Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004560 Camellia sinensis var. sinensis HOM05D001549 ORTHO05D109985 6.2e-76 287.3 142 100.0
CSS0029480 Camellia sinensis var. sinensis HOM05D001549 ORTHO05D110723 5.5e-24 114.8 72 90.3
CSS0013923 Camellia sinensis var. sinensis HOM05D001549 ORTHO05D109872 7.2e-24 114.4 140 54.3
CSS0040402 Camellia sinensis var. sinensis HOM05D001549 ORTHO05D112689 4.7e-23 111.7 91 72.5
Rhsim10G0125500 Rhododendron simsii HOM05D001549 ORTHO05D003098 3.8e-09 65.5 49 65.3
FAN28G2359 Fragaria x ananassa HOM05D001549 ORTHO05D003098 5.0e-09 65.1 53 64.2
Sed0004252 Sechium edule HOM05D001549 ORTHO05D003098 6.6e-09 64.7 42 73.8
TAR628G1517 Trochodendron aralioides HOM05D001549 ORTHO05D003098 8.6e-09 64.3 37 78.4
FAN19G2984 Fragaria x ananassa HOM05D001549 ORTHO05D003098 1.1e-08 63.9 53 64.2
CSS0023079 Camellia sinensis var. sinensis HOM05D001549 ORTHO05D003098 1.9e-08 63.2 35 82.9
CANSAT01G2865 Cannabis sativa HOM05D001549 ORTHO05D003098 1.9e-08 63.2 35 82.9
FAN23G0473 Fragaria x ananassa HOM05D001549 ORTHO05D003098 1.9e-08 63.2 49 67.3
Nn5g29397 Nelumbo nucifera HOM05D001549 ORTHO05D003098 2.5e-08 62.8 49 65.3
Ciclev10024926m.g Citrus clementina HOM05D001549 ORTHO05D003098 4.3e-08 62.0 35 80.0
FvH4_1g14740 Fragaria vesca HOM05D001549 ORTHO05D003098 4.3e-08 62.0 54 61.1
FAN26G1027 Fragaria x ananassa HOM05D001549 ORTHO05D003098 5.6e-08 61.6 37 75.7
MD15G1274800 Malus domestica HOM05D001549 ORTHO05D003098 5.6e-08 61.6 49 65.3
Prupe.7G143000 Prunus persica HOM05D001549 ORTHO05D003098 5.6e-08 61.6 54 61.1
RcHm_v2.0_Chr1g0319111 Rosa chinensis HOM05D001549 ORTHO05D003098 5.6e-08 61.6 54 61.1
RcHm_v2.0_Chr2g0103681 Rosa chinensis HOM05D001549 ORTHO05D003098 5.6e-08 61.6 54 61.1
Dinv39910 Davidia involucrata HOM05D001549 ORTHO05D003098 7.3e-08 61.2 35 80.0
vmacro08940 Vaccinium macrocarpon HOM05D001549 ORTHO05D003098 7.3e-08 61.2 35 77.1
CiPaw.01G027000 Carya illinoinensis HOM05D001549 ORTHO05D003098 9.5e-08 60.8 51 62.7
QL06p043875 Quercus lobata HOM05D001549 ORTHO05D003098 9.5e-08 60.8 49 63.3
Atru.chr3.453 Acer truncatum HOM05D001549 ORTHO05D003098 1.2e-07 60.5 35 77.1
ClCG02G017060 Citrullus lanatus HOM05D001549 ORTHO05D003098 1.6e-07 60.1 42 69.0
MELO3C004423.2 Cucumis melo HOM05D001549 ORTHO05D003098 1.6e-07 60.1 42 69.0
CsaV3_2G003710 Cucumis sativus L. HOM05D001549 ORTHO05D003098 1.6e-07 60.1 42 69.0
MD02G1160500 Malus domestica HOM05D001549 ORTHO05D003098 2.1e-07 59.7 56 55.4
Nitab4.5_0000108g0230 Nicotiana tabacum HOM05D001549 ORTHO05D003098 2.8e-07 59.3 42 69.0
Nitab4.5_0001014g0130 Nicotiana tabacum HOM05D001549 ORTHO05D003098 2.8e-07 59.3 42 69.0
PSO675G5453 Papaver somniferum HOM05D001549 ORTHO05D003098 2.8e-07 59.3 35 74.3
Sc16g0001540 Simmondsia chinensis HOM05D001549 ORTHO05D003098 2.8e-07 59.3 37 73.0
MBI16_g19886_MAGBIO Magnolia biondii HOM05D001549 ORTHO05D003098 3.6e-07 58.9 37 70.3
GSVIVG01005084001 Vitis vinifera HOM05D001549 ORTHO05D003098 3.6e-07 58.9 35 74.3
Actinidia12081 Actinidia chinensis HOM05D001549 ORTHO05D003098 4.7e-07 58.5 35 77.1
Haze_15180 Corylus avellana HOM05D001549 ORTHO05D003098 4.7e-07 58.5 35 77.1
Eucgr.I01019 Eucalyptus grandis HOM05D001549 ORTHO05D003098 4.7e-07 58.5 35 74.3
Cfa004221 Carpinus fangiana HOM05D001549 ORTHO05D003098 6.1e-07 58.2 35 77.1
Gohir.A11G045300 Gossypium hirsutum HOM05D001549 ORTHO05D003098 6.1e-07 58.2 56 51.8
Gohir.D11G048800 Gossypium hirsutum HOM05D001549 ORTHO05D003098 6.1e-07 58.2 56 51.8
Peaxi162Scf00535g00733 Petunia axillaris HOM05D001549 ORTHO05D003098 6.1e-07 58.2 42 69.0
TWI73G0625 Tripterygium wilfordii HOM05D001549 ORTHO05D003098 6.1e-07 58.2 35 74.3
Aqoxy6G00926 Aquilegia oxysepala HOM05D001549 ORTHO05D003098 8.0e-07 57.8 44 63.6
DCAR_025681 Daucus carota HOM05D001549 ORTHO05D003098 8.0e-07 57.8 57 50.9
Cpa.g.sc15.91 Carica papaya HOM05D001549 ORTHO05D003098 1.4e-06 57.0 30 80.0
Gorai.007G052400 Gossypium raimondii HOM05D001549 ORTHO05D003098 1.4e-06 57.0 56 50.0
Lj4C136G10 Lonicera japonica HOM05D001549 ORTHO05D003098 1.4e-06 57.0 29 82.8
Lalb_Chr16g0388481 Lupinus albus HOM05D001549 ORTHO05D003098 1.8e-06 56.6 42 61.9
Potri.007G035900 Populus trichocarpa HOM05D001549 ORTHO05D003098 1.8e-06 56.6 35 74.3
CAN.G836.28 Capsicum annuum HOM05D001549 ORTHO05D003098 2.3e-06 56.2 42 66.7
Manes.13G130700 Manihot esculenta HOM05D001549 ORTHO05D003098 2.3e-06 56.2 35 74.3
Sabra07G0031400 Salix brachista HOM05D001549 ORTHO05D003098 3.0e-06 55.8 35 68.6
Psat4g089680 Pisum sativum HOM05D001549 ORTHO05D003098 4.0e-06 55.5 42 59.5
PGSC0003DMG400010077 Solanum tuberosum HOM05D001549 ORTHO05D003098 4.0e-06 55.5 39 66.7
Thecc.01G047400 Theobroma cacao HOM05D001549 ORTHO05D003098 4.0e-06 55.5 31 77.4
arahy.Tifrunner.gnm1.ann1.NDG4UC Arachis hypogaea HOM05D001549 ORTHO05D003098 5.2e-06 55.1 42 59.5
arahy.Tifrunner.gnm1.ann1.WXMK30 Arachis hypogaea HOM05D001549 ORTHO05D003098 5.2e-06 55.1 42 59.5
Medtr8g079030 Medicago truncatula HOM05D001549 ORTHO05D003098 5.2e-06 55.1 42 59.5
Cc07_g05500 Coffea canephora HOM05D001549 ORTHO05D003098 6.8e-06 54.7 39 66.7
THA.LOC104827094 Tarenaya hassleriana HOM05D001549 ORTHO05D003098 6.8e-06 54.7 42 61.9
COL.COLO4_11319 Corchorus olitorius HOM05D001549 ORTHO05D003098 8.9e-06 54.3 35 68.6


User provided reference genes

Program Settings