Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 5.8e-59 230.7 120 100.0
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.4e-49 199.5 123 89.4
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 1.3e-42 176.4 119 81.5
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 6.5e-42 174.1 119 81.5
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 2.1e-40 169.1 121 77.7
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 2.1e-40 169.1 121 77.7
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 1.4e-39 166.4 116 78.4
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 3.0e-39 165.2 120 74.2
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 6.7e-39 164.1 120 76.7
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 6.7e-39 164.1 110 80.0
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 2.6e-38 162.2 110 79.1
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 4.4e-38 161.4 115 77.4
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 5.7e-38 161.0 119 73.9
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 9.7e-38 160.2 120 73.3
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 1.7e-37 159.5 115 76.5
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 3.7e-37 158.3 119 72.3
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 4.8e-37 157.9 113 76.1
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 4.8e-37 157.9 122 73.0
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 8.2e-37 157.1 120 72.5
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 1.1e-36 156.8 111 75.7
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 1.1e-36 156.8 90 84.4
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 1.8e-36 156.0 110 76.4
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 2.4e-36 155.6 113 75.2
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 3.1e-36 155.2 112 73.2
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 3.1e-36 155.2 117 73.5
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 3.1e-36 155.2 115 73.0
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 4.1e-36 154.8 115 73.0
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 5.3e-36 154.5 113 73.5
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 7.0e-36 154.1 119 71.4
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 9.1e-36 153.7 119 71.4
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 9.1e-36 153.7 90 86.7
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 1.2e-35 153.3 114 73.7
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 1.5e-35 152.9 111 73.9
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 1.5e-35 152.9 115 73.0
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 2.0e-35 152.5 113 72.6
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 2.6e-35 152.1 116 72.4
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 2.6e-35 152.1 116 72.4
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 2.6e-35 152.1 119 68.9
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 2.6e-35 152.1 117 72.6
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 4.5e-35 151.4 114 71.1
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 4.5e-35 151.4 129 67.4
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 4.5e-35 151.4 110 73.6
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 5.9e-35 151.0 118 70.3
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 5.9e-35 151.0 115 71.3
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 5.9e-35 151.0 112 72.3
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 7.7e-35 150.6 113 72.6
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 7.7e-35 150.6 120 66.7
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 7.7e-35 150.6 108 75.0
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 7.7e-35 150.6 90 82.2
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 7.7e-35 150.6 90 82.2
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 7.7e-35 150.6 90 82.2
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 7.7e-35 150.6 90 82.2
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 7.7e-35 150.6 90 82.2
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 7.7e-35 150.6 120 70.8
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 7.7e-35 150.6 119 68.1
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 7.7e-35 150.6 119 68.1
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 1.7e-34 149.4 114 71.1
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 1.7e-34 149.4 114 71.1
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 1.7e-34 149.4 114 71.1
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 2.2e-34 149.1 114 71.1
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 2.2e-34 149.1 113 70.8
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 2.9e-34 148.7 114 71.9
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 2.9e-34 148.7 90 81.1
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 2.9e-34 148.7 127 67.7
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 3.8e-34 148.3 114 70.2
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 3.8e-34 148.3 114 69.3
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 3.8e-34 148.3 110 70.9
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 3.8e-34 148.3 120 65.8
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 5.0e-34 147.9 113 69.9
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 5.0e-34 147.9 108 72.2
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 5.0e-34 147.9 120 65.8
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 5.0e-34 147.9 120 65.8
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 6.5e-34 147.5 113 70.8
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 6.5e-34 147.5 120 70.0
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 1.1e-33 146.7 113 69.9
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 1.1e-33 146.7 130 61.5
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 1.1e-33 146.7 90 80.0
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 1.1e-33 146.7 114 69.3
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 1.4e-33 146.4 114 70.2
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 1.4e-33 146.4 90 82.2
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 2.5e-33 145.6 114 69.3
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 2.5e-33 145.6 114 69.3
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 2.5e-33 145.6 113 71.7
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 3.2e-33 145.2 113 69.9
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 3.2e-33 145.2 114 70.2
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 4.2e-33 144.8 114 69.3
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 4.2e-33 144.8 88 81.8
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 4.2e-33 144.8 107 70.1
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 5.5e-33 144.4 114 68.4
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 5.5e-33 144.4 114 68.4
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 5.5e-33 144.4 114 68.4
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 5.5e-33 144.4 119 65.5
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 5.5e-33 144.4 114 68.4
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 7.2e-33 144.1 114 67.5
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 9.4e-33 143.7 115 65.2
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 1.6e-32 142.9 88 78.4
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 2.1e-32 142.5 110 67.3
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 3.6e-32 141.7 110 68.2
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 6.1e-32 141.0 119 66.4
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 8.0e-32 140.6 106 69.8
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 1.0e-31 140.2 110 68.2
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 1.4e-31 139.8 110 67.3
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 3.0e-31 138.7 107 68.2
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 3.0e-31 138.7 114 66.7
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 3.9e-31 138.3 112 67.0
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 8.8e-31 137.1 109 66.1
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 1.5e-30 136.3 111 65.8
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 2.0e-30 136.0 111 65.8
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 9.7e-30 133.7 81 80.2
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 2.2e-29 132.5 120 60.0
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 8.2e-29 130.6 101 70.3
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 5.3e-28 127.9 120 58.3
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 7.7e-27 124.0 114 62.3
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 7.7e-27 124.0 99 66.7
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 1.0e-26 123.6 104 59.6
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 1.0e-26 123.6 95 71.6
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 1.7e-26 122.9 119 58.8
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.7e-26 122.9 76 78.9
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 1.7e-26 122.9 110 59.1
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 2.5e-25 119.0 121 55.4
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 2.7e-24 115.5 100 64.0
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 6.1e-24 114.4 96 65.6
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 1.8e-23 112.8 69 79.7
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 1.2e-22 110.2 65 84.6
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 1.5e-22 109.8 68 77.9
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 1.5e-22 109.8 67 80.6
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 2.6e-22 109.0 115 53.0
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 7.5e-22 107.5 66 75.8
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 1.4e-20 103.2 69 76.8
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 1.8e-20 102.8 112 51.8
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 2.7e-19 99.0 80 68.8
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.7e-18 96.3 82 64.6
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 1.1e-17 93.6 104 49.0
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 4.2e-17 91.7 56 80.4
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 7.2e-17 90.9 74 67.6
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 1.2e-16 90.1 83 61.4
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 1.2e-16 90.1 83 61.4
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 1.4e-15 86.7 72 66.7
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 3.0e-15 85.5 85 58.8
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 4.0e-15 85.1 56 76.8
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 2.6e-14 82.4 72 65.3
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 5.4e-12 74.7 106 43.4
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 2.0e-11 72.8 64 54.7
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 2.7e-11 72.4 107 42.1
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 3.5e-11 72.0 53 66.0
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 7.7e-11 70.9 87 52.9
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 2.9e-10 68.9 109 45.9
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 2.1e-08 62.8 80 47.5
arahy.Tifrunner.gnm1.ann1.XW4Y8U Arachis hypogaea HOM05D001997 ORTHO05D005560 2.3e-07 59.3 74 48.6
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 1.5e-06 56.6 121 32.2
arahy.Tifrunner.gnm1.ann1.PZN0G5 Arachis hypogaea HOM05D001997 ORTHO05D005560 2.0e-06 56.2 38 73.7
SGA_v2.0_scaffold13G06711 Striga asiatica HOM05D001997 ORTHO05D005560 7.5e-06 54.3 37 64.9


User provided reference genes

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