Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004587 Camellia sinensis var. sinensis HOM05D002304 ORTHO05D002363 1.9e-126 456.1 261 100.0
Actinidia34006 Actinidia chinensis HOM05D002304 ORTHO05D002363 2.9e-71 272.7 219 71.2
Actinidia09607 Actinidia chinensis HOM05D002304 ORTHO05D002363 8.5e-63 244.6 195 71.3
Dinv09218 Davidia involucrata HOM05D002304 ORTHO05D002363 8.8e-60 234.6 218 64.2
CSS0042081 Camellia sinensis var. sinensis HOM05D002304 ORTHO05D002363 1.1e-46 191.0 205 60.5
vmacro16079 Vaccinium macrocarpon HOM05D002304 ORTHO05D002363 4.0e-44 182.6 282 53.5
Hma1.2p1_0459F.1_g157130 Hydrangea macrophylla HOM05D002304 ORTHO05D002363 5.7e-43 178.7 262 60.3
PGSC0003DMG400006479 Solanum tuberosum HOM05D002304 ORTHO05D002363 5.9e-40 168.7 178 56.2
CAN.G302.5 Capsicum annuum HOM05D002304 ORTHO05D002363 2.3e-39 166.8 271 53.5
Rhsim12G0098700 Rhododendron simsii HOM05D002304 ORTHO05D002363 1.1e-38 164.5 243 48.6
Nitab4.5_0001408g0050 Nicotiana tabacum HOM05D002304 ORTHO05D002363 5.6e-38 162.2 273 48.0
Haze_12481 Corylus avellana HOM05D002304 ORTHO05D002363 7.3e-38 161.8 199 55.3
Sopen05g018410 Solanum pennellii HOM05D002304 ORTHO05D002363 2.8e-37 159.8 246 48.8
Nitab4.5_0000060g0010 Nicotiana tabacum HOM05D002304 ORTHO05D002363 8.0e-37 158.3 269 50.2
Peaxi162Scf00128g01713 Petunia axillaris HOM05D002304 ORTHO05D002363 2.9e-34 149.8 232 45.3
QL03p049930 Quercus lobata HOM05D002304 ORTHO05D002363 1.1e-33 147.9 230 46.5
CiPaw.05G103300 Carya illinoinensis HOM05D002304 ORTHO05D002363 7.8e-32 141.7 196 51.5
CiPaw.06G108100 Carya illinoinensis HOM05D002304 ORTHO05D002363 1.0e-31 141.4 198 52.5
SalBow2G2147 Salvia bowleyana HOM05D002304 ORTHO05D002363 1.9e-30 137.1 171 52.6
Manes.08G102500 Manihot esculenta HOM05D002304 ORTHO05D002363 2.5e-30 136.7 194 51.0
Manes.09G186400 Manihot esculenta HOM05D002304 ORTHO05D002363 4.3e-30 136.0 192 50.5
TWI75G1229 Tripterygium wilfordii HOM05D002304 ORTHO05D002363 7.3e-30 135.2 200 46.5
Atru.chr11.2414 Acer truncatum HOM05D002304 ORTHO05D002363 9.5e-30 134.8 185 49.2
TAR622G0025 Trochodendron aralioides HOM05D002304 ORTHO05D002363 9.5e-30 134.8 313 39.0
Cc00_g28550 Coffea canephora HOM05D002304 ORTHO05D002363 4.7e-29 132.5 233 41.6
Oeu058898.1 Olea europaea HOM05D002304 ORTHO05D002363 4.7e-29 132.5 233 44.2
TWI18G0895 Tripterygium wilfordii HOM05D002304 ORTHO05D002363 1.8e-28 130.6 200 47.0
Ciclev10031840m.g Citrus clementina HOM05D002304 ORTHO05D002363 3.1e-28 129.8 187 49.2
TAR371G0481 Trochodendron aralioides HOM05D002304 ORTHO05D002363 1.5e-27 127.5 303 37.6
TAR374G0191 Trochodendron aralioides HOM05D002304 ORTHO05D002363 2.0e-27 127.1 316 37.3
unitig_749.g13329 Utricularia gibba HOM05D002304 ORTHO05D002363 5.8e-27 125.6 188 45.7
MSTRG.464 Avicennia marina HOM05D002304 ORTHO05D002363 2.2e-26 123.6 181 46.4
CANSAT01G2027 Cannabis sativa HOM05D002304 ORTHO05D002363 4.9e-26 122.5 165 49.7
Oeu003274.1 Olea europaea HOM05D002304 ORTHO05D002363 7.8e-24 115.2 146 51.4
Nn4g22185 Nelumbo nucifera HOM05D002304 ORTHO05D002363 1.7e-23 114.0 280 36.4
unitig_26.g10424 Utricularia gibba HOM05D002304 ORTHO05D002363 3.0e-23 113.2 227 39.2
Migut.K01040 Erythranthe guttata HOM05D002304 ORTHO05D002363 5.0e-23 112.5 231 38.5
MD16G1128400 Malus domestica HOM05D002304 ORTHO05D002363 5.6e-22 109.0 187 43.3
Potri.001G062800 Populus trichocarpa HOM05D002304 ORTHO05D002363 1.2e-21 107.8 197 42.6
ClCG06G018240 Citrullus lanatus HOM05D002304 ORTHO05D002363 1.6e-21 107.5 224 39.7
Sc22g0003530 Simmondsia chinensis HOM05D002304 ORTHO05D002363 2.8e-21 106.7 222 39.2
MELO3C026174.2 Cucumis melo HOM05D002304 ORTHO05D002363 8.1e-21 105.1 237 38.4
CsaV3_1G000210 Cucumis sativus L. HOM05D002304 ORTHO05D002363 1.8e-20 104.0 238 38.2
Potri.003G164600 Populus trichocarpa HOM05D002304 ORTHO05D002363 1.8e-20 104.0 173 44.5
Sabra03G0119800 Salix brachista HOM05D002304 ORTHO05D002363 1.8e-20 104.0 231 39.8
Prupe.5G144600 Prunus persica HOM05D002304 ORTHO05D002363 3.1e-20 103.2 246 41.1
TAR629G2925 Trochodendron aralioides HOM05D002304 ORTHO05D002363 3.1e-20 103.2 261 38.3
SGA_v2.0_scaffold87G27185 Striga asiatica HOM05D002304 ORTHO05D002363 5.2e-20 102.4 182 42.3
Sabra01G0045200 Salix brachista HOM05D002304 ORTHO05D002363 6.8e-20 102.1 201 40.8
MD06G1133400 Malus domestica HOM05D002304 ORTHO05D002363 1.2e-19 101.3 243 41.6
Eucgr.G01957 Eucalyptus grandis HOM05D002304 ORTHO05D002363 1.5e-19 100.9 214 43.0
Glyma.05G201800 Glycine max HOM05D002304 ORTHO05D002363 2.0e-19 100.5 305 35.1
Solyc05g023820.3 Solanum lycopersicum HOM05D002304 ORTHO05D002363 2.6e-19 100.1 147 47.6
FvH4_5g09120 Fragaria vesca HOM05D002304 ORTHO05D002363 3.4e-19 99.8 221 39.8
Dinv11217 Davidia involucrata HOM05D002304 ORTHO05D002363 7.5e-19 98.6 211 44.1
THA.LOC104824608 Tarenaya hassleriana HOM05D002304 ORTHO05D002363 9.8e-19 98.2 201 39.8
MD13G1128000 Malus domestica HOM05D002304 ORTHO05D002363 2.2e-18 97.1 237 35.4
Aqoxy5G03200 Aquilegia oxysepala HOM05D002304 ORTHO05D002363 3.7e-18 96.3 245 38.0
Glyma.08G258000 Glycine max HOM05D002304 ORTHO05D002363 4.9e-18 95.9 211 38.9
Phvul.002G283300 Phaseolus vulgaris HOM05D002304 ORTHO05D002363 6.4e-18 95.5 242 37.2
MD14G1149800 Malus domestica HOM05D002304 ORTHO05D002363 8.3e-18 95.1 228 41.7
Phvul.008G018900 Phaseolus vulgaris HOM05D002304 ORTHO05D002363 8.3e-18 95.1 208 38.0
VMungo1383G0264 Vigna mungo HOM05D002304 ORTHO05D002363 8.3e-18 95.1 210 39.0
Glyma.18G282400 Glycine max HOM05D002304 ORTHO05D002363 1.4e-17 94.4 211 37.0
VMungo0251G1409 Vigna mungo HOM05D002304 ORTHO05D002363 1.4e-17 94.4 241 36.9
Dinv23200 Davidia involucrata HOM05D002304 ORTHO05D002363 1.9e-17 94.0 215 39.5
FAN13G2498 Fragaria x ananassa HOM05D002304 ORTHO05D002363 1.9e-17 94.0 217 40.1
Glyma.08G009200 Glycine max HOM05D002304 ORTHO05D002363 3.2e-17 93.2 239 38.5
FAN08G1941 Fragaria x ananassa HOM05D002304 ORTHO05D002363 5.4e-17 92.4 227 38.8
Manes.14G046500 Manihot esculenta HOM05D002304 ORTHO05D002363 9.2e-17 91.7 236 36.0
RcHm_v2.0_Chr4g0429181 Rosa chinensis HOM05D002304 ORTHO05D002363 9.2e-17 91.7 166 42.2
FAN18G4021 Fragaria x ananassa HOM05D002304 ORTHO05D002363 1.2e-16 91.3 228 38.2
RcHm_v2.0_Chr7g0189071 Rosa chinensis HOM05D002304 ORTHO05D002363 1.2e-16 91.3 224 41.1
FvH4_4g22930 Fragaria vesca HOM05D002304 ORTHO05D002363 2.1e-16 90.5 164 44.5
FAN12G0561 Fragaria x ananassa HOM05D002304 ORTHO05D002363 2.1e-16 90.5 164 44.5
Ca_17577_v3 Cicer arietinum L. HOM05D002304 ORTHO05D002363 6.0e-16 89.0 244 36.5
FAN17G3093 Fragaria x ananassa HOM05D000011 ORTHO05D000018 6.0e-16 89.0 172 43.0
FAN04G1150 Fragaria x ananassa HOM05D002304 ORTHO05D002363 7.8e-16 88.6 231 37.7
CSS0038490 Camellia sinensis var. sinensis HOM05D002304 ORTHO05D002363 1.0e-15 88.2 200 39.0
Cpa.g.sc4.114 Carica papaya HOM05D002304 ORTHO05D002363 1.0e-15 88.2 240 40.0
Manes.06G125000 Manihot esculenta HOM05D002304 ORTHO05D002363 2.3e-15 87.0 248 35.5
CiPaw.11G002000 Carya illinoinensis HOM05D002304 ORTHO05D002363 3.9e-15 86.3 238 34.0
PGR044G0596 Punica granatum HOM05D002304 ORTHO05D002363 6.6e-15 85.5 213 38.5
Ca_07089_v3 Cicer arietinum L. HOM05D002304 ORTHO05D002363 1.5e-14 84.3 203 36.9
Hma1.2p1_0093F.1_g047040 Hydrangea macrophylla HOM05D002304 ORTHO05D002363 1.5e-14 84.3 203 38.4
Aqoxy5G03199 Aquilegia oxysepala HOM05D002304 ORTHO05D002363 1.9e-14 84.0 251 36.3
CANSAT80G0059 Cannabis sativa HOM05D002304 ORTHO05D002363 2.5e-14 83.6 226 33.6
CANSAT80G1450 Cannabis sativa HOM05D002304 ORTHO05D002363 2.5e-14 83.6 226 33.6
Ca_16079_v3 Cicer arietinum L. HOM05D002304 ORTHO05D002363 3.3e-14 83.2 158 39.2
Gohir.A03G055000 Gossypium hirsutum HOM05D002304 ORTHO05D002363 3.3e-14 83.2 169 38.5
Gohir.D03G111900 Gossypium hirsutum HOM05D002304 ORTHO05D002363 3.3e-14 83.2 169 38.5
Gorai.003G118200 Gossypium raimondii HOM05D002304 ORTHO05D002363 5.6e-14 82.4 169 38.5
Ah.03g135680 Amaranthus hybridus HOM05D002304 ORTHO05D002363 1.2e-13 81.3 220 40.0
Hma1.2p1_0168F.1_g074140 Hydrangea macrophylla HOM05D002304 ORTHO05D002363 1.2e-13 81.3 201 40.3
MBI07_g40355_MAGBIO Magnolia biondii HOM05D002304 ORTHO05D002363 3.6e-13 79.7 211 35.5
Phvul.009G163900 Phaseolus vulgaris HOM05D002304 ORTHO05D002363 6.2e-13 79.0 147 44.9
Glyma.04G199700 Glycine max HOM05D002304 ORTHO05D002363 1.8e-12 77.4 155 41.9
TPR.G36352 Trifolium pratense HOM05D002304 ORTHO05D002363 1.8e-12 77.4 214 36.0
Gorai.006G272900 Gossypium raimondii HOM05D002304 ORTHO05D002363 2.3e-12 77.0 203 37.4
Lj4g0003672 Lotus japonicus HOM05D002304 ORTHO05D002363 2.3e-12 77.0 247 33.6
Medtr8g099820 Medicago truncatula HOM05D002304 ORTHO05D002363 2.3e-12 77.0 205 36.6
GSVIVG01008623001 Vitis vinifera HOM05D002304 ORTHO05D002363 2.3e-12 77.0 168 36.9
Gohir.D09G248600 Gossypium hirsutum HOM05D002304 ORTHO05D002363 3.1e-12 76.6 203 37.4
Psat7g038560 Pisum sativum HOM05D002304 ORTHO05D002363 3.1e-12 76.6 218 36.2
Oeu055476.1 Olea europaea HOM05D002304 ORTHO05D002363 6.8e-12 75.5 145 38.6
TPR.G21591 Trifolium pratense HOM05D002304 ORTHO05D002363 6.8e-12 75.5 168 37.5
Eucgr.K02200 Eucalyptus grandis HOM05D002304 ORTHO05D002363 1.2e-11 74.7 214 32.2
Gohir.D11G041200 Gossypium hirsutum HOM05D002304 ORTHO05D002363 1.2e-11 74.7 207 35.3
Sabra12G0077100 Salix brachista HOM05D002304 ORTHO05D002363 1.2e-11 74.7 232 35.8
TPR.G2933 Trifolium pratense HOM05D002304 ORTHO05D002363 1.2e-11 74.7 172 36.0
Psat3g189240 Pisum sativum HOM05D002304 ORTHO05D002363 1.5e-11 74.3 146 35.6
Cfa018728 Carpinus fangiana HOM05D002304 ORTHO05D002363 2.0e-11 73.9 238 33.6
Gohir.A09G247800 Gossypium hirsutum HOM05D002304 ORTHO05D002363 2.6e-11 73.6 209 37.3
Gorai.007G044300 Gossypium raimondii HOM05D002304 ORTHO05D002363 2.6e-11 73.6 207 34.8
AUR62028858 Chenopodium quinoa HOM05D002304 ORTHO05D002363 4.4e-11 72.8 206 38.3
Ciclev10032137m.g Citrus clementina HOM05D002304 ORTHO05D002363 4.4e-11 72.8 227 33.5
DCAR_007514 Daucus carota HOM05D002304 ORTHO05D002363 4.4e-11 72.8 151 37.7
MD13G1128300 Malus domestica HOM05D002304 ORTHO05D002363 4.4e-11 72.8 145 36.6
PSO017G6198 Papaver somniferum HOM05D002304 ORTHO05D002363 4.4e-11 72.8 268 32.8
Atru.chr6.1893 Acer truncatum HOM05D002304 ORTHO05D002363 5.8e-11 72.4 242 33.5
Medtr3g498865 Medicago truncatula HOM05D002304 ORTHO05D002363 5.8e-11 72.4 151 39.7
THA.LOC104821531 Tarenaya hassleriana HOM05D002304 ORTHO05D002363 9.9e-11 71.6 188 37.8
EL10Ac6g13591 Beta vulgaris HOM05D002304 ORTHO05D002363 2.2e-10 70.5 113 46.0
Potri.012G104700 Populus trichocarpa HOM05D002304 ORTHO05D002363 2.2e-10 70.5 238 35.7
Duzib068G0017 Durio zibethinus HOM05D002304 ORTHO05D002363 2.9e-10 70.1 190 37.9
Hund02484 Selenicereus undatus HOM05D002304 ORTHO05D002363 3.8e-10 69.7 197 33.5
Hund25504 Selenicereus undatus HOM05D002304 ORTHO05D002363 3.8e-10 69.7 154 42.9
Lj1g0001094 Lotus japonicus HOM05D002304 ORTHO05D002363 6.4e-10 68.9 173 36.4
Actinidia08898 Actinidia chinensis HOM05D002304 ORTHO05D002363 8.4e-10 68.6 185 37.3
Haze_07120 Corylus avellana HOM05D002304 ORTHO05D002363 8.4e-10 68.6 237 33.3
Duzib205G0973 Durio zibethinus HOM05D002304 ORTHO05D002363 1.9e-09 67.4 227 34.8
TWI23G0131 Tripterygium wilfordii HOM05D002304 ORTHO05D002363 2.4e-09 67.0 201 39.8
Thecc.03G137800 Theobroma cacao HOM05D002304 ORTHO05D002363 3.2e-09 66.6 232 35.8
Lalb_Chr07g0183691 Lupinus albus HOM05D002304 ORTHO05D002363 4.1e-09 66.2 178 35.4
TWI39G0786 Tripterygium wilfordii HOM05D002304 ORTHO05D002363 4.1e-09 66.2 218 36.2
Gohir.D07G052000 Gossypium hirsutum HOM05D002304 ORTHO05D002363 5.4e-09 65.9 180 31.7
Gorai.001G055000 Gossypium raimondii HOM05D002304 ORTHO05D002363 5.4e-09 65.9 180 31.7
Gorai.008G209700 Gossypium raimondii HOM05D002304 ORTHO05D002363 5.4e-09 65.9 224 33.9
Gohir.A07G047700 Gossypium hirsutum HOM05D002304 ORTHO05D002363 9.2e-09 65.1 180 32.2
Psat5g054200 Pisum sativum HOM05D002304 ORTHO05D002363 9.2e-09 65.1 159 39.0
TWI14G0346 Tripterygium wilfordii HOM05D002304 ORTHO05D002363 9.2e-09 65.1 191 39.3
CDE09G0951 Ceratophyllum demersum HOM05D002304 ORTHO05D002363 1.2e-08 64.7 241 33.2
Gohir.D12G195000 Gossypium hirsutum HOM05D002304 ORTHO05D002363 1.2e-08 64.7 226 33.2
Medtr7g021220 Medicago truncatula HOM05D002304 ORTHO05D002363 1.6e-08 64.3 167 32.9
Gohir.A12G192900 Gossypium hirsutum HOM05D002304 ORTHO05D002363 2.1e-08 63.9 226 32.7
Aa31LG4G17340 Aethionema arabicum HOM05D002304 ORTHO05D002363 2.7e-08 63.5 183 36.1
vmacro16745 Vaccinium macrocarpon HOM05D002304 ORTHO05D002363 2.7e-08 63.5 212 35.8
Glyma.06G165800 Glycine max HOM05D002304 ORTHO05D002363 3.5e-08 63.2 162 37.0
Lj1g0025612 Lotus japonicus HOM05D002304 ORTHO05D002363 4.6e-08 62.8 197 34.0
Lalb_Chr07g0183711 Lupinus albus HOM05D002304 ORTHO05D002363 7.8e-08 62.0 211 31.8
BcaB01g00778 Brassica carinata HOM05D002304 ORTHO05D002363 2.3e-07 60.5 142 34.5
BraA01t02431Z Brassica rapa HOM05D002304 ORTHO05D002363 2.3e-07 60.5 158 36.1
AUR62005698 Chenopodium quinoa HOM05D002304 ORTHO05D002363 2.3e-07 60.5 60 58.3
PGR119G0501 Punica granatum HOM05D002304 ORTHO05D002363 2.3e-07 60.5 179 36.3
BcaC09g49903 Brassica carinata HOM05D002304 ORTHO05D002363 3.9e-07 59.7 125 40.8
C01p31480 Brassica napus HOM05D002304 ORTHO05D002363 3.9e-07 59.7 125 40.8
BolC1t03082H Brassica oleracea HOM05D002304 ORTHO05D002363 3.9e-07 59.7 125 40.8
A01p25210 Brassica napus HOM05D002304 ORTHO05D002363 5.1e-07 59.3 158 35.4
CARHR189880 Cardamine hirsuta HOM05D002304 ORTHO05D002363 5.1e-07 59.3 177 36.7
CARHR157610 Cardamine hirsuta HOM05D002304 ORTHO05D002363 6.6e-07 58.9 213 35.7
COL.COLO4_16694 Corchorus olitorius HOM05D002304 ORTHO05D002363 6.6e-07 58.9 194 32.0
Lsat_1_v5_gn_1_32321 Lactuca sativa HOM05D002304 ORTHO05D002363 1.1e-06 58.2 203 34.0
Duzib084G0534 Durio zibethinus HOM05D002304 ORTHO05D002363 1.9e-06 57.4 189 32.8
Lsat_1_v5_gn_5_10720 Lactuca sativa HOM05D002304 ORTHO05D002363 1.9e-06 57.4 195 32.3
PSO478G4492 Papaver somniferum HOM05D002304 ORTHO05D002363 2.5e-06 57.0 245 33.1
CDE02G4310 Ceratophyllum demersum HOM05D002304 ORTHO05D002363 3.3e-06 56.6 199 31.7
Sp2g23550 Schrenkiella parvula HOM05D002304 ORTHO05D002363 4.3e-06 56.2 230 34.8
PSO478G4482 Papaver somniferum HOM05D002304 ORTHO05D002363 7.3e-06 55.5 162 35.8


User provided reference genes

Program Settings