Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004729 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 1.8e-32 142.1 77 100.0
QL05p019493 Quercus lobata HOM05D000045 ORTHO05D000611 9.0e-21 103.2 72 75.0
Dinv10450 Davidia involucrata HOM05D000045 ORTHO05D000611 3.4e-20 101.3 66 81.8
Dinv28800 Davidia involucrata HOM05D000045 ORTHO05D000611 7.6e-20 100.1 77 72.7
Thecc.01G209100 Theobroma cacao HOM05D000045 ORTHO05D000611 7.6e-20 100.1 75 76.0
FAN15G1153 Fragaria x ananassa HOM05D000045 ORTHO05D000611 1.0e-19 99.8 69 79.7
QL09p047408 Quercus lobata HOM05D000045 ORTHO05D000611 1.0e-19 99.8 72 72.2
Duzib138G0278 Durio zibethinus HOM05D000045 ORTHO05D000611 1.7e-19 99.0 72 75.0
vmacro02833 Vaccinium macrocarpon HOM05D000045 ORTHO05D000611 2.2e-19 98.6 65 83.1
Rhsim13G0054300 Rhododendron simsii HOM05D000045 ORTHO05D000611 1.1e-18 96.3 61 86.9
Prupe.8G188300 Prunus persica HOM05D000045 ORTHO05D000611 1.4e-18 95.9 66 80.3
TAR633G1868 Trochodendron aralioides HOM05D000045 ORTHO05D000611 1.4e-18 95.9 66 74.2
QL09p047197 Quercus lobata HOM05D000045 ORTHO05D000611 2.5e-18 95.1 72 72.2
FvH4_2g17601 Fragaria vesca HOM05D000045 ORTHO05D000611 4.2e-18 94.4 60 83.3
Potri.014G176500 Populus trichocarpa HOM05D000045 ORTHO05D000611 4.2e-18 94.4 59 84.7
Sabra14G0135100 Salix brachista HOM05D000045 ORTHO05D000611 5.5e-18 94.0 59 83.1
GSVIVG01001896001 Vitis vinifera HOM05D000045 ORTHO05D000611 7.2e-18 93.6 65 75.4
COL.COLO4_07043 Corchorus olitorius HOM05D000045 ORTHO05D000611 9.3e-18 93.2 60 81.7
TAR362G0617 Trochodendron aralioides HOM05D000045 ORTHO05D000611 9.3e-18 93.2 74 67.6
Gohir.D07G167500 Gossypium hirsutum HOM05D000045 ORTHO05D000611 1.6e-17 92.4 71 73.2
CiPaw.13G057700 Carya illinoinensis HOM05D000045 ORTHO05D000611 2.1e-17 92.0 60 80.0
Gohir.A07G158900 Gossypium hirsutum HOM05D000045 ORTHO05D000611 2.1e-17 92.0 69 75.4
Gorai.N002600 Gossypium raimondii HOM05D000045 ORTHO05D000611 2.1e-17 92.0 62 79.0
MD10G1149900 Malus domestica HOM05D000045 ORTHO05D000611 2.7e-17 91.7 75 70.7
QL05p019557 Quercus lobata HOM05D000003 ORTHO05D000004 2.7e-17 91.7 59 81.4
MD05G1156200 Malus domestica HOM05D000045 ORTHO05D000611 4.6e-17 90.9 69 75.4
Cpa.g.sc8.53 Carica papaya HOM05D000045 ORTHO05D000611 6.1e-17 90.5 74 66.2
RcHm_v2.0_Chr6g0282551 Rosa chinensis HOM05D000045 ORTHO05D000611 6.1e-17 90.5 69 73.9
Duzib133G0982 Durio zibethinus HOM05D000045 ORTHO05D000611 1.8e-16 89.0 67 74.6
MD05G1155500 Malus domestica HOM05D000045 ORTHO05D000611 2.3e-16 88.6 69 73.9
TWI75G1823 Tripterygium wilfordii HOM05D000045 ORTHO05D000611 3.0e-16 88.2 66 72.7
Manes.13G055700 Manihot esculenta HOM05D000045 ORTHO05D000611 6.7e-16 87.0 59 79.7
TWI18G1009 Tripterygium wilfordii HOM05D000045 ORTHO05D000611 1.5e-15 85.9 59 78.0
Nitab4.5_0005686g0010 Nicotiana tabacum HOM05D000045 ORTHO05D000611 4.3e-15 84.3 60 71.7
Sopen09g021630 Solanum pennellii HOM05D000045 ORTHO05D000611 7.4e-15 83.6 60 70.0
Nitab4.5_0000038g0280 Nicotiana tabacum HOM05D000045 ORTHO05D000611 9.7e-15 83.2 60 71.7
MELO3C028820.2 Cucumis melo HOM05D000045 ORTHO05D000611 1.3e-14 82.8 74 60.8
Peaxi162Scf00235g00216 Petunia axillaris HOM05D000045 ORTHO05D000611 1.3e-14 82.8 64 65.6
CAN.G188.1 Capsicum annuum HOM05D000045 ORTHO05D000611 3.7e-14 81.3 63 66.7
MSTRG.12747 Avicennia marina HOM05D000045 ORTHO05D000611 8.2e-14 80.1 65 64.6
Sc05g0001640 Simmondsia chinensis HOM05D000045 ORTHO05D000611 8.2e-14 80.1 65 64.6
CsaV3_7G026930 Cucumis sativus L. HOM05D000045 ORTHO05D000611 1.1e-13 79.7 74 59.5
EL10Ac5g10594 Beta vulgaris HOM05D000045 ORTHO05D000611 3.1e-13 78.2 66 62.1
ClCG09G008120 Citrullus lanatus HOM05D000045 ORTHO05D000611 5.3e-13 77.4 64 64.1
AL3G18820 Arabidopsis lyrata HOM05D000045 ORTHO05D000611 2.0e-12 75.5 57 66.7
CARHR082150 Cardamine hirsuta HOM05D000045 ORTHO05D000611 2.6e-12 75.1 57 66.7
Nn1g09619 Nelumbo nucifera HOM05D000045 ORTHO05D000611 3.4e-12 74.7 68 61.8
PGR031G0375 Punica granatum HOM05D000045 ORTHO05D000611 1.3e-11 72.8 69 56.5
A05p40710 Brassica napus HOM05D000045 ORTHO05D000611 1.7e-11 72.4 57 64.9
AT3G07500 Arabidopsis thaliana HOM05D000045 ORTHO05D000611 2.2e-11 72.0 75 53.3
BraA05t22802Z Brassica rapa HOM05D000045 ORTHO05D000611 2.2e-11 72.0 57 64.9
C05p59820 Brassica napus HOM05D000045 ORTHO05D000611 2.9e-11 71.6 57 64.9
BolC5t34636H Brassica oleracea HOM05D000045 ORTHO05D000611 2.9e-11 71.6 57 64.9
BcaC05g29540 Brassica carinata HOM05D000135 ORTHO05D000611 3.8e-11 71.2 57 63.2
Carub.0003s0704 Capsella rubella HOM05D000045 ORTHO05D000203 8.5e-11 70.1 65 56.9
BcaC05g29542 Brassica carinata HOM05D000045 ORTHO05D000611 2.5e-10 68.6 66 57.6
PSO732G0561 Papaver somniferum HOM05D000045 ORTHO05D000611 5.5e-10 67.4 54 59.3
Rhsim09G0026800 Rhododendron simsii HOM05D000045 ORTHO05D000611 1.2e-09 66.2 58 58.6
RhsimUnG0195800 Rhododendron simsii HOM05D000045 ORTHO05D000611 1.2e-09 66.2 58 58.6
Sp3g06410 Schrenkiella parvula HOM05D000045 ORTHO05D000611 2.1e-09 65.5 57 57.9
Dinv28797 Davidia involucrata HOM05D001360 ORTHO05D001231 3.6e-09 64.7 58 56.9
Lj3C186T3 Lonicera japonica HOM05D000045 ORTHO05D000611 4.6e-09 64.3 58 53.4
Aqoxy5G00013 Aquilegia oxysepala HOM05D000045 ORTHO05D000611 6.1e-09 63.9 54 57.4
Aqoxy2G04102 Aquilegia oxysepala HOM05D000045 ORTHO05D000611 7.9e-09 63.5 52 61.5
TAR362G0325 Trochodendron aralioides HOM05D000045 ORTHO05D000611 7.9e-09 63.5 58 55.2
PSO832G2638 Papaver somniferum HOM05D000045 ORTHO05D000611 1.0e-08 63.2 55 52.7
Nn1g09616 Nelumbo nucifera HOM05D000045 ORTHO05D000611 1.4e-08 62.8 62 51.6
TAR636G0656 Trochodendron aralioides HOM05D000045 ORTHO05D000611 1.4e-08 62.8 60 51.7
CSS0016444 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 1.8e-08 62.4 58 53.4
CSS0017326 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 1.8e-08 62.4 58 53.4
Cpa.g.sc9.289 Carica papaya HOM05D000045 ORTHO05D000611 1.8e-08 62.4 58 56.9
GSVIVG01010762001 Vitis vinifera HOM05D000045 ORTHO05D000611 1.8e-08 62.4 74 44.6
Aqoxy2G04096 Aquilegia oxysepala HOM05D000045 ORTHO05D000611 2.3e-08 62.0 60 53.3
PSO832G2631 Papaver somniferum HOM05D000045 ORTHO05D000611 2.3e-08 62.0 60 46.7
TAR365G0744 Trochodendron aralioides HOM05D000045 ORTHO05D000611 2.3e-08 62.0 63 54.0
Duzib268G1506 Durio zibethinus HOM05D000045 ORTHO05D000611 3.9e-08 61.2 58 51.7
Nn1g09614 Nelumbo nucifera HOM05D000045 ORTHO05D000611 3.9e-08 61.2 60 50.0
TAR636G0299 Trochodendron aralioides HOM05D000045 ORTHO05D000611 3.9e-08 61.2 62 56.5
TAR636G0377 Trochodendron aralioides HOM05D000045 ORTHO05D000611 3.9e-08 61.2 64 50.0
vmacro00618 Vaccinium macrocarpon HOM05D000045 ORTHO05D000611 5.1e-08 60.8 56 57.1
Gohir.A10G138100 Gossypium hirsutum HOM05D000045 ORTHO05D000611 6.7e-08 60.5 63 49.2
Gohir.D10G128700 Gossypium hirsutum HOM05D000045 ORTHO05D000611 6.7e-08 60.5 63 49.2
Gorai.011G142100 Gossypium raimondii HOM05D000045 ORTHO05D000611 6.7e-08 60.5 63 49.2
Prupe.1G195600 Prunus persica HOM05D000045 ORTHO05D000611 6.7e-08 60.5 64 50.0
TAR636G2070 Trochodendron aralioides HOM05D000045 ORTHO05D000611 6.7e-08 60.5 71 42.3
Ciclev10021853m.g Citrus clementina HOM05D000045 ORTHO05D000611 1.1e-07 59.7 64 50.0
Hma1.2p1_1539F.1_g289640 Hydrangea macrophylla HOM05D000045 ORTHO05D000611 1.1e-07 59.7 58 51.7
PSO210G3678 Papaver somniferum HOM05D000045 ORTHO05D000611 1.1e-07 59.7 60 45.0
TAR362G1348 Trochodendron aralioides HOM05D000045 ORTHO05D000611 1.1e-07 59.7 60 53.3
Nn7g36622 Nelumbo nucifera HOM05D000045 ORTHO05D000611 1.5e-07 59.3 63 47.6
PSO210G0918 Papaver somniferum HOM05D000045 ORTHO05D000611 1.5e-07 59.3 57 52.6
TAR636G3451 Trochodendron aralioides HOM05D000045 ORTHO05D000611 1.5e-07 59.3 58 48.3
COL.COLO4_07681 Corchorus olitorius HOM05D000045 ORTHO05D000611 2.0e-07 58.9 57 50.9
Hma1.2p1_4193F.1_g338430 Hydrangea macrophylla HOM05D000045 ORTHO05D000611 2.0e-07 58.9 58 51.7
Nn1g09625 Nelumbo nucifera HOM05D000045 ORTHO05D000611 2.0e-07 58.9 62 48.4
PSO832G3719 Papaver somniferum HOM05D000045 ORTHO05D000611 2.0e-07 58.9 56 55.4
TAR633G0558 Trochodendron aralioides HOM05D000045 ORTHO05D000611 2.6e-07 58.5 75 45.3
Atru.chr4.1190 Acer truncatum HOM05D000045 ORTHO05D000611 4.4e-07 57.8 64 48.4
Prupe.8G188600 Prunus persica HOM05D000045 ORTHO05D000611 5.7e-07 57.4 65 46.2
Rhsim01G0248100 Rhododendron simsii HOM05D000045 ORTHO05D000611 5.7e-07 57.4 73 45.2
CiPaw.01G099500 Carya illinoinensis HOM05D000045 ORTHO05D000611 7.4e-07 57.0 64 43.8
Manes.04G043300 Manihot esculenta HOM05D000045 ORTHO05D000611 7.4e-07 57.0 55 52.7
Thecc.04G178300 Theobroma cacao HOM05D000045 ORTHO05D000611 7.4e-07 57.0 57 50.9
CSS0014478 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 9.7e-07 56.6 62 48.4
CSS0029224 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 9.7e-07 56.6 62 48.4
CiPaw.01G099400 Carya illinoinensis HOM05D000045 ORTHO05D000611 9.7e-07 56.6 58 46.6
Potri.007G128900 Populus trichocarpa HOM05D000045 ORTHO05D000611 9.7e-07 56.6 58 50.0
Prupe.1G195800 Prunus persica HOM05D000045 ORTHO05D000611 9.7e-07 56.6 65 44.6
CSS0034723 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 1.3e-06 56.2 60 46.7
MD04G1041900 Malus domestica HOM05D000045 ORTHO05D000611 1.3e-06 56.2 63 44.4
MD10G1149600 Malus domestica HOM05D000045 ORTHO05D000611 1.3e-06 56.2 60 46.7
Cfa015172 Carpinus fangiana HOM05D000045 ORTHO05D000611 1.7e-06 55.8 64 43.8
Haze_01488 Corylus avellana HOM05D000045 ORTHO05D000611 1.7e-06 55.8 64 43.8
Manes.04G043100 Manihot esculenta HOM05D000045 ORTHO05D000611 1.7e-06 55.8 63 42.9
QL10p049195 Quercus lobata HOM05D000045 ORTHO05D000611 1.7e-06 55.8 63 44.4
QL10p049223 Quercus lobata HOM05D000045 ORTHO05D000611 1.7e-06 55.8 63 44.4
QL10p049227 Quercus lobata HOM05D000045 ORTHO05D000611 1.7e-06 55.8 63 44.4
Nn1g09624 Nelumbo nucifera HOM05D000045 ORTHO05D000611 2.2e-06 55.5 63 47.6
QL10p049186 Quercus lobata HOM05D000045 ORTHO05D000611 2.2e-06 55.5 58 48.3
CiPaw.13G058000 Carya illinoinensis HOM05D000045 ORTHO05D000611 2.8e-06 55.1 69 46.4
COL.COLO4_07675 Corchorus olitorius HOM05D000045 ORTHO05D000611 2.8e-06 55.1 63 44.4
Oeu058200.1 Olea europaea HOM05D000045 ORTHO05D000611 2.8e-06 55.1 70 45.7
Potri.007G128700 Populus trichocarpa HOM05D000045 ORTHO05D000611 2.8e-06 55.1 63 44.4
Prupe.1G195700 Prunus persica HOM05D000045 ORTHO05D000611 2.8e-06 55.1 63 42.9
Atru.chr4.1194 Acer truncatum HOM05D000045 ORTHO05D000611 3.7e-06 54.7 65 46.2
CSS0002913 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 3.7e-06 54.7 54 51.9
Duzib212G0671 Durio zibethinus HOM05D000045 ORTHO05D000611 3.7e-06 54.7 63 42.9
FvH4_2g17603 Fragaria vesca HOM05D000045 ORTHO05D000611 3.7e-06 54.7 63 46.0
Gohir.A10G138300 Gossypium hirsutum HOM05D000045 ORTHO05D000611 3.7e-06 54.7 56 48.2
Gohir.D10G128500 Gossypium hirsutum HOM05D000045 ORTHO05D000611 3.7e-06 54.7 56 48.2
Hma1.2p1_0161F.1_g071540 Hydrangea macrophylla HOM05D000045 ORTHO05D000611 3.7e-06 54.7 64 46.9
Manes.04G043000 Manihot esculenta HOM05D000045 ORTHO05D000611 3.7e-06 54.7 63 46.0
Thecc.04G178200 Theobroma cacao HOM05D000045 ORTHO05D000611 3.7e-06 54.7 65 43.1
vmacro02839 Vaccinium macrocarpon HOM05D000045 ORTHO05D000611 3.7e-06 54.7 60 45.0
Ciclev10021886m.g Citrus clementina HOM05D000045 ORTHO05D000611 4.8e-06 54.3 57 47.4
Haze_01501 Corylus avellana HOM05D000045 ORTHO05D000611 4.8e-06 54.3 64 42.2
Manes.12G059800 Manihot esculenta HOM05D000045 ORTHO05D000611 4.8e-06 54.3 62 48.4
Nn1g09620 Nelumbo nucifera HOM05D000045 ORTHO05D000611 4.8e-06 54.3 77 40.3
Sabra07G0105200 Salix brachista HOM05D000045 ORTHO05D000611 4.8e-06 54.3 56 48.2
GSVIVG01001898001 Vitis vinifera HOM05D000045 ORTHO05D000611 4.8e-06 54.3 62 46.8
Lj1C103T8 Lonicera japonica HOM05D000045 ORTHO05D000611 6.3e-06 53.9 70 44.3
Potri.007G128800 Populus trichocarpa HOM05D000045 ORTHO05D000611 6.3e-06 53.9 62 41.9
Sabra07G0105300 Salix brachista HOM05D000045 ORTHO05D000611 6.3e-06 53.9 62 41.9
TAR636G0033 Trochodendron aralioides HOM05D000045 ORTHO05D000611 6.3e-06 53.9 54 55.6
vmacro14691 Vaccinium macrocarpon HOM05D000045 ORTHO05D000611 6.3e-06 53.9 68 44.1
GSVIVG01010765001 Vitis vinifera HOM05D000045 ORTHO05D000611 6.3e-06 53.9 64 43.8
CSS0016925 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 8.2e-06 53.5 64 45.3
QL05p019474 Quercus lobata HOM05D000045 ORTHO05D000611 8.2e-06 53.5 62 48.4
QL09p047379 Quercus lobata HOM05D000045 ORTHO05D000611 8.2e-06 53.5 62 48.4
TAR636G1785 Trochodendron aralioides HOM05D000045 ORTHO05D000611 8.2e-06 53.5 58 43.1


User provided reference genes

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