Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004577 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 1.4e-270 935.6 466 100.0
CSS0007070 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 1.6e-266 922.2 466 98.7
Dinv36732 Davidia involucrata HOM05D005294 ORTHO05D006720 5.5e-214 747.7 462 80.1
Actinidia39748 Actinidia chinensis HOM05D005294 ORTHO05D006720 3.4e-211 738.4 468 80.1
Rhsim05G0031400 Rhododendron simsii HOM05D005294 ORTHO05D006720 4.2e-206 721.5 466 79.2
Lj7C671G8 Lonicera japonica HOM05D005294 ORTHO05D006720 1.3e-199 699.9 461 75.1
vmacro10822 Vaccinium macrocarpon HOM05D005294 ORTHO05D006720 4.2e-198 694.9 500 72.6
Haze_25869 Corylus avellana HOM05D005294 ORTHO05D006720 2.9e-186 655.6 461 70.3
Potri.013G068200 Populus trichocarpa HOM05D005294 ORTHO05D006720 3.5e-184 648.7 461 69.2
Ciclev10008203m.g Citrus clementina HOM05D005294 ORTHO05D006720 7.8e-184 647.5 459 68.2
Nitab4.5_0004011g0060 Nicotiana tabacum HOM05D005294 ORTHO05D006720 1.0e-183 647.1 460 68.7
QL02p063470 Quercus lobata HOM05D005294 ORTHO05D006720 1.9e-182 642.9 461 68.5
CiPaw.03G219800 Carya illinoinensis HOM05D005294 ORTHO05D006720 6.2e-181 637.9 462 67.7
Atru.chr7.1522 Acer truncatum HOM05D005294 ORTHO05D006720 3.4e-179 632.1 465 65.6
Cfa003134 Carpinus fangiana HOM05D005294 ORTHO05D006720 2.9e-178 629.0 461 68.3
GSVIVG01015248001 Vitis vinifera HOM05D005294 ORTHO05D006720 8.3e-178 627.5 465 66.2
Nitab4.5_0001492g0020 Nicotiana tabacum HOM05D005294 ORTHO05D006720 2.4e-177 625.9 462 66.7
Manes.16G105100 Manihot esculenta HOM05D005294 ORTHO05D006720 9.2e-177 624.0 463 66.3
Sabra13G0059500 Salix brachista HOM05D005294 ORTHO05D006720 2.1e-176 622.9 513 62.0
TWI34G0876 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 1.9e-174 616.3 461 65.7
DCAR_012006 Daucus carota HOM05D005294 ORTHO05D006720 4.3e-174 615.1 461 65.9
Sc08g0008210 Simmondsia chinensis HOM05D005294 ORTHO05D006720 5.6e-174 614.8 460 65.0
PGSC0003DMG400033362 Solanum tuberosum HOM05D005294 ORTHO05D006720 8.1e-173 610.9 461 65.3
TAR624G1381 Trochodendron aralioides HOM05D005294 ORTHO05D006720 8.1e-173 610.9 461 65.3
CAN.G142.7 Capsicum annuum HOM05D005294 ORTHO05D006720 1.1e-172 610.5 461 65.3
COL.COLO4_18242 Corchorus olitorius HOM05D005294 ORTHO05D006720 2.6e-171 605.9 469 62.9
Cpa.g.sc32.101 Carica papaya HOM05D005294 ORTHO05D006720 3.7e-170 602.1 453 64.5
Lsat_1_v5_gn_5_146040 Lactuca sativa HOM05D005294 ORTHO05D006720 1.9e-169 599.7 462 63.4
CANSAT64G1758 Cannabis sativa HOM05D005294 ORTHO05D006720 5.4e-169 598.2 461 65.9
MD15G1202500 Malus domestica HOM05D005294 ORTHO05D006720 7.1e-169 597.8 461 63.3
MSTRG.19532 Avicennia marina HOM05D005294 ORTHO05D006720 1.6e-168 596.7 461 64.4
TWI63G0491 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 2.7e-168 595.9 461 63.3
MD02G1072700 Malus domestica HOM05D005294 ORTHO05D006720 4.6e-168 595.1 461 64.0
Gohir.D06G069100 Gossypium hirsutum HOM05D005294 ORTHO05D006720 6.0e-168 594.7 463 63.9
Gorai.010G080700 Gossypium raimondii HOM05D005294 ORTHO05D006720 6.0e-168 594.7 463 63.9
Eucgr.C03688 Eucalyptus grandis HOM05D005294 ORTHO05D006720 1.7e-167 593.2 463 62.9
LjContig00141g0021499 Lotus japonicus HOM05D005294 ORTHO05D006720 1.7e-167 593.2 461 62.0
Gohir.A06G070500 Gossypium hirsutum HOM05D005294 ORTHO05D006720 2.3e-167 592.8 463 63.7
Thecc.09G094300 Theobroma cacao HOM05D005294 ORTHO05D006720 2.3e-167 592.8 446 65.0
Peaxi162Scf01468g00004 Petunia axillaris HOM05D005294 ORTHO05D006720 3.9e-167 592.0 461 65.9
Duzib168G2227 Durio zibethinus HOM05D005294 ORTHO05D006720 5.1e-167 591.7 445 65.4
Lalb_Chr18g0053011 Lupinus albus HOM05D005294 ORTHO05D006720 1.1e-166 590.5 464 61.4
Prupe.7G214700 Prunus persica HOM05D005294 ORTHO05D006720 6.2e-165 584.7 456 63.8
arahy.Tifrunner.gnm1.ann1.CWN4E9 Arachis hypogaea HOM05D005294 ORTHO05D006720 8.1e-165 584.3 461 61.0
arahy.Tifrunner.gnm1.ann1.T94LMP Arachis hypogaea HOM05D005294 ORTHO05D006720 1.4e-164 583.6 461 61.2
Glyma.14G065800 Glycine max HOM05D005294 ORTHO05D006720 4.0e-164 582.0 461 62.5
Glyma.02G250900 Glycine max HOM05D005294 ORTHO05D006720 1.3e-162 577.0 461 61.6
HanXRQChr12g0355321 Helianthus annuus HOM05D005294 ORTHO05D006720 1.3e-162 577.0 470 61.5
ECA234G1346 Erigeron canadensis HOM05D005294 ORTHO05D006720 2.9e-162 575.9 470 62.3
Lalb_Chr15g0084501 Lupinus albus HOM05D005294 ORTHO05D006720 2.9e-162 575.9 454 61.9
Sopen02g017740 Solanum pennellii HOM05D005294 ORTHO05D006720 2.9e-162 575.9 463 62.6
Solyc02g068580.1 Solanum lycopersicum HOM05D005294 ORTHO05D006720 4.9e-162 575.1 463 62.6
PGR102G3363 Punica granatum HOM05D005294 ORTHO05D006720 1.9e-161 573.2 457 58.6
Cc06_g10960 Coffea canephora HOM05D005294 ORTHO05D006720 4.2e-161 572.0 434 65.2
RcHm_v2.0_Chr2g0092581 Rosa chinensis HOM05D005294 ORTHO05D006720 7.8e-160 567.8 458 61.1
Phvul.008G230500 Phaseolus vulgaris HOM05D005294 ORTHO05D006720 8.7e-159 564.3 462 60.0
Hund05510 Selenicereus undatus HOM05D005294 ORTHO05D006720 5.6e-158 561.6 458 60.3
Aqoxy7G03926 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 3.6e-157 558.9 466 60.3
FvH4_1g06810 Fragaria vesca HOM05D005294 ORTHO05D006720 2.6e-155 552.7 459 60.1
TPR.G25848 Trifolium pratense HOM05D005294 ORTHO05D006720 3.4e-155 552.4 453 59.4
Migut.J00438 Erythranthe guttata HOM05D005294 ORTHO05D006720 4.4e-155 552.0 454 61.2
FAN26G2354 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.7e-154 550.1 459 60.3
Medtr5g080780 Medicago truncatula HOM05D005294 ORTHO05D006720 3.8e-154 548.9 453 59.2
PSO210G3043 Papaver somniferum HOM05D005294 ORTHO05D006720 3.8e-154 548.9 464 60.1
THA.LOC104811733 Tarenaya hassleriana HOM05D005294 ORTHO05D006720 3.8e-154 548.9 460 58.3
FAN23G1873 Fragaria x ananassa HOM05D005294 ORTHO05D006720 4.2e-153 545.4 459 59.7
BcaC01g06444 Brassica carinata HOM05D005294 ORTHO05D006720 5.4e-153 545.0 467 56.5
PSO210G1233 Papaver somniferum HOM05D005294 ORTHO05D006720 1.6e-152 543.5 464 59.7
A03p13220 Brassica napus HOM05D005294 ORTHO05D006720 2.7e-152 542.7 465 57.0
AL8G32570 Arabidopsis lyrata HOM05D005294 ORTHO05D006720 6.0e-152 541.6 456 57.0
ClCG11G001870 Citrullus lanatus HOM05D005294 ORTHO05D006720 7.9e-152 541.2 463 60.3
BraA03t10634Z Brassica rapa HOM05D005294 ORTHO05D006720 3.0e-151 539.3 465 56.6
Carub.0008s1722 Capsella rubella HOM05D005294 ORTHO05D006720 5.1e-151 538.5 463 56.2
CsaV3_2G001600 Cucumis sativus L. HOM05D005294 ORTHO05D006720 6.6e-151 538.1 463 60.3
BolC3t13987H Brassica oleracea HOM05D005294 ORTHO05D006720 8.7e-151 537.7 468 56.8
Thhalv10013465m.g Eutrema salsugineum HOM05D005294 ORTHO05D006720 1.1e-150 537.3 459 56.9
CARHR270490 Cardamine hirsuta HOM05D005294 ORTHO05D006720 2.5e-150 536.2 454 56.6
C03p15490 Brassica napus HOM05D005294 ORTHO05D006720 2.1e-149 533.1 468 56.4
BcaB01g04417 Brassica carinata HOM05D005294 ORTHO05D006720 2.8e-149 532.7 472 56.4
AT5G56740 Arabidopsis thaliana HOM05D005294 ORTHO05D006720 4.8e-149 531.9 456 56.8
BcaB08g36064 Brassica carinata HOM05D005294 ORTHO05D006720 8.1e-149 531.2 458 56.6
BraA10t43499Z Brassica rapa HOM05D005294 ORTHO05D006720 1.1e-148 530.8 454 56.6
Psat2g038680 Pisum sativum HOM05D005294 ORTHO05D006720 2.0e-147 526.6 454 57.0
A10p14080 Brassica napus HOM05D005294 ORTHO05D006720 3.4e-147 525.8 454 56.2
Ah.15g091540 Amaranthus hybridus HOM05D005294 ORTHO05D006720 4.5e-147 525.4 465 57.2
Sp6g18490 Schrenkiella parvula HOM05D005294 ORTHO05D006720 1.3e-146 523.9 469 56.1
VMungo0647G0234 Vigna mungo HOM05D005294 ORTHO05D006720 1.1e-145 520.8 462 58.0
AUR62008827 Chenopodium quinoa HOM05D005294 ORTHO05D006720 4.2e-145 518.8 465 57.4
EL10Ac7g17721 Beta vulgaris HOM05D005294 ORTHO05D006720 1.2e-144 517.3 423 60.5
Sed0020374 Sechium edule HOM05D005294 ORTHO05D006720 1.2e-144 517.3 462 58.4
AUR62025414 Chenopodium quinoa HOM05D005294 ORTHO05D006720 3.5e-144 515.8 465 56.8
SGA_v2.0_scaffold62G21576 Striga asiatica HOM05D005294 ORTHO05D006720 7.9e-144 514.6 497 53.3
FAN19G0312 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.1e-142 510.8 438 58.4
FAN26G0700 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.9e-142 510.0 460 56.7
MBI04_g06995_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 1.3e-135 487.3 456 55.3
unitig_26.g9161 Utricularia gibba HOM05D005294 ORTHO05D006720 1.1e-129 467.6 490 49.6
Aqoxy4G01946 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 4.2e-129 465.7 457 52.3
HPP92_009085 Vanilla planifolia HOM05D005294 ORTHO05D006720 1.2e-128 464.2 459 52.1
Ca_05904_v3 Cicer arietinum L. HOM05D005294 ORTHO05D006720 2.7e-128 463.0 421 54.2
Aa31LG3G12690 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.0e-127 461.1 458 50.7
Os09g0347800 Oryza sativa ssp. japonica HOM05D005294 ORTHO05D006720 7.4e-126 454.9 468 48.3
Haze_25870 Corylus avellana HOM05D005294 ORTHO05D006720 3.7e-125 452.6 422 56.4
BcaC04g20057 Brassica carinata HOM05D005294 ORTHO05D006720 4.5e-123 445.7 449 50.1
Zm00001eb310550 Zea mays HOM05D005294 ORTHO05D006720 5.5e-121 438.7 454 50.4
Nn6g35397 Nelumbo nucifera HOM05D005294 ORTHO05D006720 6.7e-111 405.2 295 64.7
SGA_v2.0_scaffold10G05199 Striga asiatica HOM05D005294 ORTHO05D006720 1.7e-101 374.0 530 42.3
ATR0705G179 Amborella trichopoda HOM05D005294 ORTHO05D006720 8.2e-101 371.7 418 45.0
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 2.2e-93 347.1 369 48.0
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 2.2e-93 347.1 369 48.0
MELO3C004615.2 Cucumis melo HOM05D005294 ORTHO05D006720 1.2e-88 331.3 277 60.3
SEGI_34717 Sequoiadendron giganteum HOM05D005294 ORTHO05D006720 3.4e-86 323.2 490 38.4
CDE09G1011 Ceratophyllum demersum HOM05D005294 ORTHO05D006720 4.4e-86 322.8 445 40.4
SHI02790 Sapria himalayana HOM05D005294 ORTHO05D006720 3.8e-82 309.7 466 39.9
Oeu052126.1 Olea europaea HOM05D005294 ORTHO05D006720 4.9e-77 292.7 329 51.1
Actinidia25279 Actinidia chinensis HOM05D005294 ORTHO05D006720 2.4e-68 263.8 367 45.2
Mapoly0079s0005 Marchantia polymorpha HOM05D005294 ORTHO05D006720 2.1e-64 250.8 510 32.2
Pp3c15_19200 Physcomitrium patens HOM05D005294 ORTHO05D006720 1.5e-62 244.6 499 32.3
MBI14_g43979_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 1.6e-48 198.0 192 54.2
CBR_g45363 Chara braunii HOM05D005294 ORTHO05D006720 8.1e-48 195.7 391 32.7
Zm00001eb171070 Zea mays HOM05D005294 ORTHO05D006720 1.6e-43 181.4 162 54.9
Zm00001eb301910 Zea mays HOM05D005294 ORTHO05D006720 6.0e-43 179.5 162 54.3
RcHm_v2.0_Chr2g0093921 Rosa chinensis HOM05D005294 ORTHO05D006720 1.7e-37 161.4 117 65.8
Aa31LG3G12580 Aethionema arabicum HOM05D005294 ORTHO05D006720 3.9e-34 150.2 124 54.0
Aa31LG3G12620 Aethionema arabicum HOM05D005294 ORTHO05D006720 3.9e-34 150.2 124 54.0
CARHR271620 Cardamine hirsuta HOM05D005294 ORTHO05D006720 8.7e-34 149.1 105 63.8
Aa31sc2040G10 Aethionema arabicum HOM05D005294 ORTHO05D006720 5.6e-33 146.4 121 53.7
Aqoxy4G01950 Aquilegia oxysepala HOM05D002435 ORTHO05D002550 5.6e-33 146.4 217 39.6
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 2.1e-32 144.4 230 37.4
PRCOL_00004982 Prasinoderma coloniale HOM05D005294 ORTHO05D006720 4.8e-32 143.3 423 26.2
RcHm_v2.0_Chr2g0093931 Rosa chinensis HOM05D005294 ORTHO05D006720 2.4e-31 141.0 124 55.6
MCO15G657 Micromonas commoda HOM05D005294 ORTHO05D006720 3.2e-28 130.6 451 23.5
Cre03.g186500 Chlamydomonas reinhardtii HOM05D005294 ORTHO05D006720 6.7e-26 122.9 275 29.8
SMO281G0026 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 9.3e-20 102.4 121 42.1
SGA_v2.0_scaffold194G40752 Striga asiatica HOM05D005294 ORTHO05D006720 6.3e-16 89.7 71 62.0
SMO244G0078 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 1.4e-15 88.6 170 34.1
Zm00001eb382850 Zea mays HOM05D005294 ORTHO05D006720 9.0e-15 85.9 88 50.0
Zm00001eb383990 Zea mays HOM05D005294 ORTHO05D006720 1.5e-14 85.1 88 50.0
Aqoxy4G01951 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 3.2e-12 77.4 69 58.0
Cc06_g10970 Coffea canephora HOM05D005294 ORTHO05D038989 1.8e-10 71.6 40 82.5
GSVIVG01027373001 Vitis vinifera HOM05D005294 ORTHO05D006720 4.3e-09 67.0 39 76.9
GSVIVG01038419001 Vitis vinifera HOM05D005294 ORTHO05D008307 4.3e-09 67.0 38 78.9


User provided reference genes

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