Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004765 Camellia sinensis var. sinensis HOM05D000685 ORTHO05D043351 5.3e-37 157.1 78 100.0
Actinidia15061 Actinidia chinensis HOM05D000218 ORTHO05D000125 7.5e-15 83.6 62 72.6
Actinidia13497 Actinidia chinensis HOM05D000685 ORTHO05D000511 3.7e-14 81.3 61 72.1
GSVIVG01013778001 Vitis vinifera HOM05D000685 ORTHO05D000511 8.3e-14 80.1 59 67.8
vmacro16223 Vaccinium macrocarpon HOM05D000685 ORTHO05D000511 2.4e-13 78.6 73 60.3
vmacro16226 Vaccinium macrocarpon HOM05D000685 ORTHO05D000511 9.2e-13 76.6 68 61.8
CiPaw.05G186200 Carya illinoinensis HOM05D000685 ORTHO05D000511 1.6e-12 75.9 59 66.1
Hma1.2p1_0223F.1_g094360 Hydrangea macrophylla HOM05D000685 ORTHO05D000511 2.0e-12 75.5 59 67.8
Dinv15272 Davidia involucrata HOM05D000685 ORTHO05D000511 2.9e-11 71.6 63 60.3
MD13G1094900 Malus domestica HOM05D000685 ORTHO05D000511 8.6e-11 70.1 61 63.9
Medtr5g034030 Medicago truncatula HOM05D000685 ORTHO05D000511 1.2e-09 66.2 63 47.6
Prupe.1G250500 Prunus persica HOM05D000685 ORTHO05D000511 1.2e-09 66.2 74 52.7
QL03p059337 Quercus lobata HOM05D000685 ORTHO05D000511 2.1e-09 65.5 57 57.9
Cpa.g.sc69.72 Carica papaya HOM05D000685 ORTHO05D000511 3.6e-09 64.7 60 58.3
HanXRQChr17g0539491 Helianthus annuus HOM05D000685 ORTHO05D000511 4.7e-09 64.3 62 53.2
Cfa009176 Carpinus fangiana HOM05D000685 ORTHO05D000511 6.2e-09 63.9 56 58.9
MD16G1096000 Malus domestica HOM05D000685 ORTHO05D000511 6.2e-09 63.9 61 59.0
Psat2g105360 Pisum sativum HOM05D000685 ORTHO05D000511 6.2e-09 63.9 64 53.1
Potri.010G042400 Populus trichocarpa HOM05D000685 ORTHO05D000511 6.2e-09 63.9 57 59.6
PGR102G2253 Punica granatum HOM05D000685 ORTHO05D000511 6.2e-09 63.9 49 63.3
TPR.G21090 Trifolium pratense HOM05D000685 ORTHO05D000511 6.2e-09 63.9 63 50.8
Ca_03142_v3 Cicer arietinum L. HOM05D000685 ORTHO05D000511 8.0e-09 63.5 61 55.7
Sabra10G0025000 Salix brachista HOM05D000685 ORTHO05D000511 1.4e-08 62.8 57 56.1
Haze_12210 Corylus avellana HOM05D000685 ORTHO05D000511 1.8e-08 62.4 54 61.1
Psat2g104480 Pisum sativum HOM05D000685 ORTHO05D000511 1.8e-08 62.4 64 51.6
Phvul.002G069700 Phaseolus vulgaris HOM05D000685 ORTHO05D000511 3.1e-08 61.6 63 54.0
Rhsim12G0114400 Rhododendron simsii HOM05D000685 ORTHO05D043351 3.1e-08 61.6 70 55.7
Manes.13G028200 Manihot esculenta HOM05D000685 ORTHO05D000511 4.0e-08 61.2 61 54.1
Glyma.01G029300 Glycine max HOM05D000685 ORTHO05D000511 5.2e-08 60.8 61 52.5
Glyma.04G094800 Glycine max HOM05D000685 ORTHO05D000511 5.2e-08 60.8 64 54.7
VMungo1215G2676 Vigna mungo HOM05D000685 ORTHO05D000511 5.2e-08 60.8 63 52.4
Glyma.06G096500 Glycine max HOM05D000685 ORTHO05D000511 6.8e-08 60.5 64 53.1
Manes.12G026501 Manihot esculenta HOM05D000685 ORTHO05D000511 6.8e-08 60.5 61 52.5
Atru.chr11.2062 Acer truncatum HOM05D000685 ORTHO05D000511 1.2e-07 59.7 65 53.8
AT1G23420 Arabidopsis thaliana HOM05D000685 ORTHO05D000511 1.2e-07 59.7 76 47.4
CSS0034551 Camellia sinensis var. sinensis HOM05D000685 ORTHO05D000511 1.2e-07 59.7 65 56.9
AL1G37210 Arabidopsis lyrata HOM05D000685 ORTHO05D000511 1.5e-07 59.3 55 56.4
Ciclev10033714m.g Citrus clementina HOM05D000685 ORTHO05D000511 1.5e-07 59.3 65 52.3
Gohir.A01G162500 Gossypium hirsutum HOM05D000685 ORTHO05D000511 1.5e-07 59.3 65 53.8
Lj2g0026083 Lotus japonicus HOM05D000685 ORTHO05D000511 1.5e-07 59.3 61 49.2
Oeu055459.1 Olea europaea HOM05D000685 ORTHO05D000511 1.5e-07 59.3 62 53.2
CANSAT01G1163 Cannabis sativa HOM05D000685 ORTHO05D000511 2.0e-07 58.9 60 56.7
FvH4_4g32910 Fragaria vesca HOM05D000685 ORTHO05D000511 2.0e-07 58.9 48 64.6
FAN12G1546 Fragaria x ananassa HOM05D000685 ORTHO05D000511 2.0e-07 58.9 48 64.6
FAN17G1188 Fragaria x ananassa HOM05D000685 ORTHO05D000511 2.0e-07 58.9 48 64.6
FAN22G0463 Fragaria x ananassa HOM05D000685 ORTHO05D000511 2.0e-07 58.9 86 44.2
COL.COLO4_24210 Corchorus olitorius HOM05D000685 ORTHO05D000511 2.6e-07 58.5 68 51.5
FAN07G1619 Fragaria x ananassa HOM05D000685 ORTHO05D000511 3.4e-07 58.2 48 64.6
Carub.0001s2300 Capsella rubella HOM05D000685 ORTHO05D000511 5.8e-07 57.4 59 52.5
CARHR023860 Cardamine hirsuta HOM05D000685 ORTHO05D000511 5.8e-07 57.4 54 55.6
Solyc05g005240.2 Solanum lycopersicum HOM05D000685 ORTHO05D000511 5.8e-07 57.4 59 49.2
Gohir.D01G149800 Gossypium hirsutum HOM05D000685 ORTHO05D000511 7.5e-07 57.0 61 54.1
Gorai.002G185900 Gossypium raimondii HOM05D000685 ORTHO05D000511 7.5e-07 57.0 61 54.1
THA.LOC104809005 Tarenaya hassleriana HOM05D000685 ORTHO05D000511 7.5e-07 57.0 60 48.3
THA.LOC104823086 Tarenaya hassleriana HOM05D000685 ORTHO05D000511 7.5e-07 57.0 54 51.9
Thecc.02G254000 Theobroma cacao HOM05D000685 ORTHO05D000511 7.5e-07 57.0 62 50.0
Duzib119G0003 Durio zibethinus HOM05D000685 ORTHO05D000511 9.8e-07 56.6 61 47.5
Duzib251G0960 Durio zibethinus HOM05D000685 ORTHO05D000511 9.8e-07 56.6 61 47.5
Potri.008G189000 Populus trichocarpa HOM05D000685 ORTHO05D000511 9.8e-07 56.6 53 49.1
Thhalv10008669m.g Eutrema salsugineum HOM05D000685 ORTHO05D000511 1.3e-06 56.2 68 48.5
RcHm_v2.0_Chr4g0441941 Rosa chinensis HOM05D000685 ORTHO05D000511 1.3e-06 56.2 46 63.0
Sopen05g001250 Solanum pennellii HOM05D000685 ORTHO05D000511 1.3e-06 56.2 55 50.9
Eucgr.B03310 Eucalyptus grandis HOM05D000685 ORTHO05D000511 2.9e-06 55.1 70 50.0
Nitab4.5_0000203g0270 Nicotiana tabacum HOM05D000685 ORTHO05D000511 2.9e-06 55.1 65 47.7
Nitab4.5_0001873g0060 Nicotiana tabacum HOM05D000685 ORTHO05D000511 2.9e-06 55.1 65 47.7
A09p41200 Brassica napus HOM05D000685 ORTHO05D000511 4.9e-06 54.3 57 50.9
PSO063G7001 Papaver somniferum HOM05D000685 ORTHO05D000511 4.9e-06 54.3 60 50.0
PSO832G0324 Papaver somniferum HOM05D000685 ORTHO05D000511 4.9e-06 54.3 60 50.0
BcaB03g14149 Brassica carinata HOM05D002820 ORTHO05D003176 6.4e-06 53.9 57 50.9
Sp1g20860 Schrenkiella parvula HOM05D000685 ORTHO05D000511 6.4e-06 53.9 57 50.9
BcaC05g26261 Brassica carinata HOM05D000685 ORTHO05D000511 8.3e-06 53.5 57 50.9
C05p22720 Brassica napus HOM05D000685 ORTHO05D000511 8.3e-06 53.5 57 50.9
BolC5t30970H Brassica oleracea HOM05D000685 ORTHO05D000511 8.3e-06 53.5 57 50.9
BraA09t39616Z Brassica rapa HOM05D000685 ORTHO05D000511 8.3e-06 53.5 57 50.9


User provided reference genes

Program Settings