Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004572 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 1.5e-135 486.1 229 100.0
CSS0026032 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 8.4e-115 417.2 222 91.9
Actinidia18787 Actinidia chinensis HOM05D006105 ORTHO05D006345 2.3e-80 302.8 227 70.0
CSS0022090 Camellia sinensis var. sinensis HOM05D006105 ORTHO05D006345 3.1e-77 292.4 230 67.4
Actinidia35226 Actinidia chinensis HOM05D006105 ORTHO05D006345 5.3e-77 291.6 227 67.0
Hma1.2p1_0416F.1_g148610 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 4.0e-64 248.8 228 62.3
Hma1.2p1_0688F.1_g203660 Hydrangea macrophylla HOM05D006105 ORTHO05D006345 6.3e-62 241.5 227 60.8
Rhsim06G0204700 Rhododendron simsii HOM05D006105 ORTHO05D006345 1.1e-61 240.7 230 57.8
Lj8A152T79 Lonicera japonica HOM05D006105 ORTHO05D006345 1.7e-59 233.4 229 57.6
QL08p027367 Quercus lobata HOM05D006105 ORTHO05D006345 1.7e-59 233.4 225 58.7
Rhsim04G0024000 Rhododendron simsii HOM05D006105 ORTHO05D006345 6.5e-59 231.5 231 57.1
Dinv14962 Davidia involucrata HOM05D006105 ORTHO05D006345 5.2e-56 221.9 169 67.5
Prupe.4G171200 Prunus persica HOM05D006105 ORTHO05D006345 7.5e-55 218.0 223 56.1
GSVIVG01014239001 Vitis vinifera HOM05D006105 ORTHO05D006345 1.1e-53 214.2 232 53.9
Actinidia07497 Actinidia chinensis HOM05D006105 ORTHO05D006345 7.0e-53 211.5 228 55.3
Haze_09360 Corylus avellana HOM05D006105 ORTHO05D006345 2.0e-52 209.9 229 56.8
FAN21G1974 Fragaria x ananassa HOM05D006105 ORTHO05D006345 2.9e-51 206.1 228 50.9
Cc05_g11450 Coffea canephora HOM05D006105 ORTHO05D006345 8.6e-51 204.5 228 50.0
FAN16G1829 Fragaria x ananassa HOM05D006105 ORTHO05D006345 2.5e-50 203.0 220 50.0
MD03G1238800 Malus domestica HOM05D006105 ORTHO05D006345 2.5e-50 203.0 226 51.3
FAN11G0448 Fragaria x ananassa HOM05D006105 ORTHO05D006345 1.0e-48 197.6 217 49.8
FAN25G1303 Fragaria x ananassa HOM05D006105 ORTHO05D006345 2.3e-48 196.4 230 48.3
FvH4_3g18750 Fragaria vesca HOM05D006105 ORTHO05D006345 5.2e-48 195.3 220 49.1
Ciclev10010617m.g Citrus clementina HOM05D006105 ORTHO05D006345 6.8e-48 194.9 224 51.8
RcHm_v2.0_Chr5g0031561 Rosa chinensis HOM05D006105 ORTHO05D006345 1.2e-47 194.1 229 49.3
Cfa019604 Carpinus fangiana HOM05D006105 ORTHO05D006345 1.5e-47 193.7 232 54.7
Sopen12g005900 Solanum pennellii HOM05D006105 ORTHO05D006345 2.8e-46 189.5 226 50.4
Thecc.07G103600 Theobroma cacao HOM05D006105 ORTHO05D006345 2.4e-45 186.4 230 53.5
Nitab4.5_0005445g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 9.2e-45 184.5 226 49.1
Gohir.A08G021700 Gossypium hirsutum HOM05D006105 ORTHO05D006345 2.0e-44 183.3 229 51.1
COL.COLO4_17616 Corchorus olitorius HOM05D006105 ORTHO05D006345 2.3e-43 179.9 231 53.7
ECA234G3938 Erigeron canadensis HOM05D006105 ORTHO05D006345 3.9e-43 179.1 230 50.4
Manes.03G103501 Manihot esculenta HOM05D006105 ORTHO05D006345 6.6e-43 178.3 228 50.0
TWI38G0440 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 6.6e-43 178.3 227 49.8
HanXRQChr10g0304731 Helianthus annuus HOM05D006105 ORTHO05D006345 1.9e-42 176.8 230 49.6
PGSC0003DMG400015376 Solanum tuberosum HOM05D006105 ORTHO05D006345 1.9e-42 176.8 253 44.3
Gorai.004G029900 Gossypium raimondii HOM05D006105 ORTHO05D006345 5.6e-42 175.3 229 50.7
Gohir.D08G032500 Gossypium hirsutum HOM05D006105 ORTHO05D006345 6.1e-41 171.8 229 49.8
TAR629G1657 Trochodendron aralioides HOM05D006105 ORTHO05D006345 3.1e-40 169.5 237 46.8
Oeu061338.1 Olea europaea HOM05D006105 ORTHO05D006345 8.9e-40 167.9 222 47.7
PSO541G5705 Papaver somniferum HOM05D006105 ORTHO05D006345 8.9e-40 167.9 241 47.3
DCAR_019586 Daucus carota HOM05D006105 ORTHO05D006345 2.6e-39 166.4 225 46.2
Nitab4.5_0003202g0040 Nicotiana tabacum HOM05D006105 ORTHO05D006345 5.8e-39 165.2 216 46.3
Nitab4.5_0000246g0110 Nicotiana tabacum HOM05D006105 ORTHO05D006345 7.5e-39 164.9 228 46.5
Cpa.g.sc131.73 Carica papaya HOM05D006105 ORTHO05D006345 1.3e-38 164.1 220 49.1
Duzib213G0100 Durio zibethinus HOM05D006105 ORTHO05D006345 1.3e-38 164.1 229 50.7
PSO675G6909 Papaver somniferum HOM05D006105 ORTHO05D006345 2.2e-38 163.3 237 47.3
HanXRQChr12g0372831 Helianthus annuus HOM05D006105 ORTHO05D006345 8.3e-38 161.4 227 47.6
TAR629G0423 Trochodendron aralioides HOM05D000109 ORTHO05D000965 1.4e-37 160.6 211 46.9
Duzib268G0903 Durio zibethinus HOM05D006105 ORTHO05D006345 5.4e-37 158.7 228 50.9
MSTRG.14216 Avicennia marina HOM05D006105 ORTHO05D006345 7.0e-37 158.3 225 45.3
MD11G1258600 Malus domestica HOM05D006105 ORTHO05D006345 4.6e-36 155.6 229 43.7
Dinv18338 Davidia involucrata HOM05D006105 ORTHO05D006345 5.6e-34 148.7 96 77.1
Gorai.002G064700 Gossypium raimondii HOM05D006105 ORTHO05D006345 3.6e-33 146.0 229 46.3
Lsat_1_v5_gn_5_129201 Lactuca sativa HOM05D006105 ORTHO05D006345 8.0e-33 144.8 197 45.7
Nn1g09023 Nelumbo nucifera HOM05D006105 ORTHO05D006345 1.1e-32 144.4 229 43.7
Oeu005394.1 Olea europaea HOM05D006105 ORTHO05D006345 1.1e-32 144.4 213 45.5
Solyc07g062685.2 Solanum lycopersicum HOM05D006105 ORTHO05D006345 1.1e-32 144.4 222 43.2
Oeu059277.1 Olea europaea HOM05D006105 ORTHO05D006345 1.5e-31 140.6 225 44.0
CiPaw.12G115300 Carya illinoinensis HOM05D006105 ORTHO05D006345 2.0e-31 140.2 226 43.8
DCAR_021012 Daucus carota HOM05D006105 ORTHO05D006345 1.3e-30 137.5 222 42.8
Peaxi162Scf00069g01930 Petunia axillaris HOM05D006105 ORTHO05D006345 1.3e-30 137.5 251 39.8
Peaxi162Scf00000g02515 Petunia axillaris HOM05D006105 ORTHO05D006345 2.2e-30 136.7 197 45.2
Sopen07g030920 Solanum pennellii HOM05D006105 ORTHO05D006345 2.2e-30 136.7 222 42.8
PGSC0003DMG400021273 Solanum tuberosum HOM05D006105 ORTHO05D006345 2.2e-30 136.7 226 41.6
Gohir.D01G045100 Gossypium hirsutum HOM05D006105 ORTHO05D006345 2.9e-30 136.3 223 45.3
Potri.001G375600 Populus trichocarpa HOM05D006105 ORTHO05D006345 8.3e-30 134.8 212 43.4
AUR62019562 Chenopodium quinoa HOM05D006105 ORTHO05D006345 1.1e-29 134.4 237 45.1
DCAR_013141 Daucus carota HOM05D006105 ORTHO05D006345 2.4e-29 133.3 224 40.6
Nitab4.5_0003077g0030 Nicotiana tabacum HOM05D006105 ORTHO05D006345 4.1e-29 132.5 184 44.0
PGSC0003DMG400012397 Solanum tuberosum HOM05D006105 ORTHO05D006345 1.2e-28 131.0 219 41.1
Atru.chr2.2260 Acer truncatum HOM05D006105 ORTHO05D006345 7.8e-28 128.3 190 46.8
CiPaw.11G164300 Carya illinoinensis HOM05D006105 ORTHO05D006345 1.0e-27 127.9 230 43.5
ClCG07G009910 Citrullus lanatus HOM05D006105 ORTHO05D006345 1.3e-27 127.5 227 41.9
MSTRG.14950 Avicennia marina HOM05D006105 ORTHO05D006345 3.0e-27 126.3 226 41.2
DCAR_024487 Daucus carota HOM05D006105 ORTHO05D006345 3.0e-27 126.3 224 38.8
Sc03g0010360 Simmondsia chinensis HOM05D006105 ORTHO05D006345 4.3e-26 122.5 177 44.6
Sopen10g003350 Solanum pennellii HOM05D016660 ORTHO05D006345 1.6e-25 120.6 208 40.4
MELO3C016090.2 Cucumis melo HOM05D006105 ORTHO05D006345 1.1e-24 117.9 223 41.3
TWI39G0145 Tripterygium wilfordii HOM05D006105 ORTHO05D006345 1.4e-24 117.5 234 41.5
Solyc12g014120.3 Solanum lycopersicum HOM05D006105 ORTHO05D006345 1.8e-24 117.1 101 58.4
VMungo1080G1877 Vigna mungo HOM05D006105 ORTHO05D006345 2.3e-24 116.7 229 40.6
ClCG11G017660 Citrullus lanatus HOM05D006105 ORTHO05D006345 3.1e-24 116.3 229 40.6
CsaV3_4G008420 Cucumis sativus L. HOM05D006105 ORTHO05D006345 4.0e-24 115.9 222 41.0
ECA236G3415 Erigeron canadensis HOM05D006105 ORTHO05D006345 3.4e-23 112.8 208 40.9
AUR62037870 Chenopodium quinoa HOM05D006105 ORTHO05D006345 5.8e-23 112.1 227 41.9
Lalb_Chr25g0286021 Lupinus albus HOM05D006105 ORTHO05D006345 5.8e-23 112.1 234 39.3
Lj3g0024128 Lotus japonicus HOM05D006105 ORTHO05D006345 2.2e-22 110.2 233 40.8
Phvul.005G068000 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 2.9e-22 109.8 230 40.9
Sed0015488 Sechium edule HOM05D006105 ORTHO05D006345 1.4e-21 107.5 228 39.5
Sed0005720 Sechium edule HOM05D006105 ORTHO05D006345 4.1e-21 105.9 229 37.6
arahy.Tifrunner.gnm1.ann1.KE6FEG Arachis hypogaea HOM05D006105 ORTHO05D006345 5.4e-21 105.5 229 37.6
Glyma.12G228100 Glycine max HOM05D006105 ORTHO05D006345 1.2e-20 104.4 234 39.7
MBI07_g17039_MAGBIO Magnolia biondii HOM05D006105 ORTHO05D006345 2.1e-20 103.6 228 41.2
CsaV3_4G033280 Cucumis sativus L. HOM05D006105 ORTHO05D006345 3.5e-20 102.8 229 40.2
MELO3C025628.2 Cucumis melo HOM05D006105 ORTHO05D006345 1.0e-19 101.3 230 38.3
Aqoxy1G02199 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 8.6e-19 98.2 235 36.2
Dinv17387 Davidia involucrata HOM05D006105 ORTHO05D006345 1.9e-18 97.1 232 36.6
Sed0026435 Sechium edule HOM05D006105 ORTHO05D006345 2.5e-18 96.7 226 40.3
Solyc10g007156.2 Solanum lycopersicum HOM05D016660 ORTHO05D006345 4.3e-18 95.9 185 37.8
SGA_v2.0_scaffold34G13768 Striga asiatica HOM05D006105 ORTHO05D006345 7.3e-18 95.1 228 36.0
Migut.M00751 Erythranthe guttata HOM05D006105 ORTHO05D006345 2.1e-17 93.6 223 35.4
SGA_v2.0_scaffold73G24208 Striga asiatica HOM05D006105 ORTHO05D006345 4.7e-17 92.4 239 38.5
Glyma.13G271900 Glycine max HOM05D006105 ORTHO05D006345 8.1e-17 91.7 235 38.3
Oeu051102.1 Olea europaea HOM05D006105 ORTHO05D006345 2.0e-15 87.0 108 47.2
arahy.Tifrunner.gnm1.ann1.LEI4AX Arachis hypogaea HOM05D006105 ORTHO05D006345 5.8e-15 85.5 234 32.5
Manes.16G035200 Manihot esculenta HOM05D013066 ORTHO05D006345 9.9e-15 84.7 227 35.2
SalBow8G2605 Salvia bowleyana HOM05D006105 ORTHO05D006345 9.9e-15 84.7 231 33.8
arahy.Tifrunner.gnm1.ann1.TTJ9YL Arachis hypogaea HOM05D006105 ORTHO05D006345 1.3e-14 84.3 221 33.0
Glyma.06G232600 Glycine max HOM05D006105 ORTHO05D006345 2.2e-14 83.6 223 34.1
TPR.G9213 Trifolium pratense HOM05D006105 ORTHO05D006345 4.9e-14 82.4 225 34.7
Ca_04016_v3 Cicer arietinum L. HOM05D006105 ORTHO05D006345 1.4e-13 80.9 233 34.8
Manes.17G052800 Manihot esculenta HOM05D013066 ORTHO05D010890 1.9e-13 80.5 227 35.2
VMungo1127G1756 Vigna mungo HOM05D006105 ORTHO05D006345 2.4e-13 80.1 225 33.8
Aqoxy4G00493 Aquilegia oxysepala HOM05D006105 ORTHO05D006345 3.2e-13 79.7 228 32.9
Sabra16G0247400 Salix brachista HOM05D006105 ORTHO05D006345 9.3e-13 78.2 226 34.1
Medtr2g078220 Medicago truncatula HOM05D006105 ORTHO05D006345 1.3e-11 74.3 230 31.3
GSVIVG01021165001 Vitis vinifera HOM05D006105 ORTHO05D006345 3.0e-11 73.2 229 31.0
HanXRQChr17g0545011 Helianthus annuus HOM05D006105 ORTHO05D006345 8.7e-11 71.6 182 33.5
Migut.H01972 Erythranthe guttata HOM05D006105 ORTHO05D006345 1.5e-10 70.9 185 30.8
Gohir.A01G059000 Gossypium hirsutum HOM05D006105 ORTHO05D006345 1.5e-10 70.9 74 51.4
Phvul.011G157100 Phaseolus vulgaris HOM05D006105 ORTHO05D006345 5.6e-10 68.9 224 33.9
Thecc.06G176400 Theobroma cacao HOM05D013066 ORTHO05D010890 9.6e-10 68.2 231 33.8
Eucgr.F01202 Eucalyptus grandis HOM05D006105 ORTHO05D006345 8.1e-09 65.1 77 50.6
SalBow7G3373 Salvia bowleyana HOM05D006105 ORTHO05D006345 1.1e-08 64.7 149 35.6
Gohir.A13G148200 Gossypium hirsutum HOM05D006105 ORTHO05D006345 2.4e-08 63.5 107 43.0
SalBow7G2198 Salvia bowleyana HOM05D006105 ORTHO05D006345 3.1e-08 63.2 149 34.9
Cfa000566 Carpinus fangiana HOM05D038757 ORTHO05D010890 4.4e-07 59.3 141 35.5
Sopen10g003360 Solanum pennellii HOM05D016660 ORTHO05D006345 4.4e-07 59.3 121 34.7
Lsat_1_v5_gn_7_103061 Lactuca sativa HOM05D006105 ORTHO05D006345 4.9e-06 55.8 49 63.3


User provided reference genes

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