Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004701 Camellia sinensis var. sinensis HOM05D007573 ORTHO05D009938 3.4e-55 218.0 105 100.0
Dinv04316 Davidia involucrata HOM05D007573 ORTHO05D009938 1.8e-19 99.4 59 81.4
TAR626G0043 Trochodendron aralioides HOM05D007573 ORTHO05D009938 5.2e-19 97.8 59 79.7
Dinv08308 Davidia involucrata HOM05D007573 ORTHO05D009938 1.5e-18 96.3 57 75.4
Cpa.g.sc80.44 Carica papaya HOM05D007573 ORTHO05D009938 4.4e-18 94.7 59 74.6
VMungo1383G0060 Vigna mungo HOM05D007573 ORTHO05D009938 4.4e-18 94.7 59 76.3
Phvul.011G213100 Phaseolus vulgaris HOM05D007573 ORTHO05D009938 1.3e-17 93.2 59 74.6
CiPaw.12G120200 Carya illinoinensis HOM05D007573 ORTHO05D009938 1.7e-17 92.8 59 71.2
Hma1.2p1_0540F.1_g174720 Hydrangea macrophylla HOM05D007573 ORTHO05D009938 1.7e-17 92.8 59 71.2
Hma1.2p1_0540F.1_g174725 Hydrangea macrophylla HOM05D007573 ORTHO05D009938 1.7e-17 92.8 59 71.2
Aa31LG8G2630 Aethionema arabicum HOM05D007573 ORTHO05D009938 4.8e-17 91.3 52 78.8
Haze_09458 Corylus avellana HOM05D007573 ORTHO05D009938 8.3e-17 90.5 48 87.5
Glyma.06G246700 Glycine max HOM05D007573 ORTHO05D009938 8.3e-17 90.5 59 69.5
Glyma.12G150700 Glycine max HOM05D007573 ORTHO05D009938 8.3e-17 90.5 59 71.2
Nn8g41073 Nelumbo nucifera HOM05D007573 ORTHO05D009938 8.3e-17 90.5 56 76.8
Manes.03G112266 Manihot esculenta HOM05D007573 ORTHO05D009938 1.1e-16 90.1 55 76.4
Sed0027924 Sechium edule HOM05D007573 ORTHO05D009938 1.1e-16 90.1 55 78.2
A03p39300 Brassica napus HOM05D007573 ORTHO05D009938 1.4e-16 89.7 72 62.5
C03p47670 Brassica napus HOM05D007573 ORTHO05D009938 1.4e-16 89.7 72 62.5
C05p51770 Brassica napus HOM05D007573 ORTHO05D009938 1.4e-16 89.7 56 71.4
BolC5t33863H Brassica oleracea HOM05D007573 ORTHO05D009938 1.4e-16 89.7 56 71.4
BraA03t13080Z Brassica rapa HOM05D003356 ORTHO05D004362 1.4e-16 89.7 72 62.5
Lj3g0024326 Lotus japonicus HOM05D007573 ORTHO05D009938 1.4e-16 89.7 60 75.0
ClCG10G006860 Citrullus lanatus HOM05D007573 ORTHO05D009938 3.1e-16 88.6 58 75.9
Lalb_Chr19g0134301 Lupinus albus HOM05D007573 ORTHO05D009938 3.1e-16 88.6 59 71.2
Thecc.07G080300 Theobroma cacao HOM05D007573 ORTHO05D009938 3.1e-16 88.6 57 73.7
Cc06_g21640 Coffea canephora HOM05D007573 ORTHO05D009938 4.1e-16 88.2 58 70.7
AL230U10020 Arabidopsis lyrata HOM05D007573 ORTHO05D013670 5.4e-16 87.8 58 65.5
Ciclev10010140m.g Citrus clementina HOM05D007573 ORTHO05D009938 5.4e-16 87.8 56 73.2
Thhalv10021902m.g Eutrema salsugineum HOM05D007573 ORTHO05D009938 7.0e-16 87.4 57 70.2
TWI39G0607 Tripterygium wilfordii HOM05D007573 ORTHO05D009938 7.0e-16 87.4 57 71.9
Lalb_Chr03g0030571 Lupinus albus HOM05D007573 ORTHO05D009938 9.1e-16 87.0 59 67.8
Medtr8g043400 Medicago truncatula HOM05D007573 ORTHO05D009938 9.1e-16 87.0 48 83.3
TWI77G0001 Tripterygium wilfordii HOM05D007573 ORTHO05D009938 9.1e-16 87.0 51 80.4
CiPaw.08G146300 Carya illinoinensis HOM05D007573 ORTHO05D009938 1.2e-15 86.7 48 83.3
COL.COLO4_09423 Corchorus olitorius HOM05D007573 ORTHO05D009938 1.6e-15 86.3 57 71.9
Atru.chr2.2713 Acer truncatum HOM05D007573 ORTHO05D009938 2.0e-15 85.9 58 70.7
AL3G27940 Arabidopsis lyrata HOM05D007573 ORTHO05D009938 2.0e-15 85.9 57 66.7
AT3G15395 Arabidopsis thaliana HOM05D007573 ORTHO05D009938 2.0e-15 85.9 57 66.7
BcaB06g29571 Brassica carinata HOM05D007573 ORTHO05D009938 2.7e-15 85.5 55 69.1
Psat4g143240 Pisum sativum HOM05D007573 ORTHO05D009938 2.7e-15 85.5 56 73.2
CARHR090450 Cardamine hirsuta HOM05D007573 ORTHO05D009938 3.5e-15 85.1 48 79.2
Gohir.A01G065200 Gossypium hirsutum HOM05D007573 ORTHO05D009938 3.5e-15 85.1 57 70.2
Prupe.4G184300 Prunus persica HOM05D007573 ORTHO05D009938 3.5e-15 85.1 55 70.9
RcHm_v2.0_Chr5g0034341 Rosa chinensis HOM05D007573 ORTHO05D009938 3.5e-15 85.1 54 74.1
FAN04G1519 Fragaria x ananassa HOM05D007573 ORTHO05D009938 5.9e-15 84.3 55 70.9
FAN18G1355 Fragaria x ananassa HOM05D007573 ORTHO05D009938 5.9e-15 84.3 55 70.9
FAN18G3111 Fragaria x ananassa HOM05D007573 ORTHO05D009938 5.9e-15 84.3 55 70.9
Potri.001G402000 Populus trichocarpa HOM05D007573 ORTHO05D009938 5.9e-15 84.3 55 70.9
Carub.0003s1512 Capsella rubella HOM05D007573 ORTHO05D009938 7.7e-15 84.0 57 66.7
Gorai.002G072400 Gossypium raimondii HOM05D007573 ORTHO05D009938 7.7e-15 84.0 48 77.1
MD00G1089500 Malus domestica HOM05D007573 ORTHO05D009938 1.3e-14 83.2 55 69.1
ATR0751G258 Amborella trichopoda HOM05D007573 ORTHO05D009938 1.7e-14 82.8 59 64.4
MSTRG.15220 Avicennia marina HOM05D007573 ORTHO05D009938 1.7e-14 82.8 57 66.7
CANSAT54G1030 Cannabis sativa HOM05D007573 ORTHO05D009938 1.7e-14 82.8 56 67.9
Duzib213G0732 Durio zibethinus HOM05D007573 ORTHO05D009938 1.7e-14 82.8 59 62.7
CDE03G0215 Ceratophyllum demersum HOM05D001610 ORTHO05D001585 3.8e-14 81.6 57 59.6
Solyc07g063250.3 Solanum lycopersicum HOM05D007573 ORTHO05D009938 3.8e-14 81.6 51 68.6
Actinidia09676 Actinidia chinensis HOM05D007573 ORTHO05D009938 5.0e-14 81.3 45 80.0
Nitab4.5_0003688g0030 Nicotiana tabacum HOM05D007573 ORTHO05D009938 5.0e-14 81.3 51 68.6
Nitab4.5_0003769g0010 Nicotiana tabacum HOM05D007573 ORTHO05D009938 5.0e-14 81.3 51 68.6
THA.LOC104810481 Tarenaya hassleriana HOM05D007573 ORTHO05D009938 8.5e-14 80.5 52 71.2
EL10Ac3g05359 Beta vulgaris HOM05D007573 ORTHO05D009938 1.1e-13 80.1 59 66.1
MELO3C016521.2 Cucumis melo HOM05D007573 ORTHO05D009938 1.1e-13 80.1 48 77.1
Lsat_1_v5_gn_7_105220 Lactuca sativa HOM05D007573 ORTHO05D009938 1.1e-13 80.1 42 88.1
Peaxi162Scf00069g01326 Petunia axillaris HOM05D007573 ORTHO05D009938 1.1e-13 80.1 51 64.7
C07p18110 Brassica napus HOM05D003404 ORTHO05D009938 1.5e-13 79.7 43 83.7
CsaV3_3G006210 Cucumis sativus L. HOM05D007573 ORTHO05D009938 1.5e-13 79.7 48 77.1
BcaC01g03875 Brassica carinata HOM05D007573 ORTHO05D009938 2.5e-13 79.0 56 71.4
Os02g0197400 Oryza sativa ssp. japonica HOM05D007573 ORTHO05D009938 4.2e-13 78.2 58 62.1
PSO017G6785 Papaver somniferum HOM05D007573 ORTHO05D009938 9.5e-13 77.0 52 67.3
PGR031G1039 Punica granatum HOM05D007573 ORTHO05D009938 1.6e-12 76.3 52 71.2
HPP92_024073 Vanilla planifolia HOM05D007573 ORTHO05D009938 2.1e-12 75.9 61 62.3
Aqoxy7G03752 Aquilegia oxysepala HOM05D007573 ORTHO05D009938 4.7e-12 74.7 54 66.7
Hund27723 Selenicereus undatus HOM05D007573 ORTHO05D009938 4.7e-12 74.7 56 66.1
Hund27736 Selenicereus undatus HOM05D007573 ORTHO05D009938 4.7e-12 74.7 56 66.1
Migut.M00851 Erythranthe guttata HOM05D007573 ORTHO05D009938 3.0e-11 72.0 55 56.4
MBI15_g18737_MAGBIO Magnolia biondii HOM05D007573 ORTHO05D009938 4.0e-11 71.6 42 71.4
Potri.006G225232 Populus trichocarpa HOM05D007573 ORTHO05D009938 8.3e-09 63.9 57 61.4
MD03G1224700 Malus domestica HOM05D007573 ORTHO05D009938 1.8e-08 62.8 43 67.4
SalBow7G4816 Salvia bowleyana HOM05D007573 ORTHO05D009938 1.3e-06 56.6 96 38.5
SHI14860 Sapria himalayana HOM05D007573 ORTHO05D009938 3.8e-06 55.1 43 48.8


User provided reference genes

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