Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 7.1e-104 380.6 186 100.0
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 2.6e-58 229.2 155 78.1
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 2.6e-58 229.2 155 78.1
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 1.0e-54 217.2 155 74.2
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 1.0e-54 217.2 155 72.9
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 1.8e-54 216.5 155 72.9
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 1.8e-54 216.5 155 72.9
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 3.0e-54 215.7 176 67.0
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 3.9e-54 215.3 158 73.4
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 5.1e-54 214.9 155 72.9
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 6.7e-54 214.5 156 69.2
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 6.7e-54 214.5 155 72.9
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 6.7e-54 214.5 155 71.6
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 6.7e-54 214.5 155 71.6
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 8.8e-54 214.2 155 71.6
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 1.1e-53 213.8 155 71.6
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 2.6e-53 212.6 155 71.6
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 2.6e-53 212.6 155 71.0
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 2.6e-53 212.6 155 71.6
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 4.4e-53 211.8 155 71.0
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 4.4e-53 211.8 155 71.6
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 4.4e-53 211.8 155 71.0
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 4.4e-53 211.8 155 71.6
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 5.7e-53 211.5 155 71.6
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 5.7e-53 211.5 155 72.3
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 7.4e-53 211.1 155 71.0
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 9.7e-53 210.7 149 73.8
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.3e-52 210.3 154 71.4
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 1.7e-52 209.9 157 68.2
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.7e-52 209.9 155 71.0
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 2.2e-52 209.5 155 69.0
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 2.2e-52 209.5 158 72.2
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 2.8e-52 209.1 149 72.5
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 2.8e-52 209.1 155 71.0
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 4.8e-52 208.4 155 70.3
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 4.8e-52 208.4 155 70.3
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 4.8e-52 208.4 155 68.4
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 6.3e-52 208.0 158 69.0
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 6.3e-52 208.0 176 63.1
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 6.3e-52 208.0 155 68.4
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 6.3e-52 208.0 156 68.6
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 8.2e-52 207.6 155 70.3
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.1e-51 207.2 155 69.7
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 1.4e-51 206.8 176 63.6
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 1.4e-51 206.8 156 68.6
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 1.4e-51 206.8 155 71.0
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 1.8e-51 206.5 155 68.4
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 2.4e-51 206.1 155 67.7
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 3.1e-51 205.7 155 69.7
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 3.1e-51 205.7 155 69.7
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 3.1e-51 205.7 155 69.7
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 3.1e-51 205.7 176 63.1
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 3.1e-51 205.7 176 62.5
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 3.1e-51 205.7 155 68.4
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 3.1e-51 205.7 170 65.9
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 4.1e-51 205.3 155 67.7
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 4.1e-51 205.3 149 72.5
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 5.3e-51 204.9 155 68.4
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 7.0e-51 204.5 149 71.8
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 7.0e-51 204.5 149 72.5
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 9.1e-51 204.1 151 68.9
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 9.1e-51 204.1 155 68.4
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 9.1e-51 204.1 155 67.7
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 9.1e-51 204.1 155 69.0
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 1.2e-50 203.8 176 63.6
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 1.2e-50 203.8 155 67.7
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 1.5e-50 203.4 155 69.0
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 1.5e-50 203.4 155 68.4
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 1.5e-50 203.4 155 67.7
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 2.0e-50 203.0 155 66.5
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 2.0e-50 203.0 176 62.5
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 2.0e-50 203.0 155 68.4
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 2.6e-50 202.6 155 67.7
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 2.6e-50 202.6 178 64.0
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 2.6e-50 202.6 155 67.1
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 3.5e-50 202.2 155 67.7
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 3.5e-50 202.2 176 62.5
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 3.5e-50 202.2 178 61.2
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 4.5e-50 201.8 176 63.1
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 5.9e-50 201.4 176 63.1
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 7.7e-50 201.1 155 66.5
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 1.3e-49 200.3 170 65.3
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 1.3e-49 200.3 149 71.1
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 1.3e-49 200.3 157 66.2
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 1.7e-49 199.9 179 60.9
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 1.7e-49 199.9 155 66.5
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 1.7e-49 199.9 155 67.7
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 2.2e-49 199.5 155 65.8
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 3.8e-49 198.7 155 67.1
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 3.8e-49 198.7 155 65.8
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 5.0e-49 198.4 179 60.3
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 5.0e-49 198.4 176 61.4
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 1.1e-48 197.2 176 61.4
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 2.5e-48 196.1 155 67.7
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 2.5e-48 196.1 155 65.2
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 3.2e-48 195.7 150 68.7
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 3.2e-48 195.7 150 68.7
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 4.2e-48 195.3 155 66.5
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 5.5e-48 194.9 149 68.5
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 9.4e-48 194.1 155 65.8
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 1.6e-47 193.4 155 64.5
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 1.6e-47 193.4 155 64.5
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 2.7e-47 192.6 175 59.4
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 2.7e-47 192.6 155 65.8
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 6.1e-47 191.4 155 65.2
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 8.0e-47 191.0 155 65.2
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 1.8e-46 189.9 149 65.1
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 2.3e-46 189.5 152 65.1
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 2.3e-46 189.5 175 60.0
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 2.0e-45 186.4 160 61.9
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 5.7e-45 184.9 165 60.6
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 5.7e-45 184.9 175 58.3
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 9.7e-45 184.1 153 64.1
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 1.3e-44 183.7 158 60.1
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 8.2e-44 181.0 180 56.7
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 1.1e-43 180.6 158 62.0
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 8.5e-41 171.0 154 58.4
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 1.9e-40 169.9 159 58.5
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.9e-40 169.9 176 56.8
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 4.2e-40 168.7 128 70.3
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 9.4e-40 167.5 133 68.4
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 9.7e-37 157.5 169 57.4
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 1.3e-36 157.1 133 62.4
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 4.1e-35 152.1 150 50.7
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 3.2e-32 142.5 154 47.4
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 2.3e-30 136.3 135 53.3
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 5.7e-29 131.7 142 52.1
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 2.2e-28 129.8 89 69.7
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 2.4e-27 126.3 100 64.0
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 3.1e-27 125.9 139 53.2
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 5.4e-27 125.2 86 70.9
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 9.1e-27 124.4 106 62.3
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.0e-26 123.2 92 69.6
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 7.7e-26 121.3 133 54.1
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 1.7e-25 120.2 150 42.7
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.9e-24 116.7 133 52.6
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 4.2e-24 115.5 92 63.0
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 6.1e-23 111.7 94 61.7
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.4e-22 110.5 85 67.1
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 7.5e-21 104.8 84 63.1
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 6.3e-20 101.7 65 78.5
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 5.4e-19 98.6 136 47.1
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 7.8e-18 94.7 162 40.1
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 7.3e-16 88.2 50 82.0
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.1e-15 86.7 94 50.0
C02p40370 Brassica napus HOM05D000848 ORTHO05D000007 6.8e-14 81.6 65 61.5
BolC2t10071H Brassica oleracea HOM05D005297 ORTHO05D000007 2.9e-12 76.3 58 65.5
Psat2g121320 Pisum sativum HOM05D005297 ORTHO05D006545 6.4e-12 75.1 55 63.6
Oeu046141.1 Olea europaea HOM05D005297 ORTHO05D006545 3.5e-10 69.3 44 72.7


User provided reference genes

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