Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004675 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 1.3e-61 239.6 124 100.0
CSS0048767 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 4.4e-33 144.8 70 94.3
Hma1.2p1_0051F.1_g029840 Hydrangea macrophylla HOM05D006227 ORTHO05D007714 2.3e-26 122.5 70 80.0
Dinv12530 Davidia involucrata HOM05D006227 ORTHO05D007714 1.1e-25 120.2 70 78.6
Actinidia07213 Actinidia chinensis HOM05D006227 ORTHO05D007714 7.5e-25 117.5 68 77.9
Eucgr.J00418 Eucalyptus grandis HOM05D006227 ORTHO05D007714 7.5e-25 117.5 71 76.1
vmacro14378 Vaccinium macrocarpon HOM05D006227 ORTHO05D007714 7.5e-25 117.5 70 77.1
Dinv29415 Davidia involucrata HOM05D006227 ORTHO05D007714 1.7e-24 116.3 70 75.7
Prupe.6G117700 Prunus persica HOM05D006227 ORTHO05D007714 2.8e-24 115.5 70 72.9
CSS0049374 Camellia sinensis var. sinensis HOM05D006227 ORTHO05D007714 6.3e-24 114.4 77 72.7
MSTRG.18723 Avicennia marina HOM05D006227 ORTHO05D007714 8.2e-24 114.0 70 75.7
MSTRG.21069 Avicennia marina HOM05D006227 ORTHO05D007714 1.1e-23 113.6 70 74.3
Ciclev10029628m.g Citrus clementina HOM05D006227 ORTHO05D007714 1.1e-23 113.6 65 78.5
RcHm_v2.0_Chr5g0055601 Rosa chinensis HOM05D006227 ORTHO05D007714 1.1e-23 113.6 70 72.9
Oeu050173.1 Olea europaea HOM05D006227 ORTHO05D007714 1.4e-23 113.2 70 74.3
Ca_18451_v3 Cicer arietinum L. HOM05D006227 ORTHO05D007714 4.1e-23 111.7 71 71.8
CiPaw.13G141700 Carya illinoinensis HOM05D006227 ORTHO05D007714 5.3e-23 111.3 71 70.4
ECA238G2178 Erigeron canadensis HOM05D006227 ORTHO05D007714 5.3e-23 111.3 71 73.2
MD14G1038500 Malus domestica HOM05D006227 ORTHO05D007714 7.0e-23 110.9 70 74.3
Sed0008116 Sechium edule HOM05D006227 ORTHO05D007714 7.0e-23 110.9 73 68.5
SGA_v2.0_scaffold45G17093 Striga asiatica HOM05D006227 ORTHO05D007714 7.0e-23 110.9 70 71.4
Thecc.09G292900 Theobroma cacao HOM05D006227 ORTHO05D007714 7.0e-23 110.9 69 69.6
Atru.chr3.3392 Acer truncatum HOM05D006227 ORTHO05D007714 1.2e-22 110.2 71 70.4
Manes.11G155900 Manihot esculenta HOM05D006227 ORTHO05D007714 1.2e-22 110.2 69 68.1
Psat7g105560 Pisum sativum HOM05D006227 ORTHO05D007714 1.2e-22 110.2 71 74.6
MELO3C004803.2 Cucumis melo HOM05D006227 ORTHO05D007714 2.7e-22 109.0 69 69.6
Duzib170G0407 Durio zibethinus HOM05D006227 ORTHO05D007714 2.7e-22 109.0 66 74.2
Potri.004G189300 Populus trichocarpa HOM05D006227 ORTHO05D007714 2.7e-22 109.0 76 65.8
TPR.G13925 Trifolium pratense HOM05D006227 ORTHO05D007714 3.5e-22 108.6 69 72.5
CsaV3_1G014480 Cucumis sativus L. HOM05D006227 ORTHO05D007714 4.5e-22 108.2 58 79.3
Nitab4.5_0002781g0010 Nicotiana tabacum HOM05D006227 ORTHO05D007714 4.5e-22 108.2 70 74.3
FvH4_3g30110 Fragaria vesca HOM05D006227 ORTHO05D007714 5.9e-22 107.8 69 73.9
FAN16G3386 Fragaria x ananassa HOM05D006227 ORTHO05D007714 5.9e-22 107.8 66 72.7
PGR119G0591 Punica granatum HOM05D006227 ORTHO05D007714 5.9e-22 107.8 84 60.7
Psat7g105760 Pisum sativum HOM05D006227 ORTHO05D007714 7.7e-22 107.5 71 71.8
ATR0712G069 Amborella trichopoda HOM05D006227 ORTHO05D007714 1.3e-21 106.7 58 82.8
GSVIVG01023006001 Vitis vinifera HOM05D006227 ORTHO05D007714 1.3e-21 106.7 72 69.4
Migut.D02328 Erythranthe guttata HOM05D006227 ORTHO05D007714 1.7e-21 106.3 70 68.6
Glyma.07G187100 Glycine max HOM05D006227 ORTHO05D007714 2.2e-21 105.9 69 69.6
Cc01_g09910 Coffea canephora HOM05D006227 ORTHO05D007714 2.9e-21 105.5 70 68.6
ClCG01G012780 Citrullus lanatus HOM05D006227 ORTHO05D007714 3.8e-21 105.1 65 69.2
TAR623G1401 Trochodendron aralioides HOM05D006227 ORTHO05D007714 3.8e-21 105.1 69 68.1
CAN.G170.132 Capsicum annuum HOM05D006227 ORTHO05D007714 5.0e-21 104.8 67 71.6
Duzib168G0197 Durio zibethinus HOM05D006227 ORTHO05D007714 5.0e-21 104.8 70 67.1
HPP92_003486 Vanilla planifolia HOM05D006227 ORTHO05D007714 5.0e-21 104.8 80 60.0
Nn6g35079 Nelumbo nucifera HOM05D006227 ORTHO05D007714 6.5e-21 104.4 55 80.0
Solyc01g086860.3 Solanum lycopersicum HOM05D006227 ORTHO05D007714 1.5e-20 103.2 71 71.8
Sopen01g033870 Solanum pennellii HOM05D006227 ORTHO05D007714 1.5e-20 103.2 71 71.8
arahy.Tifrunner.gnm1.ann1.U4LPMY Arachis hypogaea HOM05D006227 ORTHO05D007714 1.9e-20 102.8 67 65.7
CANSAT54G1955 Cannabis sativa HOM05D006227 ORTHO05D007714 1.9e-20 102.8 77 59.7
arahy.Tifrunner.gnm1.ann1.ME5340 Arachis hypogaea HOM05D006227 ORTHO05D007714 3.2e-20 102.1 60 71.7
Gohir.D09G092300 Gossypium hirsutum HOM05D006227 ORTHO05D007714 3.2e-20 102.1 70 67.1
Gorai.006G108900 Gossypium raimondii HOM05D006227 ORTHO05D007714 3.2e-20 102.1 70 67.1
Sc12g0004090 Simmondsia chinensis HOM05D006227 ORTHO05D007714 5.5e-20 101.3 72 66.7
Rhsim01G0209000 Rhododendron simsii HOM05D006227 ORTHO05D007714 9.4e-20 100.5 90 56.7
HPP92_026884 Vanilla planifolia HOM05D006227 ORTHO05D007714 9.4e-20 100.5 80 58.8
EL10Ac9g21059 Beta vulgaris HOM05D006227 ORTHO05D007714 1.6e-19 99.8 58 72.4
Gohir.A03G000008 Gossypium hirsutum HOM05D006227 ORTHO05D007714 1.6e-19 99.8 70 65.7
Solyc01g112370.3 Solanum lycopersicum HOM05D006227 ORTHO05D007714 1.6e-19 99.8 71 70.4
VMungo0251G3527 Vigna mungo HOM05D006227 ORTHO05D007714 1.6e-19 99.8 68 67.6
DCAR_015484 Daucus carota HOM05D006227 ORTHO05D007714 2.1e-19 99.4 70 65.7
Gorai.006G108700 Gossypium raimondii HOM05D006227 ORTHO05D007714 2.1e-19 99.4 70 65.7
Phvul.002G218500 Phaseolus vulgaris HOM05D006227 ORTHO05D007714 2.1e-19 99.4 68 64.7
Medtr3g014200 Medicago truncatula HOM05D006227 ORTHO05D007714 3.6e-19 98.6 69 68.1
Medtr4g092090 Medicago truncatula HOM05D006227 ORTHO05D007714 3.6e-19 98.6 69 68.1
AT4G25315 Arabidopsis thaliana HOM05D006227 ORTHO05D007714 4.7e-19 98.2 70 61.4
Gohir.A04G148400 Gossypium hirsutum HOM05D006227 ORTHO05D007714 4.7e-19 98.2 70 64.3
Gohir.A08G253700 Gossypium hirsutum HOM05D006227 ORTHO05D007714 1.0e-18 97.1 70 64.3
Gohir.A09G092200 Gossypium hirsutum HOM05D006227 ORTHO05D007714 1.8e-18 96.3 69 62.3
CARHR232720 Cardamine hirsuta HOM05D006227 ORTHO05D007714 2.3e-18 95.9 70 58.6
Sp7g23330 Schrenkiella parvula HOM05D006227 ORTHO05D007714 3.0e-18 95.5 70 58.6
THA.LOC104799532 Tarenaya hassleriana HOM05D006227 ORTHO05D007714 3.0e-18 95.5 68 66.2
Carub.0008s1058 Capsella rubella HOM05D006227 ORTHO05D007714 4.0e-18 95.1 71 62.0
Lalb_Chr09g0327121 Lupinus albus HOM05D006227 ORTHO05D007714 4.0e-18 95.1 72 62.5
Sc06g0007110 Simmondsia chinensis HOM05D006227 ORTHO05D007714 4.0e-18 95.1 67 62.7
A03p55890 Brassica napus HOM05D006227 ORTHO05D007714 5.2e-18 94.7 70 57.1
TWI56G0405 Tripterygium wilfordii HOM05D006227 ORTHO05D007714 6.8e-18 94.4 66 65.2
CDE02G3751 Ceratophyllum demersum HOM05D006227 ORTHO05D007714 8.8e-18 94.0 66 63.6
Lalb_Chr16g0383271 Lupinus albus HOM05D006227 ORTHO05D007714 1.2e-17 93.6 67 65.7
Carub.0007s1570 Capsella rubella HOM05D006227 ORTHO05D007714 2.0e-17 92.8 70 58.6
C07p54180 Brassica napus HOM05D006227 ORTHO05D007714 3.4e-17 92.0 70 55.7
BcaC06g32822 Brassica carinata HOM05D006227 ORTHO05D007714 4.4e-17 91.7 70 55.7
BcaNung06163 Brassica carinata HOM05D006227 ORTHO05D007714 1.3e-16 90.1 70 55.7
SalBow5G0633 Salvia bowleyana HOM05D006227 ORTHO05D007714 1.3e-16 90.1 69 56.5
SalBow5G1351 Salvia bowleyana HOM05D006227 ORTHO05D007714 1.3e-16 90.1 69 56.5
Gohir.A10G243300 Gossypium hirsutum HOM05D006227 ORTHO05D007714 2.8e-16 89.0 52 73.1
PSO339G0999 Papaver somniferum HOM05D006227 ORTHO05D007714 6.3e-16 87.8 62 66.1
Gohir.D09G092100 Gossypium hirsutum HOM05D006227 ORTHO05D007714 1.4e-15 86.7 74 58.1
Zm00001eb314390 Zea mays HOM05D006227 ORTHO05D007714 1.8e-15 86.3 71 56.3
AL7G27820 Arabidopsis lyrata HOM05D006227 ORTHO05D007714 2.4e-15 85.9 89 47.2
Manes.04G010000 Manihot esculenta HOM05D006227 ORTHO05D007714 3.1e-15 85.5 50 70.0
Os09g0516800 Oryza sativa ssp. japonica HOM05D006227 ORTHO05D007714 3.1e-15 85.5 59 61.0
Pp3c23_15340 Physcomitrium patens HOM05D006227 ORTHO05D007714 5.4e-15 84.7 67 49.3
Aa31sc16G160 Aethionema arabicum HOM05D006227 ORTHO05D007714 4.5e-14 81.6 84 48.8
BraA03t14660Z Brassica rapa HOM05D006227 ORTHO05D007714 7.7e-14 80.9 92 42.4
BolC7t45904H Brassica oleracea HOM05D006227 ORTHO05D007714 1.3e-13 80.1 87 43.7
A01p16610 Brassica napus HOM05D006227 ORTHO05D007714 2.2e-13 79.3 87 44.8
C01p20840 Brassica napus HOM05D006227 ORTHO05D007714 2.2e-13 79.3 85 45.9
BraA01t01616Z Brassica rapa HOM05D006227 ORTHO05D007714 2.2e-13 79.3 87 44.8
Mapoly0046s0116 Marchantia polymorpha HOM05D006227 ORTHO05D007714 2.2e-13 79.3 58 56.9
SEGI_33746 Sequoiadendron giganteum HOM05D006227 ORTHO05D007714 1.5e-12 76.6 56 58.9
DCAR_018745 Daucus carota HOM05D006227 ORTHO05D007714 2.5e-12 75.9 42 78.6
Nitab4.5_0006850g0030 Nicotiana tabacum HOM05D006227 ORTHO05D007714 3.2e-12 75.5 42 78.6
PGSC0003DMG400025251 Solanum tuberosum HOM05D006227 ORTHO05D007714 3.2e-12 75.5 42 78.6
MD03G1133000 Malus domestica HOM05D006227 ORTHO05D007714 5.5e-12 74.7 40 80.0
Peaxi162Scf00428g01022 Petunia axillaris HOM05D006227 ORTHO05D007714 7.2e-12 74.3 46 71.7
Hund07714 Selenicereus undatus HOM05D006227 ORTHO05D007714 7.2e-12 74.3 97 40.2
Nitab4.5_0001542g0090 Nicotiana tabacum HOM05D006227 ORTHO05D007714 9.4e-12 73.9 42 76.2
QL01p013949 Quercus lobata HOM05D006227 ORTHO05D007714 9.4e-12 73.9 125 35.2
Lsat_1_v5_gn_2_96480 Lactuca sativa HOM05D006227 ORTHO05D007714 1.2e-11 73.6 40 75.0
AagrBONN_evm.TU.Sc2ySwM_228.5102 Anthoceros agrestis HOM05D006227 ORTHO05D007714 3.6e-11 72.0 56 51.8
Aqoxy2G01473 Aquilegia oxysepala HOM05D006227 ORTHO05D007714 3.6e-11 72.0 42 73.8
AUR62023956 Chenopodium quinoa HOM05D006227 ORTHO05D007714 3.6e-11 72.0 42 71.4
AUR62036497 Chenopodium quinoa HOM05D006227 ORTHO05D007714 3.6e-11 72.0 40 75.0
AUR62037073 Chenopodium quinoa HOM05D006227 ORTHO05D007714 3.6e-11 72.0 40 75.0
Lj4g0025300 Lotus japonicus HOM05D006227 ORTHO05D007714 6.1e-11 71.2 40 77.5
FAN11G2712 Fragaria x ananassa HOM05D006227 ORTHO05D007714 8.0e-11 70.9 43 76.7
HanXRQChr07g0197671 Helianthus annuus HOM05D006227 ORTHO05D007714 8.0e-11 70.9 42 73.8
Duzib170G0945 Durio zibethinus HOM05D006227 ORTHO05D007714 6.8e-10 67.8 42 66.7
SMO144G0106 Selaginella moellendorffii HOM05D006227 ORTHO05D007714 2.2e-08 62.8 69 36.2
Oeu023727.1 Olea europaea HOM05D006227 ORTHO05D007714 4.9e-08 61.6 37 78.4
unitig_899.g15369 Utricularia gibba HOM05D006227 ORTHO05D007714 1.1e-07 60.5 37 70.3
MBI01_g43174_MAGBIO Magnolia biondii HOM05D006227 ORTHO05D007714 5.4e-07 58.2 39 66.7
RcHm_v2.0_Chr4g0411551 Rosa chinensis HOM05D000001 ORTHO05D000003 1.2e-06 57.0 36 69.4
MCO03G239 Micromonas commoda HOM05D006227 ORTHO05D007714 1.6e-06 56.6 46 45.7
Actinidia21557 Actinidia chinensis HOM05D012217 ORTHO05D009412 4.5e-06 55.1 58 60.3


User provided reference genes

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