Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004619 Camellia sinensis var. sinensis HOM05D003206 ORTHO05D024104 5.8e-49 197.2 98 100.0
CSS0015374 Camellia sinensis var. sinensis HOM05D003206 ORTHO05D005207 3.7e-11 71.6 38 92.1
Actinidia01729 Actinidia chinensis HOM05D003206 ORTHO05D017170 2.7e-09 65.5 38 81.6
Actinidia03225 Actinidia chinensis HOM05D003206 ORTHO05D005207 2.7e-09 65.5 38 81.6
Eucgr.J03080 Eucalyptus grandis HOM05D003206 ORTHO05D005207 2.7e-09 65.5 38 78.9
CiPaw.01G250100 Carya illinoinensis HOM05D003206 ORTHO05D005207 4.5e-09 64.7 38 78.9
Duzib192G0877 Durio zibethinus HOM05D003206 ORTHO05D005207 4.5e-09 64.7 38 81.6
ECA247G4132 Erigeron canadensis HOM05D003206 ORTHO05D005207 4.5e-09 64.7 38 81.6
Eucgr.F03908 Eucalyptus grandis HOM05D003206 ORTHO05D005207 4.5e-09 64.7 38 78.9
Ah.01g020430 Amaranthus hybridus HOM05D003206 ORTHO05D005207 5.9e-09 64.3 38 76.3
Actinidia18218 Actinidia chinensis HOM05D003206 ORTHO05D005207 7.7e-09 63.9 38 78.9
Cpa.g.sc10.151 Carica papaya HOM05D003206 ORTHO05D005207 7.7e-09 63.9 38 78.9
Ciclev10025360m.g Citrus clementina HOM05D003206 ORTHO05D005207 7.7e-09 63.9 38 78.9
Duzib160G0518 Durio zibethinus HOM05D003206 ORTHO05D005207 7.7e-09 63.9 38 78.9
Gohir.A06G115200 Gossypium hirsutum HOM05D003206 ORTHO05D005207 7.7e-09 63.9 38 81.6
Gohir.D06G120000 Gossypium hirsutum HOM05D003206 ORTHO05D005207 7.7e-09 63.9 38 81.6
Gorai.010G138000 Gossypium raimondii HOM05D003206 ORTHO05D005207 7.7e-09 63.9 38 81.6
MD09G1222300 Malus domestica HOM05D003206 ORTHO05D005207 7.7e-09 63.9 38 78.9
MD17G1215600 Malus domestica HOM05D003206 ORTHO05D005207 7.7e-09 63.9 38 78.9
Nn8g39607 Nelumbo nucifera HOM05D003206 ORTHO05D005207 7.7e-09 63.9 38 84.2
Nitab4.5_0003072g0120 Nicotiana tabacum HOM05D003206 ORTHO05D005207 7.7e-09 63.9 38 81.6
Nitab4.5_0004013g0050 Nicotiana tabacum HOM05D003206 ORTHO05D005207 7.7e-09 63.9 38 81.6
Peaxi162Scf00553g00628 Petunia axillaris HOM05D003206 ORTHO05D005207 7.7e-09 63.9 38 81.6
Prupe.3G091800 Prunus persica HOM05D003206 ORTHO05D005207 7.7e-09 63.9 38 78.9
RcHm_v2.0_Chr2g0134571 Rosa chinensis HOM05D003206 ORTHO05D005207 7.7e-09 63.9 38 78.9
FvH4_6g29330 Fragaria vesca HOM05D003206 ORTHO05D005207 1.0e-08 63.5 38 76.3
FAN02G2065 Fragaria x ananassa HOM05D003206 ORTHO05D005207 1.0e-08 63.5 38 76.3
FAN02G2439 Fragaria x ananassa HOM05D003206 ORTHO05D005207 1.0e-08 63.5 38 76.3
FAN05G2875 Fragaria x ananassa HOM05D003206 ORTHO05D005207 1.0e-08 63.5 38 76.3
FAN09G0310 Fragaria x ananassa HOM05D003206 ORTHO05D005207 1.0e-08 63.5 38 76.3
FAN14G4723 Fragaria x ananassa HOM05D003206 ORTHO05D005207 1.0e-08 63.5 38 76.3
vmacro19016 Vaccinium macrocarpon HOM05D003206 ORTHO05D005207 1.0e-08 63.5 38 78.9
Cc04_g04590 Coffea canephora HOM05D003206 ORTHO05D005207 1.3e-08 63.2 37 81.1
Hma1.2p1_0461F.1_g157780 Hydrangea macrophylla HOM05D003206 ORTHO05D005207 1.3e-08 63.2 38 78.9
GSVIVG01017422001 Vitis vinifera HOM05D003206 ORTHO05D005207 1.7e-08 62.8 38 78.9
BcaC03g15965 Brassica carinata HOM05D003206 ORTHO05D005207 2.2e-08 62.4 38 76.3
A02p23540 Brassica napus HOM05D003206 ORTHO05D005207 2.2e-08 62.4 38 76.3
C02p37310 Brassica napus HOM05D003206 ORTHO05D005207 2.2e-08 62.4 38 76.3
BolC2t09741H Brassica oleracea HOM05D003206 ORTHO05D005207 2.2e-08 62.4 38 76.3
BraA02t07347Z Brassica rapa HOM05D003206 ORTHO05D005207 2.2e-08 62.4 38 76.3
PSO017G7051 Papaver somniferum HOM05D003206 ORTHO05D005207 2.2e-08 62.4 38 76.3
PSO170G1430 Papaver somniferum HOM05D003206 ORTHO05D005207 2.2e-08 62.4 38 76.3
Thecc.06G031800 Theobroma cacao HOM05D003206 ORTHO05D005207 2.2e-08 62.4 38 76.3
Lsat_1_v5_gn_8_93800 Lactuca sativa HOM05D003206 ORTHO05D024104 2.9e-08 62.0 38 76.3
Nn2g12167 Nelumbo nucifera HOM05D003206 ORTHO05D005207 2.9e-08 62.0 38 78.9
Rhsim08G0211000 Rhododendron simsii HOM05D003206 ORTHO05D005207 2.9e-08 62.0 38 78.9
AL2G41040 Arabidopsis lyrata HOM05D003206 ORTHO05D005207 3.8e-08 61.6 38 73.7
AT1G80460 Arabidopsis thaliana HOM05D003206 ORTHO05D005207 3.8e-08 61.6 38 73.7
BcaB02g07269 Brassica carinata HOM05D003206 ORTHO05D005207 3.8e-08 61.6 38 73.7
BcaB02g08684 Brassica carinata HOM05D003206 ORTHO05D005207 3.8e-08 61.6 38 73.7
BcaC08g45315 Brassica carinata HOM05D003206 ORTHO05D005207 3.8e-08 61.6 38 73.7
A07p26680 Brassica napus HOM05D003206 ORTHO05D005207 3.8e-08 61.6 38 73.7
A07p45230 Brassica napus HOM05D003206 ORTHO05D005207 3.8e-08 61.6 38 73.7
C06p29160 Brassica napus HOM05D003206 ORTHO05D005207 3.8e-08 61.6 38 73.7
C06p54070 Brassica napus HOM05D003206 ORTHO05D005207 3.8e-08 61.6 38 73.7
BolC6t38080H Brassica oleracea HOM05D003206 ORTHO05D005207 3.8e-08 61.6 38 73.7
BolC6t40420H Brassica oleracea HOM05D003206 ORTHO05D005207 3.8e-08 61.6 38 73.7
BraA07t30311Z Brassica rapa HOM05D003206 ORTHO05D005207 3.8e-08 61.6 38 73.7
BraA07t32026Z Brassica rapa HOM05D003206 ORTHO05D005207 3.8e-08 61.6 38 73.7
Carub.0002s2712 Capsella rubella HOM05D003206 ORTHO05D005207 3.8e-08 61.6 38 73.7
ClCG09G003080 Citrullus lanatus HOM05D003206 ORTHO05D005207 3.8e-08 61.6 38 76.3
COL.COLO4_11866 Corchorus olitorius HOM05D003206 ORTHO05D005207 3.8e-08 61.6 38 73.7
Thhalv10018399m.g Eutrema salsugineum HOM05D003206 ORTHO05D005207 3.8e-08 61.6 38 73.7
HanXRQChr02g0034821 Helianthus annuus HOM05D003206 ORTHO05D005207 3.8e-08 61.6 38 76.3
Sp5g35360 Schrenkiella parvula HOM05D003206 ORTHO05D005207 3.8e-08 61.6 38 73.7
TPR.G38649 Trifolium pratense HOM05D003206 ORTHO05D005207 3.8e-08 61.6 38 76.3
CAN.G407.13 Capsicum annuum HOM05D003206 ORTHO05D005207 5.0e-08 61.2 38 76.3
Haze_12952 Corylus avellana HOM05D003206 ORTHO05D005207 5.0e-08 61.2 38 76.3
Dinv38137 Davidia involucrata HOM05D003206 ORTHO05D005207 5.0e-08 61.2 38 71.1
Glyma.07G028600 Glycine max HOM05D003206 ORTHO05D005207 5.0e-08 61.2 38 73.7
TAR626G1759 Trochodendron aralioides HOM05D003206 ORTHO05D005207 5.0e-08 61.2 38 73.7
VMungo0331G1864 Vigna mungo HOM05D003206 ORTHO05D005207 5.0e-08 61.2 38 73.7
Aqoxy133s002 Aquilegia oxysepala HOM05D003206 ORTHO05D017170 6.5e-08 60.8 38 73.7
Aqoxy7G03604 Aquilegia oxysepala HOM05D003206 ORTHO05D005207 6.5e-08 60.8 38 73.7
Lsat_1_v5_gn_5_8920 Lactuca sativa HOM05D003206 ORTHO05D005207 6.5e-08 60.8 38 73.7
Lj5A75T45 Lonicera japonica HOM05D003206 ORTHO05D005207 6.5e-08 60.8 38 76.3
Lj3g0014011 Lotus japonicus HOM05D003206 ORTHO05D005207 6.5e-08 60.8 38 73.7
MBI14_g04912_MAGBIO Magnolia biondii HOM05D003206 ORTHO05D005207 6.5e-08 60.8 38 76.3
Manes.11G060600 Manihot esculenta HOM05D003206 ORTHO05D005207 6.5e-08 60.8 38 76.3
Oeu004214.1 Olea europaea HOM05D003206 ORTHO05D005207 6.5e-08 60.8 38 76.3
arahy.Tifrunner.gnm1.ann1.TT8CUF Arachis hypogaea HOM05D003206 ORTHO05D005207 8.5e-08 60.5 38 71.1
arahy.Tifrunner.gnm1.ann1.ZMG720 Arachis hypogaea HOM05D003206 ORTHO05D005207 8.5e-08 60.5 38 71.1
EL10Ac9g21895 Beta vulgaris HOM05D003206 ORTHO05D005207 8.5e-08 60.5 38 73.7
BcaB05g25268 Brassica carinata HOM05D003206 ORTHO05D005207 8.5e-08 60.5 38 73.7
AUR62011496 Chenopodium quinoa HOM05D003206 ORTHO05D005207 8.5e-08 60.5 38 73.7
AUR62016312 Chenopodium quinoa HOM05D003206 ORTHO05D005207 8.5e-08 60.5 38 73.7
DCAR_016275 Daucus carota HOM05D003206 ORTHO05D005207 8.5e-08 60.5 38 78.9
TWI12G0864 Tripterygium wilfordii HOM05D003206 ORTHO05D005207 8.5e-08 60.5 38 73.7
MSTRG.4700 Avicennia marina HOM05D003206 ORTHO05D005207 1.1e-07 60.1 38 73.7
CDE02G1563 Ceratophyllum demersum HOM05D003206 ORTHO05D005207 1.1e-07 60.1 38 73.7
MELO3C023442.2 Cucumis melo HOM05D003206 ORTHO05D005207 1.1e-07 60.1 38 73.7
CsaV3_7G032210 Cucumis sativus L. HOM05D003206 ORTHO05D005207 1.1e-07 60.1 38 73.7
Sed0019835 Sechium edule HOM05D003206 ORTHO05D005207 1.1e-07 60.1 38 73.7
Solyc03g117490.4 Solanum lycopersicum HOM05D003206 ORTHO05D005207 1.1e-07 60.1 38 73.7
Sopen03g036390 Solanum pennellii HOM05D003206 ORTHO05D005207 1.1e-07 60.1 38 73.7
PGSC0003DMG400014144 Solanum tuberosum HOM05D003206 ORTHO05D005207 1.1e-07 60.1 38 73.7
unitig_27.g24951 Utricularia gibba HOM05D003206 ORTHO05D017170 1.1e-07 60.1 38 71.1
Ca_12518_v3 Cicer arietinum L. HOM05D003206 ORTHO05D005207 1.5e-07 59.7 38 71.1
Lsat_1_v5_gn_1_31380 Lactuca sativa HOM05D003206 ORTHO05D005207 1.5e-07 59.7 38 71.1
Oeu018801.1 Olea europaea HOM05D003206 ORTHO05D005207 1.5e-07 59.7 38 73.7
PGR102G2366 Punica granatum HOM05D003206 ORTHO05D005207 1.5e-07 59.7 37 70.3
SalBow6G0819 Salvia bowleyana HOM05D003206 ORTHO05D005207 1.5e-07 59.7 38 73.7
Atru.chr1.2868 Acer truncatum HOM05D003206 ORTHO05D005207 1.9e-07 59.3 38 71.1
CARHR074790 Cardamine hirsuta HOM05D003206 ORTHO05D005207 1.9e-07 59.3 38 68.4
Dinv30630 Davidia involucrata HOM05D003206 ORTHO05D005207 1.9e-07 59.3 38 73.7
Lalb_Chr01g0012271 Lupinus albus HOM05D003206 ORTHO05D005207 1.9e-07 59.3 38 71.1
Medtr4g009920 Medicago truncatula HOM05D003206 ORTHO05D005207 1.9e-07 59.3 38 71.1
THA.LOC104812468 Tarenaya hassleriana HOM05D003206 ORTHO05D005207 1.9e-07 59.3 38 71.1
CDE04G3165 Ceratophyllum demersum HOM05D003206 ORTHO05D005207 2.5e-07 58.9 38 73.7
Lalb_Chr25g0279091 Lupinus albus HOM05D003206 ORTHO05D005207 2.5e-07 58.9 38 71.1
QL05p032185 Quercus lobata HOM05D003206 ORTHO05D005207 2.5e-07 58.9 38 73.7
Hund06548 Selenicereus undatus HOM05D003206 ORTHO05D005207 2.5e-07 58.9 38 71.1
TAR383G0666 Trochodendron aralioides HOM05D003206 ORTHO05D005207 2.5e-07 58.9 38 68.4
MSTRG.11155 Avicennia marina HOM05D003206 ORTHO05D005207 3.2e-07 58.5 38 71.1
FAN02G3805 Fragaria x ananassa HOM05D003206 ORTHO05D005207 3.2e-07 58.5 38 71.1
Os04g0647800 Oryza sativa ssp. japonica HOM05D003206 ORTHO05D005207 3.2e-07 58.5 38 71.1
TPR.G38684 Trifolium pratense HOM05D003206 ORTHO05D005207 3.2e-07 58.5 38 68.4
Ciclev10025756m.g Citrus clementina HOM05D003206 ORTHO05D005207 4.2e-07 58.2 43 67.4
Phvul.010G157400 Phaseolus vulgaris HOM05D003206 ORTHO05D005207 4.2e-07 58.2 37 70.3
Sabra03G0017400 Salix brachista HOM05D003206 ORTHO05D005207 5.5e-07 57.8 38 71.1
SGA_v2.0_scaffold5G02725 Striga asiatica HOM05D003206 ORTHO05D005207 5.5e-07 57.8 38 73.7
TPR.G12167 Trifolium pratense HOM05D003206 ORTHO05D005207 5.5e-07 57.8 38 73.7
ATR0767G098 Amborella trichopoda HOM05D003206 ORTHO05D005207 7.2e-07 57.4 38 73.7
ATR0810G084 Amborella trichopoda HOM05D003206 ORTHO05D017170 7.2e-07 57.4 38 71.1
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 7.2e-07 57.4 38 71.1
Migut.I00744 Erythranthe guttata HOM05D003206 ORTHO05D005207 7.2e-07 57.4 37 73.0
Aa31LG4G720 Aethionema arabicum HOM05D003206 ORTHO05D005207 9.4e-07 57.0 38 68.4
Duzib235G0619 Durio zibethinus HOM05D003206 ORTHO05D005207 9.4e-07 57.0 38 71.1
FAN09G0009 Fragaria x ananassa HOM05D003206 ORTHO05D005207 1.2e-06 56.6 38 68.4
Psat7g257640 Pisum sativum HOM05D003206 ORTHO05D005207 1.2e-06 56.6 38 68.4
Aqoxy7G03605 Aquilegia oxysepala HOM05D003206 ORTHO05D017170 2.1e-06 55.8 38 65.8
Potri.003G030900 Populus trichocarpa HOM05D003206 ORTHO05D005207 2.1e-06 55.8 38 65.8
FvH4_6g29340 Fragaria vesca HOM05D003206 ORTHO05D005207 2.7e-06 55.5 38 65.8
CSS0005656 Camellia sinensis var. sinensis HOM05D003206 ORTHO05D017170 6.1e-06 54.3 32 81.2
HPP92_026428 Vanilla planifolia HOM05D003206 ORTHO05D005207 6.1e-06 54.3 38 65.8
Aqoxy7G02449 Aquilegia oxysepala HOM05D003206 ORTHO05D005207 8.0e-06 53.9 39 71.8


User provided reference genes

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