Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004554 Camellia sinensis var. sinensis HOM05D003356 ORTHO05D043358 1.1e-33 146.0 70 100.0
CSS0014763 Camellia sinensis var. sinensis HOM05D003356 ORTHO05D004362 3.1e-28 127.9 62 98.4
ClCG11G018140 Citrullus lanatus HOM05D003356 ORTHO05D004362 5.5e-25 117.1 64 84.4
MELO3C016707.2 Cucumis melo HOM05D003356 ORTHO05D004362 5.5e-25 117.1 64 84.4
CsaV3_4G033780 Cucumis sativus L. HOM05D003356 ORTHO05D004362 5.5e-25 117.1 64 84.4
Sed0005873 Sechium edule HOM05D003356 ORTHO05D004362 2.1e-24 115.2 64 84.4
FvH4_3g20420 Fragaria vesca HOM05D003356 ORTHO05D004362 6.1e-24 113.6 64 82.8
FAN16G2459 Fragaria x ananassa HOM05D003356 ORTHO05D004362 6.1e-24 113.6 64 82.8
FAN21G0641 Fragaria x ananassa HOM05D003356 ORTHO05D004362 6.1e-24 113.6 64 82.8
Prupe.4G183900 Prunus persica HOM05D003356 ORTHO05D004362 6.1e-24 113.6 64 84.4
CiPaw.11G172300 Carya illinoinensis HOM05D003356 ORTHO05D004362 1.4e-23 112.5 64 81.2
QL08p020494 Quercus lobata HOM05D003356 ORTHO05D004362 1.4e-23 112.5 64 81.2
MD03G1225500 Malus domestica HOM05D003356 ORTHO05D004362 2.3e-23 111.7 64 81.2
vmacro09540 Vaccinium macrocarpon HOM05D003356 ORTHO05D004362 2.3e-23 111.7 69 73.9
Dinv04314 Davidia involucrata HOM05D003356 ORTHO05D004362 3.0e-23 111.3 62 82.3
Gohir.A11G283100 Gossypium hirsutum HOM05D003356 ORTHO05D004362 3.0e-23 111.3 64 79.7
Gohir.D11G296752 Gossypium hirsutum HOM05D003356 ORTHO05D004362 3.0e-23 111.3 64 79.7
Gorai.007G321200 Gossypium raimondii HOM05D003356 ORTHO05D004362 3.0e-23 111.3 64 79.7
Manes.15G086100 Manihot esculenta HOM05D003356 ORTHO05D004362 3.0e-23 111.3 64 79.7
Rhsim04G0020100 Rhododendron simsii HOM05D003356 ORTHO05D004362 3.0e-23 111.3 64 79.7
GSVIVG01014366001 Vitis vinifera HOM05D003356 ORTHO05D004362 3.0e-23 111.3 64 81.2
PGR083G2041 Punica granatum HOM05D003356 ORTHO05D004362 3.9e-23 110.9 64 79.7
QL08p020501 Quercus lobata HOM05D003356 ORTHO05D043358 3.9e-23 110.9 62 82.3
FAN11G2849 Fragaria x ananassa HOM05D003356 ORTHO05D004362 5.1e-23 110.5 64 81.2
RcHm_v2.0_Chr5g0034311 Rosa chinensis HOM05D003356 ORTHO05D004362 5.1e-23 110.5 64 81.2
Lalb_Chr01g0006491 Lupinus albus HOM05D003356 ORTHO05D004362 6.7e-23 110.2 65 78.5
Potri.011G121100 Populus trichocarpa HOM05D003356 ORTHO05D004362 8.8e-23 109.8 64 78.1
Haze_09456 Corylus avellana HOM05D003356 ORTHO05D004362 1.1e-22 109.4 64 78.1
Glyma.06G246600 Glycine max HOM05D003356 ORTHO05D004362 1.1e-22 109.4 64 78.1
Thecc.07G080500 Theobroma cacao HOM05D003356 ORTHO05D004362 1.5e-22 109.0 64 76.6
Dinv08305 Davidia involucrata HOM05D003356 ORTHO05D004362 2.0e-22 108.6 62 80.6
Cfa020557 Carpinus fangiana HOM05D003356 ORTHO05D004362 2.6e-22 108.2 64 78.1
Duzib213G0462 Durio zibethinus HOM05D003356 ORTHO05D004362 2.6e-22 108.2 64 78.1
Eucgr.F01103 Eucalyptus grandis HOM05D003356 ORTHO05D004362 3.3e-22 107.8 64 79.7
Manes.03G112000 Manihot esculenta HOM05D003356 ORTHO05D004362 3.3e-22 107.8 64 78.1
Sabra11G0105100 Salix brachista HOM05D003356 ORTHO05D004362 3.3e-22 107.8 62 80.6
TAR626G0399 Trochodendron aralioides HOM05D003356 ORTHO05D004362 3.3e-22 107.8 64 78.1
FAN25G0303 Fragaria x ananassa HOM05D003356 ORTHO05D004362 4.4e-22 107.5 61 82.0
Actinidia35254 Actinidia chinensis HOM05D003356 ORTHO05D004362 5.7e-22 107.1 62 80.6
MD11G1246200 Malus domestica HOM05D003356 ORTHO05D004362 5.7e-22 107.1 64 78.1
Cpa.g.sc80.47 Carica papaya HOM05D003356 ORTHO05D004362 7.4e-22 106.7 62 79.0
Hma1.2p1_0148F.1_g066130 Hydrangea macrophylla HOM05D003356 ORTHO05D004362 7.4e-22 106.7 62 80.6
CSS0023849 Camellia sinensis var. sinensis HOM05D003356 ORTHO05D004362 1.3e-21 105.9 63 79.4
CANSAT56G0567 Cannabis sativa HOM05D003356 ORTHO05D004362 1.3e-21 105.9 64 79.7
COL.COLO4_09421 Corchorus olitorius HOM05D003356 ORTHO05D004362 1.3e-21 105.9 64 76.6
Glyma.12G150800 Glycine max HOM05D003356 ORTHO05D004362 1.3e-21 105.9 64 76.6
Lj3g0021569 Lotus japonicus HOM05D003356 ORTHO05D004362 1.3e-21 105.9 65 78.5
Peaxi162Scf00069g01337 Petunia axillaris HOM05D003356 ORTHO05D004362 1.3e-21 105.9 66 77.3
vmacro11852 Vaccinium macrocarpon HOM05D003356 ORTHO05D004362 1.3e-21 105.9 64 79.7
Nitab4.5_0001551g0030 Nicotiana tabacum HOM05D003356 ORTHO05D004362 1.7e-21 105.5 65 78.5
Glyma.13G278300 Glycine max HOM05D003356 ORTHO05D004362 2.8e-21 104.8 64 71.9
THA.LOC104810480 Tarenaya hassleriana HOM05D003356 ORTHO05D004362 3.7e-21 104.4 64 75.0
Nitab4.5_0003688g0040 Nicotiana tabacum HOM05D003356 ORTHO05D004362 6.3e-21 103.6 65 76.9
Hund22933 Selenicereus undatus HOM05D003356 ORTHO05D004362 6.3e-21 103.6 64 76.6
TWI39G1274 Tripterygium wilfordii HOM05D003356 ORTHO05D004362 6.3e-21 103.6 64 75.0
Ciclev10007637m.g Citrus clementina HOM05D003356 ORTHO05D004362 8.2e-21 103.2 65 76.9
Atru.chr2.2711 Acer truncatum HOM05D003356 ORTHO05D004362 1.4e-20 102.4 65 75.4
AL3G27880 Arabidopsis lyrata HOM05D003356 ORTHO05D004362 1.4e-20 102.4 64 75.0
Sp3g13630 Schrenkiella parvula HOM05D003356 ORTHO05D004362 1.4e-20 102.4 64 75.0
THA.LOC104818067 Tarenaya hassleriana HOM05D003356 ORTHO05D004362 1.4e-20 102.4 64 73.4
AT3G15380 Arabidopsis thaliana HOM05D003356 ORTHO05D004362 1.8e-20 102.1 64 73.4
CARHR090420 Cardamine hirsuta HOM05D003356 ORTHO05D004362 1.8e-20 102.1 64 73.4
Thhalv10020171m.g Eutrema salsugineum HOM05D003356 ORTHO05D004362 1.8e-20 102.1 64 73.4
arahy.Tifrunner.gnm1.ann1.1CAS5W Arachis hypogaea HOM05D003356 ORTHO05D004362 2.4e-20 101.7 64 73.4
Gohir.D01G052400 Gossypium hirsutum HOM05D003356 ORTHO05D004362 2.4e-20 101.7 64 73.4
Gorai.002G072200 Gossypium raimondii HOM05D003356 ORTHO05D004362 2.4e-20 101.7 64 73.4
Lj1A846T66 Lonicera japonica HOM05D003356 ORTHO05D004362 2.4e-20 101.7 69 71.0
Carub.0003s1510 Capsella rubella HOM05D003356 ORTHO05D004362 3.1e-20 101.3 64 75.0
ATR0680G284 Amborella trichopoda HOM05D003356 ORTHO05D004362 4.1e-20 100.9 68 70.6
Lj8C157T5 Lonicera japonica HOM05D003356 ORTHO05D004362 4.1e-20 100.9 65 72.3
Ah.04g165130 Amaranthus hybridus HOM05D003356 ORTHO05D004362 5.3e-20 100.5 58 77.6
EL10Ac4g08143 Beta vulgaris HOM05D003356 ORTHO05D004362 5.3e-20 100.5 60 76.7
Psat4g135280 Pisum sativum HOM05D003356 ORTHO05D004362 5.3e-20 100.5 64 71.9
Solyc07g063230.3 Solanum lycopersicum HOM05D003356 ORTHO05D004362 5.3e-20 100.5 67 73.1
VMungo1080G1275 Vigna mungo HOM05D003356 ORTHO05D004362 5.3e-20 100.5 64 70.3
arahy.Tifrunner.gnm1.ann1.YHI9TY Arachis hypogaea HOM05D003356 ORTHO05D004362 6.9e-20 100.1 64 71.9
Cc05_g12200 Coffea canephora HOM05D003356 ORTHO05D004362 6.9e-20 100.1 59 81.4
Glyma.12G223200 Glycine max HOM05D003356 ORTHO05D004362 9.1e-20 99.8 64 67.2
BcaB06g29569 Brassica carinata HOM05D003356 ORTHO05D004362 1.2e-19 99.4 64 73.4
BcaC05g28976 Brassica carinata HOM05D003356 ORTHO05D004362 1.2e-19 99.4 64 73.4
A05p34020 Brassica napus HOM05D003356 ORTHO05D004362 1.2e-19 99.4 64 73.4
C05p51790 Brassica napus HOM05D003356 ORTHO05D004362 1.2e-19 99.4 64 73.4
BolC5t33865H Brassica oleracea HOM05D003356 ORTHO05D004362 1.2e-19 99.4 64 73.4
BraA05t22224Z Brassica rapa HOM05D003356 ORTHO05D004362 1.2e-19 99.4 64 73.4
Lj3g0006216 Lotus japonicus HOM05D003356 ORTHO05D004362 1.2e-19 99.4 64 68.8
Phvul.011G150000 Phaseolus vulgaris HOM05D003356 ORTHO05D004362 1.2e-19 99.4 64 73.4
Aa31LG8G2610 Aethionema arabicum HOM05D003356 ORTHO05D004362 1.5e-19 99.0 64 70.3
A03p39290 Brassica napus HOM05D003356 ORTHO05D004362 1.5e-19 99.0 64 75.0
C03p47660 Brassica napus HOM05D003356 ORTHO05D004362 1.5e-19 99.0 64 75.0
BolC3t17043H Brassica oleracea HOM05D003356 ORTHO05D004362 1.5e-19 99.0 64 75.0
BraA03t13080Z Brassica rapa HOM05D003356 ORTHO05D004362 1.5e-19 99.0 64 75.0
Lalb_Chr25g0286471 Lupinus albus HOM05D003356 ORTHO05D004362 1.5e-19 99.0 64 75.0
Nn1g06580 Nelumbo nucifera HOM05D003356 ORTHO05D004362 1.5e-19 99.0 64 68.8
Sopen07g031420 Solanum pennellii HOM05D003356 ORTHO05D004362 1.5e-19 99.0 66 72.7
PGSC0003DMG400012423 Solanum tuberosum HOM05D003356 ORTHO05D004362 1.5e-19 99.0 66 72.7
TAR624G0482 Trochodendron aralioides HOM05D003356 ORTHO05D004362 1.5e-19 99.0 64 73.4
VMungo1127G2063 Vigna mungo HOM05D003356 ORTHO05D004362 1.5e-19 99.0 64 73.4
arahy.Tifrunner.gnm1.ann1.4T1P38 Arachis hypogaea HOM05D003356 ORTHO05D004362 2.0e-19 98.6 63 71.4
Ca_20647_v3 Cicer arietinum L. HOM05D003356 ORTHO05D004362 2.0e-19 98.6 62 72.6
Sc03g0009930 Simmondsia chinensis HOM05D003356 ORTHO05D004362 2.0e-19 98.6 62 79.0
Actinidia01887 Actinidia chinensis HOM05D003356 ORTHO05D004362 2.6e-19 98.2 64 73.4
arahy.Tifrunner.gnm1.ann1.YA7R1N Arachis hypogaea HOM05D003356 ORTHO05D004362 3.4e-19 97.8 64 70.3
Rhsim06G0197100 Rhododendron simsii HOM05D003356 ORTHO05D004362 3.4e-19 97.8 66 74.2
CAN.G162.68 Capsicum annuum HOM05D003356 ORTHO05D004362 4.5e-19 97.4 66 75.8
Ah.06g183980 Amaranthus hybridus HOM05D003356 ORTHO05D004362 5.9e-19 97.1 54 81.5
Psat5g244680 Pisum sativum HOM05D003356 ORTHO05D004362 7.7e-19 96.7 66 71.2
TPR.G31511 Trifolium pratense HOM05D003356 ORTHO05D004362 7.7e-19 96.7 65 72.3
Ca_01833_v3 Cicer arietinum L. HOM05D003356 ORTHO05D004362 1.3e-18 95.9 68 67.6
PSO541G1226 Papaver somniferum HOM05D003356 ORTHO05D004362 1.3e-18 95.9 67 68.7
ECA236G2009 Erigeron canadensis HOM05D003356 ORTHO05D004362 1.7e-18 95.5 60 71.7
Lsat_1_v5_gn_7_105200 Lactuca sativa HOM05D003356 ORTHO05D004362 1.7e-18 95.5 60 73.3
CSS0019237 Camellia sinensis var. sinensis HOM05D003356 ORTHO05D004362 2.2e-18 95.1 65 70.8
Medtr8g059125 Medicago truncatula HOM05D003356 ORTHO05D004362 2.2e-18 95.1 65 72.3
Oeu005419.1 Olea europaea HOM05D003356 ORTHO05D004362 2.2e-18 95.1 66 72.7
PSO675G9024 Papaver somniferum HOM05D003356 ORTHO05D004362 2.2e-18 95.1 67 67.2
Phvul.005G082401 Phaseolus vulgaris HOM05D003356 ORTHO05D004362 2.9e-18 94.7 64 64.1
Aqoxy4G00927 Aquilegia oxysepala HOM05D003356 ORTHO05D004362 6.5e-18 93.6 64 68.8
MSTRG.15221 Avicennia marina HOM05D003356 ORTHO05D004362 6.5e-18 93.6 69 69.6
SGA_v2.0_scaffold73G24287 Striga asiatica HOM05D003356 ORTHO05D004362 8.5e-18 93.2 68 67.6
SalBow2G3561 Salvia bowleyana HOM05D003356 ORTHO05D004362 1.1e-17 92.8 67 70.1
Migut.M00849 Erythranthe guttata HOM05D003356 ORTHO05D004362 1.4e-17 92.4 65 72.3
HanXRQChr11g0328451 Helianthus annuus HOM05D003356 ORTHO05D004362 1.4e-17 92.4 59 71.2
HanXRQChr15g0494641 Helianthus annuus HOM05D003356 ORTHO05D004362 1.4e-17 92.4 58 72.4
MSTRG.6840 Avicennia marina HOM05D003356 ORTHO05D004362 2.5e-17 91.7 67 68.7
CDE04G3674 Ceratophyllum demersum HOM05D003356 ORTHO05D004362 2.5e-17 91.7 62 67.7
DCAR_004079 Daucus carota HOM05D003356 ORTHO05D004362 2.5e-17 91.7 72 65.3
Gohir.A01G065000 Gossypium hirsutum HOM05D003356 ORTHO05D004362 4.2e-17 90.9 64 68.8
Actinidia05623 Actinidia chinensis HOM05D003356 ORTHO05D004362 9.4e-17 89.7 64 67.2
AUR62029372 Chenopodium quinoa HOM05D003356 ORTHO05D004362 1.6e-16 89.0 51 74.5
AUR62034265 Chenopodium quinoa HOM05D003356 ORTHO05D004362 1.6e-16 89.0 51 74.5
Zm00001eb065890 Zea mays HOM05D003356 ORTHO05D004362 2.1e-16 88.6 70 62.9
CDE06G0677 Ceratophyllum demersum HOM05D003356 ORTHO05D004362 2.7e-16 88.2 62 66.1
Hma1.2p1_0881F.1_g232075 Hydrangea macrophylla HOM05D003356 ORTHO05D004362 2.7e-16 88.2 63 68.3
SGA_v2.0_scaffold34G13734 Striga asiatica HOM05D003356 ORTHO05D004362 2.7e-16 88.2 68 64.7
Zm00001eb198690 Zea mays HOM05D003356 ORTHO05D004362 6.1e-16 87.0 71 62.0
Lalb_Chr19g0134281 Lupinus albus HOM05D003356 ORTHO05D004362 2.3e-15 85.1 52 75.0
HanXRQChr15g0482461 Helianthus annuus HOM05D003356 ORTHO05D004362 3.0e-15 84.7 69 60.9
Hund02220 Selenicereus undatus HOM05D003356 ORTHO05D004362 8.8e-15 83.2 50 76.0
Lsat_1_v5_gn_7_18881 Lactuca sativa HOM05D003356 ORTHO05D004362 2.0e-14 82.0 71 60.6
ECA236G4993 Erigeron canadensis HOM05D003356 ORTHO05D004362 5.7e-14 80.5 73 56.2
Os04g0681400 Oryza sativa ssp. japonica HOM05D003356 ORTHO05D004362 7.4e-14 80.1 76 53.9
unitig_37.g12574 Utricularia gibba HOM05D003356 ORTHO05D004362 1.7e-13 79.0 67 58.2
Os04g0681600 Oryza sativa ssp. japonica HOM05D003356 ORTHO05D004362 4.8e-13 77.4 76 52.6
MBI17_g30525_MAGBIO Magnolia biondii HOM05D003356 ORTHO05D004362 2.4e-12 75.1 46 76.1
DCAR_019547 Daucus carota HOM05D003356 ORTHO05D004362 5.3e-12 73.9 45 73.3
HPP92_028116 Vanilla planifolia HOM05D003356 ORTHO05D004362 2.6e-11 71.6 70 54.3
Medtr2g079490 Medicago truncatula HOM05D003356 ORTHO05D004362 3.5e-11 71.2 52 63.5
Aqoxy1G02485 Aquilegia oxysepala HOM05D003356 ORTHO05D004362 1.0e-10 69.7 41 70.7
AagrBONN_evm.TU.Sc2ySwM_228.601 Anthoceros agrestis HOM05D003356 ORTHO05D004362 1.2e-08 62.8 65 43.1
SEGI_15216 Sequoiadendron giganteum HOM05D003356 ORTHO05D004362 3.6e-08 61.2 38 68.4
Mapoly0001s0233 Marchantia polymorpha HOM05D003356 ORTHO05D004362 4.0e-07 57.8 68 44.1
Pp3c13_16790 Physcomitrium patens HOM05D003356 ORTHO05D004362 1.5e-06 55.8 46 58.7
CBR_g34644 Chara braunii HOM05D003356 ORTHO05D004362 4.4e-06 54.3 38 55.3


User provided reference genes

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