Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004692 Camellia sinensis var. sinensis HOM05D007308 ORTHO05D009157 1.0e-105 386.7 190 100.0
CSS0017788 Camellia sinensis var. sinensis HOM05D007308 ORTHO05D009157 1.8e-86 322.8 190 86.3
Rhsim09G0141500 Rhododendron simsii HOM05D007308 ORTHO05D009157 1.1e-83 313.5 191 80.1
Hma1.2p1_0457F.1_g156910 Hydrangea macrophylla HOM05D007308 ORTHO05D009157 2.5e-80 302.4 183 78.1
Dinv08592 Davidia involucrata HOM05D007308 ORTHO05D009157 2.1e-79 299.3 188 77.1
vmacro10315 Vaccinium macrocarpon HOM05D007308 ORTHO05D009157 1.8e-78 296.2 187 77.5
MSTRG.27555 Avicennia marina HOM05D007308 ORTHO05D009157 1.6e-74 283.1 190 70.5
GSVIVG01034647001 Vitis vinifera HOM05D007308 ORTHO05D009157 4.6e-74 281.6 190 72.6
TAR623G1715 Trochodendron aralioides HOM05D007308 ORTHO05D009157 2.3e-73 279.3 187 71.7
CiPaw.13G043100 Carya illinoinensis HOM05D007308 ORTHO05D009157 6.6e-73 277.7 178 74.7
Lsat_1_v5_gn_3_53161 Lactuca sativa HOM05D007308 ORTHO05D009157 6.6e-73 277.7 190 71.1
Cc02_g09470 Coffea canephora HOM05D007308 ORTHO05D009157 3.6e-71 271.9 181 71.8
Prupe.2G071800 Prunus persica HOM05D007308 ORTHO05D009157 6.2e-71 271.2 189 68.3
THA.LOC104816471 Tarenaya hassleriana HOM05D007308 ORTHO05D009157 8.1e-71 270.8 189 70.4
Nn2g14273 Nelumbo nucifera HOM05D007308 ORTHO05D009157 1.4e-70 270.0 182 68.7
QL04p047115 Quercus lobata HOM05D007308 ORTHO05D009157 4.0e-70 268.5 189 70.4
Potri.010G241700 Populus trichocarpa HOM05D007308 ORTHO05D009157 5.2e-70 268.1 176 73.3
Medtr1g090630 Medicago truncatula HOM05D007308 ORTHO05D009157 1.2e-69 266.9 177 71.2
SalBow3G3836 Salvia bowleyana HOM05D007308 ORTHO05D009157 2.0e-69 266.2 190 70.5
Glyma.10G196200 Glycine max HOM05D007308 ORTHO05D009157 2.6e-69 265.8 173 70.5
Sabra10G0189200 Salix brachista HOM05D000139 ORTHO05D000103 2.6e-69 265.8 178 73.0
Glyma.20G194000 Glycine max HOM05D007308 ORTHO05D009157 5.8e-69 264.6 173 69.9
PGR044G1814 Punica granatum HOM05D007308 ORTHO05D009157 5.8e-69 264.6 187 66.3
arahy.Tifrunner.gnm1.ann1.ZU0NEU Arachis hypogaea HOM05D007308 ORTHO05D009157 7.6e-69 264.2 180 67.8
ClCG05G021890 Citrullus lanatus HOM05D007308 ORTHO05D009157 9.9e-69 263.8 173 72.3
Lj5g0023307 Lotus japonicus HOM05D007308 ORTHO05D009157 2.2e-68 262.7 169 72.8
HanXRQChr05g0147281 Helianthus annuus HOM05D007308 ORTHO05D009157 2.9e-68 262.3 183 68.9
Aqoxy1G00692 Aquilegia oxysepala HOM05D007308 ORTHO05D009157 4.9e-68 261.5 172 71.5
CDE02G0914 Ceratophyllum demersum HOM05D007308 ORTHO05D009157 4.9e-68 261.5 174 68.4
arahy.Tifrunner.gnm1.ann1.I1QH9V Arachis hypogaea HOM05D007308 ORTHO05D009157 1.4e-67 260.0 177 67.2
Migut.F00856 Erythranthe guttata HOM05D007308 ORTHO05D009157 1.4e-67 260.0 189 67.2
AT5G04830 Arabidopsis thaliana HOM05D007308 ORTHO05D009157 1.9e-67 259.6 174 69.5
ECA232G3668 Erigeron canadensis HOM05D007308 ORTHO05D009157 1.9e-67 259.6 190 66.8
TWI15G0952 Tripterygium wilfordii HOM05D007308 ORTHO05D009157 1.9e-67 259.6 183 66.7
Eucgr.J00279 Eucalyptus grandis HOM05D007308 ORTHO05D009157 3.2e-67 258.8 192 67.7
AL6G14490 Arabidopsis lyrata HOM05D007308 ORTHO05D009157 5.4e-67 258.1 187 66.3
MBI17_g22148_MAGBIO Magnolia biondii HOM05D007308 ORTHO05D009157 5.4e-67 258.1 175 69.7
Lalb_Chr02g0150981 Lupinus albus HOM05D007308 ORTHO05D009157 7.1e-67 257.7 175 70.3
CsaV3_5G035250 Cucumis sativus L. HOM05D007308 ORTHO05D009157 9.2e-67 257.3 178 69.7
Lj3C924T9 Lonicera japonica HOM05D007308 ORTHO05D009157 1.2e-66 256.9 219 61.2
Thecc.10G116800 Theobroma cacao HOM05D007308 ORTHO05D009157 2.1e-66 256.1 192 67.2
Sed0002245 Sechium edule HOM05D007308 ORTHO05D009157 2.7e-66 255.8 179 67.6
Haze_03470 Corylus avellana HOM05D007308 ORTHO05D009157 4.6e-66 255.0 187 70.1
Gohir.D13G010000 Gossypium hirsutum HOM05D007308 ORTHO05D009157 4.6e-66 255.0 170 71.2
Ciclev10016517m.g Citrus clementina HOM05D007308 ORTHO05D009157 7.8e-66 254.2 185 67.6
Carub.0006s0371 Capsella rubella HOM05D007308 ORTHO05D009157 1.7e-65 253.1 166 70.5
CANSAT56G1109 Cannabis sativa HOM05D007308 ORTHO05D009157 2.3e-65 252.7 174 69.0
BcaB01g05916 Brassica carinata HOM05D007308 ORTHO05D009157 3.9e-65 251.9 183 66.1
C03p02230 Brassica napus HOM05D007308 ORTHO05D009157 3.9e-65 251.9 183 66.1
BolC3t12774H Brassica oleracea HOM05D007308 ORTHO05D009157 3.9e-65 251.9 183 66.1
Gohir.A13G009300 Gossypium hirsutum HOM05D007308 ORTHO05D009157 3.9e-65 251.9 170 70.6
Gorai.013G010700 Gossypium raimondii HOM05D007308 ORTHO05D009157 3.9e-65 251.9 170 70.6
Nitab4.5_0001047g0020 Nicotiana tabacum HOM05D007308 ORTHO05D009157 5.1e-65 251.5 179 69.3
Sed0004755 Sechium edule HOM05D007308 ORTHO05D009157 5.1e-65 251.5 169 69.8
Peaxi162Scf00725g00524 Petunia axillaris HOM05D007308 ORTHO05D009157 1.1e-64 250.4 179 69.8
Hund06794 Selenicereus undatus HOM05D007308 ORTHO05D009157 1.5e-64 250.0 180 67.2
Phvul.007G138800 Phaseolus vulgaris HOM05D007308 ORTHO05D009157 1.9e-64 249.6 175 66.9
Sc20g0001110 Simmondsia chinensis HOM05D007308 ORTHO05D009157 1.9e-64 249.6 177 67.8
PGSC0003DMG400001980 Solanum tuberosum HOM05D007308 ORTHO05D009157 1.9e-64 249.6 176 69.9
Aa31LG11G5650 Aethionema arabicum HOM05D007308 ORTHO05D009157 2.5e-64 249.2 165 71.5
Duzib106G1839 Durio zibethinus HOM05D007308 ORTHO05D009157 2.5e-64 249.2 180 68.3
Sabra08G0011300 Salix brachista HOM05D007308 ORTHO05D009157 2.5e-64 249.2 186 63.4
Sp6g38000 Schrenkiella parvula HOM05D007308 ORTHO05D009157 2.5e-64 249.2 157 72.6
Thhalv10014751m.g Eutrema salsugineum HOM05D007308 ORTHO05D009157 4.3e-64 248.4 157 73.9
SGA_v2.0_scaffold272G46352 Striga asiatica HOM05D007308 ORTHO05D009157 1.2e-63 246.9 252 53.2
CARHR208450 Cardamine hirsuta HOM05D007308 ORTHO05D009157 1.6e-63 246.5 176 65.9
PSO339G2601 Papaver somniferum HOM05D007308 ORTHO05D009157 2.1e-63 246.1 161 70.2
MD07G1062000 Malus domestica HOM05D007308 ORTHO05D009157 2.8e-63 245.7 194 63.4
VMungo0720G2616 Vigna mungo HOM05D007308 ORTHO05D009157 1.4e-62 243.4 174 65.5
Lalb_Chr21g0312841 Lupinus albus HOM05D007308 ORTHO05D009157 1.8e-62 243.0 154 72.1
PSO384G3587 Papaver somniferum HOM05D007308 ORTHO05D009157 1.8e-62 243.0 161 68.9
unitig_32.g11899 Utricularia gibba HOM05D007308 ORTHO05D009157 3.1e-62 242.3 176 65.9
A10p31380 Brassica napus HOM05D007308 ORTHO05D009157 4.0e-62 241.9 157 70.7
A03p01870 Brassica napus HOM05D007308 ORTHO05D009157 6.8e-62 241.1 183 63.4
BraA03t09557Z Brassica rapa HOM05D007308 ORTHO05D009157 6.8e-62 241.1 183 63.4
PGR044G1810 Punica granatum HOM05D007308 ORTHO05D009157 8.9e-62 240.7 190 60.0
BcaC06g32190 Brassica carinata HOM05D007308 ORTHO05D009157 1.2e-61 240.4 192 62.5
Zm00001eb362380 Zea mays HOM05D007308 ORTHO05D009157 1.2e-61 240.4 155 67.7
C09p72050 Brassica napus HOM05D007308 ORTHO05D009157 2.0e-61 239.6 157 70.1
Os01g0965900 Oryza sativa ssp. japonica HOM05D007308 ORTHO05D009157 2.6e-61 239.2 160 68.8
HPP92_005473 Vanilla planifolia HOM05D007308 ORTHO05D009157 9.9e-61 237.3 176 64.8
BraA10t45184Z Brassica rapa HOM05D007308 ORTHO05D009157 6.4e-60 234.6 165 67.3
ATR0772G202 Amborella trichopoda HOM05D007308 ORTHO05D009157 8.4e-60 234.2 174 63.2
BolC9t59950H Brassica oleracea HOM05D007308 ORTHO05D009157 1.9e-59 233.0 200 60.0
Actinidia34730 Actinidia chinensis HOM05D000139 ORTHO05D000103 4.3e-56 221.9 132 84.1
Solyc11g006505.1 Solanum lycopersicum HOM05D007308 ORTHO05D009157 5.3e-54 214.9 163 65.0
Sopen11g002410 Solanum pennellii HOM05D007308 ORTHO05D009157 2.0e-53 213.0 134 74.6
MELO3C012339.2 Cucumis melo HOM05D007308 ORTHO05D009157 4.4e-53 211.8 141 72.3
CiPaw.14G034600 Carya illinoinensis HOM05D007308 ORTHO05D009157 1.1e-51 207.2 199 56.3
Pp3c19_15880 Physcomitrium patens HOM05D007308 ORTHO05D009157 5.4e-51 204.9 159 57.9
AagrBONN_evm.TU.Sc2ySwM_344.2550 Anthoceros agrestis HOM05D007308 ORTHO05D009157 1.2e-50 203.8 180 54.4
Mapoly0021s0141 Marchantia polymorpha HOM05D007308 ORTHO05D009157 1.6e-50 203.4 151 61.6
Pp3c14_20980 Physcomitrium patens HOM05D007308 ORTHO05D009157 2.1e-50 203.0 152 61.2
SEGI_14438 Sequoiadendron giganteum HOM05D007308 ORTHO05D009157 5.1e-49 198.4 155 63.9
SMO143G0271 Selaginella moellendorffii HOM05D007308 ORTHO05D009157 8.7e-49 197.6 154 62.3
RcHm_v2.0_Chr1g0331851 Rosa chinensis HOM05D007308 ORTHO05D009157 1.1e-46 190.7 145 64.8
Manes.10G060700 Manihot esculenta HOM05D007308 ORTHO05D009157 4.9e-44 181.8 120 70.0
SMO265G0003 Selaginella moellendorffii HOM05D007308 ORTHO05D009157 1.4e-43 180.3 154 59.1
SEGI_29808 Sequoiadendron giganteum HOM05D007308 ORTHO05D009157 4.2e-43 178.7 126 68.3
Pp3c1_28520 Physcomitrium patens HOM05D007308 ORTHO05D009157 2.6e-37 159.5 119 61.3
BcaNung05151 Brassica carinata HOM05D007308 ORTHO05D009157 1.6e-31 140.2 197 43.7
Atru.BG.262.p Acer truncatum HOM05D007308 ORTHO05D009157 3.1e-30 136.0 80 82.5
Potri.008G017701 Populus trichocarpa HOM05D007308 ORTHO05D009157 5.3e-30 135.2 84 70.2
CBR_g30213 Chara braunii HOM05D007308 ORTHO05D009157 4.5e-21 105.5 149 38.3
Pp3c2_31450 Physcomitrium patens HOM05D007308 ORTHO05D009157 3.8e-20 102.4 90 51.1
Actinidia27055 Actinidia chinensis HOM05D007308 ORTHO05D009157 2.8e-15 86.3 90 58.9
PGSC0003DMG400007605 Solanum tuberosum HOM05D000011 ORTHO05D000018 3.2e-11 72.8 45 68.9
Sopen11g002430 Solanum pennellii HOM05D000011 ORTHO05D000018 8.8e-09 64.7 45 64.4
PGSC0003DMG402001979 Solanum tuberosum HOM05D000011 ORTHO05D000018 2.0e-08 63.5 41 65.9


User provided reference genes

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