 ORTHO05D001560 1.4e-28 130.2 143 53.8
HPP92_025058 Vanilla planifolia HOM05D001499 ORTHO05D001560 3.2e-28 129.0 144 51.4
CDE09G1433 Ceratophyllum demersum HOM05D001499 ORTHO05D001560 5.4e-28 128.3 143 50.3
Zm00001eb329630 Zea mays HOM05D001499 ORTHO05D001560 5.4e-28 128.3 145 53.1
AagrBONN_evm.TU.Sc2ySwM_344.1124 Anthoceros agrestis HOM05D001499 ORTHO05D001560 2.7e-27 125.9 143 52.4
Sed0013588 Sechium edule HOM05D001499 ORTHO05D001560 3.5e-27 125.6 143 52.4
Mapoly0129s0051 Marchantia polymorpha HOM05D001499 ORTHO05D001560 5.1e-26 121.7 144 50.0
Pp3c20_5530 Physcomitrium patens HOM05D001499 ORTHO05D001560 1.1e-23 114.0 143 46.9
Pp3c23_21190 Physcomitrium patens HOM05D001499 ORTHO05D001560 1.8e-23 113.2 143 48.3
SGA_v2.0_scaffold94G28488 Striga asiatica HOM05D001499 ORTHO05D001560 3.1e-23 112.5 127 52.0
SMO365G0084 Selaginella moellendorffii HOM05D001499 ORTHO05D001560 2.6e-22 109.4 142 46.5
Lsat_1_v5_gn_8_81161 Lactuca sativa HOM05D001499 ORTHO05D001560 6.4e-21 104.8 126 49.2
CBR_g49843 Chara braunii HOM05D000019 ORTHO05D000002 3.2e-20 102.4 143 45.5
PGSC0003DMG402027256 Solanum tuberosum HOM05D001499 ORTHO05D001560 2.1e-19 99.8 118 52.5
Psat0s24g0120 Pisum sativum HOM05D001499 ORTHO05D001560 3.0e-18 95.9 119 50.4
SalBow6G2288 Salvia bowleyana HOM05D001499 ORTHO05D001560 4.0e-15 85.5 65 66.2
Cre01.g054150 Chlamydomonas reinhardtii HOM05D001499 ORTHO05D001560 5.5e-12 75.1 143 38.5
SEGI_03080 Sequoiadendron giganteum HOM05D001499 ORTHO05D001560 1.6e-11 73.6 65 49.2
SEGI_04518 Sequoiadendron giganteum HOM05D001499 ORTHO05D001560 1.3e-10 70.5 65 47.7
TAR633G1315 Trochodendron aralioides HOM05D001499 ORTHO05D001560 8.7e-10 67.8 36 91.7
CSS0029731 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D016851 3.3e-09 65.9 39 79.5
CSS0047957 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D016851 5.7e-09 65.1 39 76.9
Psat5g198000 Pisum sativum HOM05D001499 ORTHO05D016851 9.7e-09 64.3 143 36.4
CSS0016411 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D016851 1.3e-08 63.9 39 76.9
CSS0041606 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D016851 1.3e-08 63.9 39 76.9
CSS0012974 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D016851 1.6e-08 63.5 40 77.5
CSS0017141 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D016851 1.6e-08 63.5 37 83.8
QL07p001098 Quercus lobata HOM05D000009 ORTHO05D000008 3.7e-08 62.4 36 77.8
QL07p001252 Quercus lobata HOM05D001499 ORTHO05D001560 3.7e-08 62.4 36 77.8
CSS0025031 Camellia sinensis var. sinensis HOM05D001499 ORTHO05D016851 4.8e-08 62.0 39 74.4
SGA_v2.0_scaffold48G18077 Striga asiatica HOM05D001499 ORTHO05D016851 4.8e-08 62.0 36 77.8
MD12G1076800 Malus domestica HOM05D001499 ORTHO05D001560 1.4e-07 60.5 36 75.0
Oeu051523.1 Olea europaea HOM05D001499 ORTHO05D001560 1.4e-07 60.5 50 60.0
Psat5g197880 Pisum sativum HOM05D001499 ORTHO05D001560 2.0e-06 56.6 35 74.3
SMO351G0362 Selaginella moellendorffii HOM05D001499 ORTHO05D001560 2.0e-06 56.6 133 30.8
Pp3c8_10210 Physcomitrium patens HOM05D001499 ORTHO05D001560 2.6e-06 56.2 134 32.1
Pp3c8_10250 Physcomitrium patens HOM05D001499 ORTHO05D001560 2.6e-06 56.2 134 32.1
MD02G1108200 Malus domestica HOM05D001499 ORTHO05D001560 4.5e-06 55.5 136 34.6
AagrBONN_evm.TU.Sc2ySwM_117.3542 Anthoceros agrestis HOM05D001499 ORTHO05D001560 5.9e-06 55.1 131 32.1
DCAR_016698 Daucus carota HOM05D001499 ORTHO05D001560 5.9e-06 55.1 131 33.6
HPP92_017803 Vanilla planifolia HOM05D001499 ORTHO05D001560 5.9e-06 55.1 136 33.8
FvH4_1g09960 Fragaria vesca HOM05D001499 ORTHO05D001560 7.7e-06 54.7 131 32.8
FAN19G2215 Fragaria x ananassa HOM05D001499 ORTHO05D001560 7.7e-06 54.7 131 32.8
FAN28G0276 Fragaria x ananassa HOM05D001499 ORTHO05D001560 7.7e-06 54.7 131 32.8
MD15G1227600 Malus domestica HOM05D001499 ORTHO05D001560 1.0e-05 54.3 130 33.1


User provided reference genes

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