Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004737 Camellia sinensis var. sinensis HOM05D005021 ORTHO05D006824 0.0e+00 2755.3 1387 100.0
Dinv25918 Davidia involucrata HOM05D005021 ORTHO05D006824 0.0e+00 2523.0 1389 91.2
COL.COLO4_17653 Corchorus olitorius HOM05D005021 ORTHO05D006824 0.0e+00 2415.6 1390 86.8
Prupe.4G113100 Prunus persica HOM05D005021 ORTHO05D006824 0.0e+00 2406.3 1390 86.5
Cc09_g06010 Coffea canephora HOM05D005021 ORTHO05D006824 0.0e+00 2400.2 1389 86.5
Gorai.002G164100 Gossypium raimondii HOM05D005021 ORTHO05D006824 0.0e+00 2399.8 1392 86.4
Gohir.A01G141263 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2399.4 1392 86.4
GSVIVG01012103001 Vitis vinifera HOM05D005021 ORTHO05D006824 0.0e+00 2398.2 1395 86.3
Cfa000703 Carpinus fangiana HOM05D005021 ORTHO05D006824 0.0e+00 2397.1 1388 85.6
Sabra12G0094200 Salix brachista HOM05D005021 ORTHO05D006824 0.0e+00 2394.8 1391 86.3
Thecc.02G008800 Theobroma cacao HOM05D005021 ORTHO05D006824 0.0e+00 2394.0 1390 86.5
RcHm_v2.0_Chr5g0020301 Rosa chinensis HOM05D005021 ORTHO05D006824 0.0e+00 2392.8 1389 86.1
QL11p016313 Quercus lobata HOM05D005021 ORTHO05D006824 0.0e+00 2391.7 1389 86.2
Gohir.D01G132500 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2387.8 1392 86.1
Potri.012G124400 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2387.8 1391 85.8
Atru.chr10.559 Acer truncatum HOM05D005021 ORTHO05D006824 0.0e+00 2380.5 1389 85.2
CiPaw.10G064100 Carya illinoinensis HOM05D005021 ORTHO05D006824 0.0e+00 2370.9 1389 84.7
FvH4_3g12410 Fragaria vesca HOM05D005021 ORTHO05D006824 0.0e+00 2370.1 1390 85.5
TAR626G1325 Trochodendron aralioides HOM05D005021 ORTHO05D006824 0.0e+00 2368.6 1389 85.4
MD10G1231300 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2367.4 1390 85.7
Ciclev10014047m.g Citrus clementina HOM05D005021 ORTHO05D006824 0.0e+00 2367.0 1389 85.0
CANSAT35G0082 Cannabis sativa HOM05D005021 ORTHO05D006824 0.0e+00 2363.2 1390 85.0
Solyc02g068720.3 Solanum lycopersicum HOM05D005021 ORTHO05D006824 0.0e+00 2362.4 1390 84.0
Sopen02g017890 Solanum pennellii HOM05D005021 ORTHO05D006824 0.0e+00 2361.6 1390 84.2
Nitab4.5_0001288g0150 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2355.5 1389 84.4
Migut.M01986 Erythranthe guttata HOM05D005021 ORTHO05D006824 0.0e+00 2353.2 1395 85.1
MD05G1250500 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2348.9 1390 85.0
HanXRQChr14g0447451 Helianthus annuus HOM05D005021 ORTHO05D006824 0.0e+00 2348.2 1389 84.9
DCAR_003775 Daucus carota HOM05D005021 ORTHO05D006824 0.0e+00 2343.9 1390 84.5
Nitab4.5_0007745g0040 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2343.5 1401 83.7
Eucgr.D00052 Eucalyptus grandis HOM05D005021 ORTHO05D006824 0.0e+00 2341.2 1389 84.0
CAN.G149.8 Capsicum annuum HOM05D005021 ORTHO05D006824 0.0e+00 2338.1 1402 82.8
TWI38G0923 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2337.8 1389 83.9
ECA238G3003 Erigeron canadensis HOM05D005021 ORTHO05D006824 0.0e+00 2335.1 1390 84.9
TWI38G0776 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2334.7 1389 83.9
Glyma.20G019300 Glycine max HOM05D005021 ORTHO05D006824 0.0e+00 2332.4 1392 82.9
FAN21G1452 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2326.6 1390 84.2
Phvul.002G097500 Phaseolus vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 2326.2 1392 83.0
Nn7g38248 Nelumbo nucifera HOM05D005021 ORTHO05D006824 0.0e+00 2325.4 1425 83.0
Oeu060353.1 Olea europaea HOM05D005021 ORTHO05D006824 0.0e+00 2325.1 1414 82.5
Duzib248G0067 Durio zibethinus HOM05D005021 ORTHO05D006824 0.0e+00 2323.9 1348 86.3
Cpa.g.sc30.159 Carica papaya HOM05D005021 ORTHO05D006824 0.0e+00 2323.1 1401 83.3
Haze_06074 Corylus avellana HOM05D005021 ORTHO05D006824 0.0e+00 2320.4 1432 81.9
Psat7g129680 Pisum sativum HOM05D005021 ORTHO05D006824 0.0e+00 2311.2 1392 82.3
Ca_18756_v3 Cicer arietinum L. HOM05D005021 ORTHO05D006824 0.0e+00 2310.0 1392 82.4
Lj4g0005220 Lotus japonicus HOM05D005021 ORTHO05D006824 0.0e+00 2304.6 1394 82.2
TPR.G38288 Trifolium pratense HOM05D005021 ORTHO05D006824 0.0e+00 2296.5 1392 81.8
Medtr4g084140 Medicago truncatula HOM05D005021 ORTHO05D006824 0.0e+00 2296.2 1394 81.7
ClCG01G009560 Citrullus lanatus HOM05D005021 ORTHO05D006824 0.0e+00 2290.8 1389 82.0
arahy.Tifrunner.gnm1.ann1.79RC6W Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2289.2 1483 78.0
SalBow8G3018 Salvia bowleyana HOM05D005021 ORTHO05D006824 0.0e+00 2287.7 1399 82.4
Potri.015G124500 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2285.8 1391 83.2
CsaV3_1G046230 Cucumis sativus L. HOM05D005021 ORTHO05D006824 0.0e+00 2280.8 1389 81.9
FAN25G1951 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2278.4 1406 82.4
MELO3C021737.2 Cucumis melo HOM05D005021 ORTHO05D006824 0.0e+00 2277.7 1390 81.9
Lj1A1146G59 Lonicera japonica HOM05D005021 ORTHO05D006824 0.0e+00 2273.4 1417 82.9
Lalb_Chr16g0385181 Lupinus albus HOM05D005021 ORTHO05D006824 0.0e+00 2271.1 1393 81.0
Sed0001856 Sechium edule HOM05D005021 ORTHO05D006824 0.0e+00 2263.0 1389 81.8
vmacro03526 Vaccinium macrocarpon HOM05D005021 ORTHO05D006824 0.0e+00 2261.1 1698 71.4
PGR004G0612 Punica granatum HOM05D005021 ORTHO05D006824 0.0e+00 2256.9 1382 82.4
Aqoxy1G01424 Aquilegia oxysepala HOM05D005021 ORTHO05D006824 0.0e+00 2239.2 1390 81.2
arahy.Tifrunner.gnm1.ann1.59QZXR Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2225.3 1486 76.2
Hma1.2p1_1005F.1_g246940 Hydrangea macrophylla HOM05D005021 ORTHO05D006824 0.0e+00 2222.6 1223 90.0
Carub.0004s1679 Capsella rubella HOM05D005021 ORTHO05D006824 0.0e+00 2215.7 1406 79.7
PSO675G8902 Papaver somniferum HOM05D005021 ORTHO05D006824 0.0e+00 2215.3 1389 79.8
AL4G31120 Arabidopsis lyrata HOM05D005021 ORTHO05D006824 0.0e+00 2209.1 1403 79.5
BcaB02g09478 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2207.9 1403 79.3
Aa31LG9G16120 Aethionema arabicum HOM05D005021 ORTHO05D006824 0.0e+00 2207.2 1419 78.2
THA.LOC104798554 Tarenaya hassleriana HOM05D005021 ORTHO05D006824 0.0e+00 2204.9 1397 79.1
BolC4t22962H Brassica oleracea HOM05D005021 ORTHO05D006824 0.0e+00 2204.5 1403 79.1
A05p10630 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2204.1 1402 79.3
Thhalv10016146m.g Eutrema salsugineum HOM05D005021 ORTHO05D006824 0.0e+00 2204.1 1403 79.0
BraA05t20004Z Brassica rapa HOM05D005021 ORTHO05D006824 0.0e+00 2200.6 1403 79.1
C04p13730 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2196.4 1403 78.8
Manes.16G055900 Manihot esculenta HOM05D005021 ORTHO05D006824 0.0e+00 2183.7 1254 86.9
BcaB02g09480 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2174.8 1413 78.3
RhsimUnG0043400 Rhododendron simsii HOM05D005021 ORTHO05D006824 0.0e+00 2169.0 1303 84.8
AT2G35110 Arabidopsis thaliana HOM05D005021 ORTHO05D006824 0.0e+00 2158.6 1368 79.4
Hund09140 Selenicereus undatus HOM05D005021 ORTHO05D006824 0.0e+00 2057.7 1351 76.8
AUR62037395 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 2053.9 1354 76.2
AUR62041742 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 2053.9 1347 76.5
SGA_v2.0_scaffold175G39355 Striga asiatica HOM05D005021 ORTHO05D006824 0.0e+00 2015.0 1380 76.2
unitig_748.g8077 Utricularia gibba HOM05D005021 ORTHO05D006824 0.0e+00 2000.7 1331 76.0
EL10Ac9g20953 Beta vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 1991.9 1400 73.1
Os08g0544500 Oryza sativa ssp. japonica HOM05D005021 ORTHO05D006824 0.0e+00 1961.8 1376 71.5
Sc17g0003700 Simmondsia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1956.0 1190 80.7
Zm00001eb405230 Zea mays HOM05D005021 ORTHO05D006824 0.0e+00 1918.3 1372 71.1
ATR0752G031 Amborella trichopoda HOM05D005021 ORTHO05D006824 0.0e+00 1878.2 1362 69.0
Ah.01g015830 Amaranthus hybridus HOM05D005021 ORTHO05D006824 0.0e+00 1807.0 1531 62.8
Peaxi162Scf00149g00312 Petunia axillaris HOM05D005021 ORTHO05D006824 0.0e+00 1576.6 931 84.0
CDE05G3601 Ceratophyllum demersum HOM05D005021 ORTHO05D006824 0.0e+00 1492.2 1154 64.7
Lsat_1_v5_gn_2_63641 Lactuca sativa HOM05D005021 ORTHO05D006824 0.0e+00 1457.2 978 77.0
Mapoly0087s0075 Marchantia polymorpha HOM05D005021 ORTHO05D006824 0.0e+00 1439.1 1387 53.5
Sp4g17340 Schrenkiella parvula HOM05D005021 ORTHO05D006824 0.0e+00 1413.3 822 85.8
Pp3c11_1080 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1374.4 1348 52.0
SMO367G0195 Selaginella moellendorffii HOM05D005021 ORTHO05D006824 0.0e+00 1367.1 1337 51.5
Pp3c1_6150 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1361.3 1358 50.7
Actinidia33677 Actinidia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1271.9 792 83.1
FAN16G3288 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 1261.1 716 88.3
VMungo0251G0795 Vigna mungo HOM05D005021 ORTHO05D006824 0.0e+00 1221.5 762 79.9
HPP92_017169 Vanilla planifolia HOM05D005021 ORTHO05D006824 0.0e+00 1220.3 882 68.4
CARHR129260 Cardamine hirsuta HOM05D005021 ORTHO05D006824 0.0e+00 1213.7 815 75.0
VMungo0251G3115 Vigna mungo HOM05D005021 ORTHO05D006824 5.0e-295 1018.5 589 85.4
AagrBONN_evm.TU.Sc2ySwM_344.1422 Anthoceros agrestis HOM05D005021 ORTHO05D006824 2.1e-285 986.5 814 59.1
Potri.015G123900 Populus trichocarpa HOM05D005021 ORTHO05D006824 6.0e-264 915.2 601 77.2
Oeu060352.1 Olea europaea HOM05D005021 ORTHO05D006824 1.8e-220 770.8 485 80.6
QL11p016288 Quercus lobata HOM05D005021 ORTHO05D006824 3.4e-219 766.5 514 75.5
SHI31491 Sapria himalayana HOM05D005021 ORTHO05D006824 1.7e-194 684.5 529 65.4
CBR_g30692 Chara braunii HOM05D005021 ORTHO05D006824 1.0e-186 658.7 1482 30.0
BcaNung06473 Brassica carinata HOM05D005021 ORTHO05D006824 1.3e-162 578.6 531 60.3
HPP92_017178 Vanilla planifolia HOM05D005021 ORTHO05D006824 7.0e-148 529.6 366 71.9
SEGI_39898 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 2.3e-143 514.6 531 52.5
Medtr4g081610 Medicago truncatula HOM05D005021 ORTHO05D006824 1.5e-126 458.8 541 50.6
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 1.9e-105 388.7 275 70.5
Psat0s2371g0040 Pisum sativum HOM05D000434 ORTHO05D006824 1.2e-94 352.8 221 76.9
Medtr4g081600 Medicago truncatula HOM05D005021 ORTHO05D006824 1.0e-90 339.7 421 47.0
SEGI_00319 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 1.3e-88 332.8 192 82.3
Sp2g07020 Schrenkiella parvula HOM05D005021 ORTHO05D006824 1.4e-71 276.2 299 50.5
HPP92_017177 Vanilla planifolia HOM05D005021 ORTHO05D006824 1.7e-64 252.7 147 83.7
Psat0s5010g0040 Pisum sativum HOM05D005021 ORTHO05D004273 2.2e-53 215.7 139 77.0
SEGI_02164 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 5.0e-45 188.0 128 68.0
Potri.015G124200 Populus trichocarpa HOM05D005021 ORTHO05D006824 8.0e-43 180.6 134 73.9
Oeu003620.1 Olea europaea HOM05D005021 ORTHO05D006824 8.3e-40 170.6 116 75.9
SEGI_41047 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 1.6e-35 156.4 143 51.0
Actinidia33676 Actinidia chinensis HOM05D005021 ORTHO05D006824 2.3e-34 152.5 94 84.0
BcaB07g31175 Brassica carinata HOM05D005021 ORTHO05D006824 4.0e-34 151.8 89 77.5
GSVIVG01004787001 Vitis vinifera HOM05D000908 ORTHO05D000789 4.1e-31 141.7 83 78.3
SHI31497 Sapria himalayana HOM05D005021 ORTHO05D006824 1.0e-29 137.1 112 61.6
QL05p044008 Quercus lobata HOM05D005021 ORTHO05D006824 1.3e-29 136.7 83 80.7
SGA_v2.0_scaffold88G27325 Striga asiatica HOM05D005021 ORTHO05D006824 1.7e-29 136.3 103 63.1
MBI13_g07384_MAGBIO Magnolia biondii HOM05D005021 ORTHO05D018021 9.5e-28 130.6 101 69.3
Oeu048766.1 Olea europaea HOM05D001727 ORTHO05D001758 4.7e-27 128.3 86 74.4
Lsat_1_v5_gn_6_73941 Lactuca sativa HOM05D005021 ORTHO05D020826 2.3e-26 125.9 153 51.6
Lsat_1_v5_gn_3_96441 Lactuca sativa HOM05D005021 ORTHO05D020826 7.5e-25 120.9 239 38.1
Zm00001eb290420 Zea mays HOM05D005021 ORTHO05D006824 1.9e-23 116.3 98 53.1
SHI31495 Sapria himalayana HOM05D005021 ORTHO05D006824 5.1e-21 108.2 173 39.3
HPP92_017168 Vanilla planifolia HOM05D005021 ORTHO05D006824 5.1e-21 108.2 68 80.9
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 5.6e-20 104.8 127 47.2
Zm00001eb404970 Zea mays HOM05D005021 ORTHO05D006824 3.1e-18 99.0 111 53.2
Psat5g003360 Pisum sativum HOM05D005021 ORTHO05D006824 2.0e-17 96.3 89 51.7
Oeu008861.1 Olea europaea HOM05D005021 ORTHO05D006824 5.8e-17 94.7 52 90.4
Potri.015G123001 Populus trichocarpa HOM05D005021 ORTHO05D006824 7.6e-17 94.4 53 86.8
SEGI_05203 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 1.9e-15 89.7 50 92.0
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 2.5e-12 79.3 63 66.7
Lsat_1_v5_gn_2_58240 Lactuca sativa HOM05D003297 ORTHO05D020826 3.6e-11 75.5 42 90.5
Psat0s659g0040 Pisum sativum HOM05D005021 ORTHO05D023083 5.2e-10 71.6 106 41.5
Psat1g136920 Pisum sativum HOM05D005021 ORTHO05D023083 2.0e-09 69.7 56 58.9
Psat2g014320 Pisum sativum HOM05D005021 ORTHO05D023083 2.0e-09 69.7 56 58.9
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 3.8e-08 65.5 44 75.0
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 3.8e-08 65.5 44 75.0
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 3.8e-08 65.5 44 75.0
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 3.8e-08 65.5 44 75.0
Lsat_1_v5_gn_7_114520 Lactuca sativa HOM05D003846 ORTHO05D004726 3.8e-08 65.5 44 75.0
Medtr3g014450 Medicago truncatula HOM05D005021 ORTHO05D006824 1.1e-07 63.9 54 57.4
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 4.2e-07 62.0 43 72.1


User provided reference genes

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