Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004544 Camellia sinensis var. sinensis HOM05D005237 ORTHO05D006189 2.4e-136 488.8 239 100.0
Actinidia07336 Actinidia chinensis HOM05D005237 ORTHO05D006189 1.2e-87 327.0 226 74.3
vmacro07739 Vaccinium macrocarpon HOM05D005237 ORTHO05D006189 3.5e-87 325.5 226 73.5
Oeu000523.1 Olea europaea HOM05D005237 ORTHO05D006189 5.9e-87 324.7 226 73.0
Dinv41456 Davidia involucrata HOM05D005237 ORTHO05D006189 7.7e-87 324.3 226 73.5
Duzib150G0783 Durio zibethinus HOM05D005237 ORTHO05D006189 3.8e-86 322.0 226 73.0
QL02p090325 Quercus lobata HOM05D005237 ORTHO05D006189 1.1e-85 320.5 225 72.9
GSVIVG01012837001 Vitis vinifera HOM05D005237 ORTHO05D006189 1.1e-85 320.5 226 73.0
Rhsim01G0059600 Rhododendron simsii HOM05D005237 ORTHO05D006189 1.5e-85 320.1 226 72.1
Lj7A437T44 Lonicera japonica HOM05D005237 ORTHO05D006189 1.9e-85 319.7 225 72.4
Lalb_Chr13g0301391 Lupinus albus HOM05D005237 ORTHO05D006189 2.5e-85 319.3 226 72.1
Ciclev10009685m.g Citrus clementina HOM05D005237 ORTHO05D006189 4.2e-85 318.5 226 73.5
Glyma.17G108800 Glycine max HOM05D005237 ORTHO05D006189 4.2e-85 318.5 226 72.1
Eucgr.C04376 Eucalyptus grandis HOM05D005237 ORTHO05D006189 9.5e-85 317.4 226 71.7
CiPaw.03G250600 Carya illinoinensis HOM05D005237 ORTHO05D006189 2.8e-84 315.8 226 71.7
Glyma.13G162500 Glycine max HOM05D005237 ORTHO05D006189 3.6e-84 315.5 226 71.7
Lj4g0017742 Lotus japonicus HOM05D005237 ORTHO05D006189 3.6e-84 315.5 226 72.1
Cpa.g.sc277.15 Carica papaya HOM05D005237 ORTHO05D006189 4.7e-84 315.1 226 71.7
Lalb_Chr12g0198311 Lupinus albus HOM05D005237 ORTHO05D006189 4.7e-84 315.1 226 70.8
Gohir.A08G089300 Gossypium hirsutum HOM05D005237 ORTHO05D006189 8.0e-84 314.3 226 70.8
Medtr4g115900 Medicago truncatula HOM05D005237 ORTHO05D006189 8.0e-84 314.3 223 71.3
Gorai.004G108300 Gossypium raimondii HOM05D005237 ORTHO05D006189 1.0e-83 313.9 227 70.9
Psat0s3428g0040 Pisum sativum HOM05D005237 ORTHO05D006189 1.0e-83 313.9 223 71.3
Haze_25466 Corylus avellana HOM05D005237 ORTHO05D006189 1.4e-83 313.5 226 71.2
Haze_25470 Corylus avellana HOM05D005237 ORTHO05D006189 1.4e-83 313.5 226 71.2
Prupe.7G251500 Prunus persica HOM05D005237 ORTHO05D006189 1.4e-83 313.5 225 71.1
TWI32G1192 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 1.4e-83 313.5 226 71.2
CsaV3_2G003270 Cucumis sativus L. HOM05D005237 ORTHO05D006189 2.3e-83 312.8 226 70.4
Potri.018G123100 Populus trichocarpa HOM05D005237 ORTHO05D006189 3.0e-83 312.4 223 71.7
ClCG11G003410 Citrullus lanatus HOM05D005237 ORTHO05D006189 4.0e-83 312.0 226 70.4
Peaxi162Scf00088g00918 Petunia axillaris HOM05D005237 ORTHO05D006189 6.8e-83 311.2 226 69.9
MD02G1020300 Malus domestica HOM05D005237 ORTHO05D006189 8.9e-83 310.8 225 70.2
AT1G60430 Arabidopsis thaliana HOM05D005237 ORTHO05D006189 1.2e-82 310.5 224 70.1
MD15G1163100 Malus domestica HOM05D005237 ORTHO05D006189 1.2e-82 310.5 225 70.2
Nitab4.5_0000704g0070 Nicotiana tabacum HOM05D005237 ORTHO05D006189 1.5e-82 310.1 226 69.5
Sabra18G0104800 Salix brachista HOM05D005237 ORTHO05D006189 1.5e-82 310.1 223 71.3
PGR102G2022 Punica granatum HOM05D005237 ORTHO05D006189 3.4e-82 308.9 223 71.3
Thhalv10023668m.g Eutrema salsugineum HOM05D005237 ORTHO05D006189 4.4e-82 308.5 224 69.2
arahy.Tifrunner.gnm1.ann1.E2H6AC Arachis hypogaea HOM05D005237 ORTHO05D006189 5.7e-82 308.1 226 70.4
EL10Ac8g18779 Beta vulgaris HOM05D005237 ORTHO05D006189 5.7e-82 308.1 223 70.0
Hma1.2p1_0343F.1_g130850 Hydrangea macrophylla HOM05D005237 ORTHO05D006189 5.7e-82 308.1 225 69.8
FvH4_3g33280 Fragaria vesca HOM05D005237 ORTHO05D006189 7.5e-82 307.8 225 71.1
FAN11G2421 Fragaria x ananassa HOM05D005237 ORTHO05D006189 7.5e-82 307.8 225 71.1
Phvul.003G171200 Phaseolus vulgaris HOM05D005237 ORTHO05D006189 7.5e-82 307.8 226 69.9
Sed0005481 Sechium edule HOM05D005237 ORTHO05D006189 7.5e-82 307.8 226 69.5
SGA_v2.0_scaffold37G14721 Striga asiatica HOM05D005237 ORTHO05D006189 7.5e-82 307.8 226 69.9
Carub.0002s0491 Capsella rubella HOM05D005237 ORTHO05D006189 9.8e-82 307.4 224 68.8
CARHR052620 Cardamine hirsuta HOM05D005237 ORTHO05D006189 9.8e-82 307.4 224 68.8
HPP92_021894 Vanilla planifolia HOM05D005237 ORTHO05D006189 9.8e-82 307.4 224 69.2
Sp2g04330 Schrenkiella parvula HOM05D005237 ORTHO05D006189 1.3e-81 307.0 224 68.8
Hund09300 Selenicereus undatus HOM05D005237 ORTHO05D006189 1.7e-81 306.6 223 70.4
AL2G16270 Arabidopsis lyrata HOM05D005237 ORTHO05D006189 2.8e-81 305.8 224 68.3
Nitab4.5_0002267g0030 Nicotiana tabacum HOM05D005237 ORTHO05D006189 2.8e-81 305.8 226 68.6
Migut.K00410 Erythranthe guttata HOM05D005237 ORTHO05D006189 3.7e-81 305.4 223 70.0
DCAR_009333 Daucus carota HOM05D005237 ORTHO05D006189 4.9e-81 305.1 225 68.9
FAN21G0596 Fragaria x ananassa HOM05D005237 ORTHO05D006189 4.9e-81 305.1 225 70.7
Aqoxy7G00028 Aquilegia oxysepala HOM05D005237 ORTHO05D006189 6.3e-81 304.7 226 69.0
Manes.14G117900 Manihot esculenta HOM05D005237 ORTHO05D006189 6.3e-81 304.7 223 70.0
PGSC0003DMG400030712 Solanum tuberosum HOM05D005237 ORTHO05D006189 6.3e-81 304.7 226 67.7
unitig_748.g7174 Utricularia gibba HOM05D005237 ORTHO05D006189 6.3e-81 304.7 225 69.3
C09p21860 Brassica napus HOM05D002152 ORTHO05D006189 8.3e-81 304.3 225 67.6
BraA09t37380Z Brassica rapa HOM05D002152 ORTHO05D006189 8.3e-81 304.3 225 67.6
Aa31LG2G10030 Aethionema arabicum HOM05D005237 ORTHO05D006189 1.4e-80 303.5 224 68.3
CDE07G1573 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 1.4e-80 303.5 225 68.4
Nn8g40617 Nelumbo nucifera HOM05D005237 ORTHO05D006189 1.4e-80 303.5 223 68.6
SalBow1G1295 Salvia bowleyana HOM05D005237 ORTHO05D006189 1.4e-80 303.5 226 69.5
A09p17560 Brassica napus HOM05D002152 ORTHO05D006189 1.8e-80 303.1 225 67.1
Atru.chr7.1980 Acer truncatum HOM05D005237 ORTHO05D006189 2.4e-80 302.8 225 70.2
Solyc07g007630.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 2.4e-80 302.8 226 67.3
Sed0006539 Sechium edule HOM05D005237 ORTHO05D006189 3.1e-80 302.4 226 67.7
Sopen07g003620 Solanum pennellii HOM05D005237 ORTHO05D006189 3.1e-80 302.4 226 66.8
BcaB07g31213 Brassica carinata HOM05D005237 ORTHO05D006189 4.1e-80 302.0 224 67.4
BcaC04g22225 Brassica carinata HOM05D005237 ORTHO05D006189 4.1e-80 302.0 224 67.4
Sc18g0000220 Simmondsia chinensis HOM05D005237 ORTHO05D006189 4.1e-80 302.0 223 68.6
Potri.006G063400 Populus trichocarpa HOM05D005237 ORTHO05D006189 5.4e-80 301.6 223 70.4
Ah.09g224420 Amaranthus hybridus HOM05D005237 ORTHO05D006189 7.0e-80 301.2 226 67.7
THA.LOC104815299 Tarenaya hassleriana HOM05D005237 ORTHO05D006189 7.0e-80 301.2 223 67.3
CANSAT11G1632 Cannabis sativa HOM05D005237 ORTHO05D006189 2.7e-79 299.3 226 68.1
ECA236G1442 Erigeron canadensis HOM05D005237 ORTHO05D006189 2.7e-79 299.3 223 67.7
MBI14_g10734_MAGBIO Magnolia biondii HOM05D005237 ORTHO05D006189 2.7e-79 299.3 228 69.3
HanXRQChr06g0180531 Helianthus annuus HOM05D005237 ORTHO05D006189 3.5e-79 298.9 223 67.3
CiPaw.04G176700 Carya illinoinensis HOM05D005237 ORTHO05D006189 2.3e-78 296.2 226 68.1
RcHm_v2.0_Chr5g0060671 Rosa chinensis HOM05D005237 ORTHO05D006189 8.6e-78 294.3 225 67.6
Lsat_1_v5_gn_8_61340 Lactuca sativa HOM05D005237 ORTHO05D006189 1.1e-77 293.9 223 65.9
Cc07_g18400 Coffea canephora HOM05D005237 ORTHO05D006189 1.9e-77 293.1 226 68.1
MSTRG.26338 Avicennia marina HOM05D005237 ORTHO05D006189 2.5e-77 292.7 226 66.8
SEGI_28631 Sequoiadendron giganteum HOM05D005237 ORTHO05D006189 1.2e-76 290.4 225 65.3
Zm00001eb238960 Zea mays HOM05D005237 ORTHO05D006189 1.8e-75 286.6 224 63.8
Zm00001eb238970 Zea mays HOM05D005237 ORTHO05D006189 1.8e-75 286.6 224 63.8
Zm00001eb438640 Zea mays HOM05D005237 ORTHO05D006189 1.8e-75 286.6 224 63.8
Zm00001eb438650 Zea mays HOM05D005237 ORTHO05D006189 1.8e-75 286.6 224 63.8
Dinv36460 Davidia involucrata HOM05D005237 ORTHO05D006189 2.3e-75 286.2 210 69.5
Zm00001eb150940 Zea mays HOM05D005237 ORTHO05D006189 5.2e-75 285.0 225 63.6
Zm00001eb238940 Zea mays HOM05D005237 ORTHO05D006189 6.8e-75 284.6 224 63.4
Gohir.D05G014800 Gossypium hirsutum HOM05D005237 ORTHO05D006189 2.6e-74 282.7 222 64.0
Gohir.A05G013700 Gossypium hirsutum HOM05D005237 ORTHO05D006189 5.8e-74 281.6 222 63.5
SHI03217 Sapria himalayana HOM05D005237 ORTHO05D006189 2.2e-73 279.6 217 65.4
Gorai.009G014900 Gossypium raimondii HOM05D005237 ORTHO05D006189 8.3e-73 277.7 224 63.4
Gohir.D08G100500 Gossypium hirsutum HOM05D005237 ORTHO05D006189 9.2e-72 274.2 209 68.9
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 3.4e-66 255.8 200 68.0
COL.COLO4_15552 Corchorus olitorius HOM05D005237 ORTHO05D006189 5.8e-66 255.0 145 86.2
BolC9t55091H Brassica oleracea HOM05D002152 ORTHO05D002737 3.7e-65 252.3 199 65.8
CDE04G0420 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 1.4e-64 250.4 202 64.9
AUR62013284 Chenopodium quinoa HOM05D005237 ORTHO05D006189 2.3e-62 243.0 147 81.0
TPR.G39824 Trifolium pratense HOM05D005237 ORTHO05D006189 3.9e-62 242.3 126 90.5
VMungo1215G1009 Vigna mungo HOM05D005237 ORTHO05D006189 6.6e-62 241.5 128 89.1
CAN.G1382.4 Capsicum annuum HOM05D005237 ORTHO05D006189 1.1e-61 240.7 127 88.2
Mapoly0002s0013 Marchantia polymorpha HOM05D005237 ORTHO05D006189 1.1e-61 240.7 227 55.1
SMO356G0108 Selaginella moellendorffii HOM05D005237 ORTHO05D006189 1.1e-61 240.7 225 53.3
TAR626G0602 Trochodendron aralioides HOM05D005237 ORTHO05D006189 1.1e-61 240.7 126 92.1
AUR62011203 Chenopodium quinoa HOM05D005237 ORTHO05D006189 1.9e-61 240.0 126 90.5
MELO3C004473.2 Cucumis melo HOM05D005237 ORTHO05D006189 2.5e-61 239.6 190 66.8
Duzib187G1805 Durio zibethinus HOM05D005237 ORTHO05D006189 4.3e-61 238.8 127 89.8
Sopen02g003910 Solanum pennellii HOM05D005237 ORTHO05D006189 9.5e-61 237.7 365 40.5
Pp3c3_23320 Physcomitrium patens HOM05D005237 ORTHO05D006189 6.2e-60 235.0 225 51.1
PSO675G7544 Papaver somniferum HOM05D005237 ORTHO05D006189 1.4e-59 233.8 237 55.7
TWI38G2392 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 1.8e-59 233.4 126 88.9
Pp3c10_12220 Physcomitrium patens HOM05D005237 ORTHO05D006189 4.0e-59 232.3 225 51.1
Os02g0235000 Oryza sativa ssp. japonica HOM05D005237 ORTHO05D006189 2.2e-57 226.5 126 82.5
FAN25G0883 Fragaria x ananassa HOM05D005237 ORTHO05D006189 6.4e-57 224.9 176 68.2
MD10G1159100 Malus domestica HOM05D005237 ORTHO05D006189 1.1e-56 224.2 126 84.9
Thecc.09G135400 Theobroma cacao HOM05D005237 ORTHO05D006189 3.5e-55 219.2 223 55.2
Lsat_1_v5_gn_7_44340 Lactuca sativa HOM05D005237 ORTHO05D006189 1.9e-53 213.4 227 50.7
Zm00001eb238980 Zea mays HOM05D005237 ORTHO05D006189 2.5e-53 213.0 185 60.5
VMungo0251G3112 Vigna mungo HOM05D005237 ORTHO05D006189 4.3e-53 212.2 177 64.4
Peaxi162Scf00113g00061 Petunia axillaris HOM05D005237 ORTHO05D006189 1.3e-49 200.7 131 75.6
Solyc02g014540.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 6.0e-47 191.8 133 69.2
Ca_21648_v3 Cicer arietinum L. HOM05D005237 ORTHO05D006189 1.6e-44 183.7 127 75.6
FAN16G0279 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.6e-39 167.2 90 91.1
Sabra06G0046100 Salix brachista HOM05D005237 ORTHO05D006189 4.6e-39 165.6 93 87.1
FAN21G3302 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.0e-38 162.9 90 90.0
FAN28G2985 Fragaria x ananassa HOM05D005237 ORTHO05D006189 9.6e-37 157.9 90 88.9
FAN17G0540 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.6e-36 157.1 100 82.0
FAN17G0595 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.6e-36 157.1 95 84.2
Eucgr.I02126 Eucalyptus grandis HOM05D005237 ORTHO05D006189 1.4e-35 154.1 79 89.9
FAN02G0796 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.1e-35 152.9 129 65.1
FAN20G0460 Fragaria x ananassa HOM05D005237 ORTHO05D006189 6.9e-35 151.8 93 81.7
PGSC0003DMG400003270 Solanum tuberosum HOM05D005237 ORTHO05D006189 2.6e-34 149.8 93 75.3
Medtr0320s0040 Medicago truncatula HOM05D005237 ORTHO05D006189 4.5e-34 149.1 88 81.8
Duzib168G1377 Durio zibethinus HOM05D005237 ORTHO05D006189 3.0e-30 136.3 72 91.7
Aa31LG9G5450 Aethionema arabicum HOM05D005237 ORTHO05D006189 2.1e-28 130.2 98 66.3
Eucgr.L01822 Eucalyptus grandis HOM05D005237 ORTHO05D006189 2.8e-28 129.8 79 79.7
FAN20G1904 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.8e-27 127.1 70 88.6
Zm00001eb302220 Zea mays HOM05D005237 ORTHO05D006189 2.0e-26 123.6 69 76.8
TAR625G1190 Trochodendron aralioides HOM05D005237 ORTHO05D006189 1.6e-23 114.0 91 64.8
Cc06_g07800 Coffea canephora HOM05D005237 ORTHO05D006189 6.2e-20 102.1 56 85.7
Cre09.g397950 Chlamydomonas reinhardtii HOM05D005237 ORTHO05D006189 4.0e-19 99.4 242 28.1
Lsat_1_v5_gn_2_45981 Lactuca sativa HOM05D005237 ORTHO05D003224 8.2e-12 75.1 36 83.3
CSS0010918 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 7.2e-08 62.0 38 71.1
CSS0009894 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.1e-07 60.5 45 62.2


User provided reference genes

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