Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004536 Camellia sinensis var. sinensis HOM05D000878 ORTHO05D018218 2.3e-27 124.8 60 100.0
Peaxi162Scf01503g00019 Petunia axillaris HOM05D000878 ORTHO05D001408 7.3e-10 66.6 56 60.7
Thecc.07G104800 Theobroma cacao HOM05D000878 ORTHO05D001408 7.3e-10 66.6 56 62.5
Actinidia12555 Actinidia chinensis HOM05D000878 ORTHO05D001408 1.2e-09 65.9 42 76.2
Actinidia31606 Actinidia chinensis HOM05D000878 ORTHO05D018218 1.2e-09 65.9 42 76.2
Rhsim06G0205300 Rhododendron simsii HOM05D000878 ORTHO05D001408 1.6e-09 65.5 42 76.2
Hma1.2p1_0580F.1_g182830 Hydrangea macrophylla HOM05D000878 ORTHO05D001408 2.8e-09 64.7 43 72.1
Atru.chr10.1706 Acer truncatum HOM05D000878 ORTHO05D001408 3.6e-09 64.3 42 71.4
Actinidia18791 Actinidia chinensis HOM05D000878 ORTHO05D001408 3.6e-09 64.3 42 73.8
Dinv14968 Davidia involucrata HOM05D000878 ORTHO05D001408 3.6e-09 64.3 42 73.8
ECA234G0163 Erigeron canadensis HOM05D000878 ORTHO05D001408 3.6e-09 64.3 42 71.4
PGR031G0857 Punica granatum HOM05D000878 ORTHO05D001408 3.6e-09 64.3 42 73.8
PGR083G1354 Punica granatum HOM05D000878 ORTHO05D001408 3.6e-09 64.3 42 71.4
Duzib170G0254 Durio zibethinus HOM05D000878 ORTHO05D001408 4.7e-09 63.9 56 58.9
Gohir.A04G038400 Gossypium hirsutum HOM05D000878 ORTHO05D001408 4.7e-09 63.9 56 58.9
Gohir.D05G344600 Gossypium hirsutum HOM05D000878 ORTHO05D001408 4.7e-09 63.9 56 58.9
Gorai.009G372600 Gossypium raimondii HOM05D000878 ORTHO05D001408 4.7e-09 63.9 56 58.9
vmacro11910 Vaccinium macrocarpon HOM05D000878 ORTHO05D001408 4.7e-09 63.9 42 73.8
Cc02_g32320 Coffea canephora HOM05D000878 ORTHO05D001408 6.2e-09 63.5 42 71.4
Cc05_g11390 Coffea canephora HOM05D000878 ORTHO05D001408 6.2e-09 63.5 42 71.4
CSS0046481 Camellia sinensis var. sinensis HOM05D000878 ORTHO05D018218 8.1e-09 63.2 45 71.1
vmacro09502 Vaccinium macrocarpon HOM05D000878 ORTHO05D001408 8.1e-09 63.2 42 71.4
DCAR_019590 Daucus carota HOM05D000878 ORTHO05D001408 1.1e-08 62.8 42 71.4
DCAR_021015 Daucus carota HOM05D000878 ORTHO05D001408 1.1e-08 62.8 42 71.4
TWI38G1905 Tripterygium wilfordii HOM05D000878 ORTHO05D001408 1.1e-08 62.8 43 69.8
Actinidia35221 Actinidia chinensis HOM05D000878 ORTHO05D001408 1.4e-08 62.4 42 73.8
Eucgr.F03251 Eucalyptus grandis HOM05D000878 ORTHO05D001408 1.4e-08 62.4 43 72.1
Nitab4.5_0000383g0300 Nicotiana tabacum HOM05D000878 ORTHO05D001408 1.4e-08 62.4 41 70.7
Nitab4.5_0001208g0020 Nicotiana tabacum HOM05D000878 ORTHO05D001408 1.4e-08 62.4 41 70.7
Nitab4.5_0000035g0050 Nicotiana tabacum HOM05D000878 ORTHO05D001408 1.8e-08 62.0 55 58.2
Nitab4.5_0005440g0040 Nicotiana tabacum HOM05D000878 ORTHO05D001408 1.8e-08 62.0 55 58.2
Potri.011G096300 Populus trichocarpa HOM05D000878 ORTHO05D001408 1.8e-08 62.0 43 69.8
Sabra11G0092600 Salix brachista HOM05D000878 ORTHO05D001408 1.8e-08 62.0 43 69.8
VMungo1127G2118 Vigna mungo HOM05D000878 ORTHO05D001408 1.8e-08 62.0 57 59.6
Gohir.A01G057700 Gossypium hirsutum HOM05D000878 ORTHO05D001408 2.3e-08 61.6 56 57.1
Gohir.D01G044100 Gossypium hirsutum HOM05D000878 ORTHO05D001408 2.3e-08 61.6 56 57.1
Gorai.002G063300 Gossypium raimondii HOM05D000878 ORTHO05D001408 2.3e-08 61.6 56 57.1
Hma1.2p1_0416F.1_g148670 Hydrangea macrophylla HOM05D000878 ORTHO05D001408 2.3e-08 61.6 41 70.7
Nn1g04356 Nelumbo nucifera HOM05D000878 ORTHO05D001408 2.3e-08 61.6 42 71.4
Nn1g09065 Nelumbo nucifera HOM05D000878 ORTHO05D001408 2.3e-08 61.6 41 73.2
Aa31LG8G2230 Aethionema arabicum HOM05D000878 ORTHO05D001408 3.1e-08 61.2 43 69.8
BcaB07g33344 Brassica carinata HOM05D000878 ORTHO05D001408 4.0e-08 60.8 57 54.4
ECA240G4101 Erigeron canadensis HOM05D000878 ORTHO05D001408 4.0e-08 60.8 42 69.0
Eucgr.F01209 Eucalyptus grandis HOM05D000878 ORTHO05D001408 4.0e-08 60.8 47 63.8
Lj1A833T51 Lonicera japonica HOM05D000878 ORTHO05D001408 4.0e-08 60.8 42 66.7
GSVIVG01021185001 Vitis vinifera HOM05D000878 ORTHO05D001408 4.0e-08 60.8 53 60.4
A06p01110 Brassica napus HOM05D000878 ORTHO05D001408 5.2e-08 60.5 43 67.4
BraA06t23338Z Brassica rapa HOM05D000878 ORTHO05D001408 5.2e-08 60.5 43 67.4
CAN.G292.7 Capsicum annuum HOM05D000878 ORTHO05D001408 5.2e-08 60.5 55 58.2
MBI06_g18012_MAGBIO Magnolia biondii HOM05D000878 ORTHO05D001408 5.2e-08 60.5 43 69.8
Potri.001G376500 Populus trichocarpa HOM05D000878 ORTHO05D001408 5.2e-08 60.5 57 56.1
Potri.004G054200 Populus trichocarpa HOM05D000878 ORTHO05D001408 5.2e-08 60.5 42 66.7
BcaB04g17101 Brassica carinata HOM05D000878 ORTHO05D001408 6.8e-08 60.1 57 54.4
Ciclev10016114m.g Citrus clementina HOM05D000878 ORTHO05D001408 6.8e-08 60.1 42 69.0
Oeu031214.2 Olea europaea HOM05D000878 ORTHO05D001408 6.8e-08 60.1 56 55.4
Rhsim04G0024600 Rhododendron simsii HOM05D000878 ORTHO05D001408 6.8e-08 60.1 42 66.7
TWI39G0631 Tripterygium wilfordii HOM05D000878 ORTHO05D001408 6.8e-08 60.1 43 67.4
COL.COLO4_17607 Corchorus olitorius HOM05D000878 ORTHO05D006327 8.9e-08 59.7 56 55.4
HanXRQChr10g0304821 Helianthus annuus HOM05D000878 ORTHO05D001408 8.9e-08 59.7 56 55.4
Lsat_1_v5_gn_5_127301 Lactuca sativa HOM05D000878 ORTHO05D001408 8.9e-08 59.7 42 66.7
PSO063G4507 Papaver somniferum HOM05D000878 ORTHO05D001408 8.9e-08 59.7 43 65.1
PSO782G1666 Papaver somniferum HOM05D000878 ORTHO05D001408 8.9e-08 59.7 43 65.1
TAR629G1834 Trochodendron aralioides HOM05D000878 ORTHO05D001408 8.9e-08 59.7 42 66.7
AL1G61640 Arabidopsis lyrata HOM05D000878 ORTHO05D001408 1.2e-07 59.3 43 65.1
AT1G53240 Arabidopsis thaliana HOM05D000878 ORTHO05D001408 1.2e-07 59.3 43 65.1
BcaB01g01549 Brassica carinata HOM05D000878 ORTHO05D001408 1.2e-07 59.3 43 65.1
BcaB02g10943 Brassica carinata HOM05D000878 ORTHO05D001408 1.2e-07 59.3 43 65.1
BcaC01g01371 Brassica carinata HOM05D000878 ORTHO05D001408 1.2e-07 59.3 43 65.1
BcaC08g43513 Brassica carinata HOM05D000878 ORTHO05D001408 1.2e-07 59.3 43 65.1
BcaC08g44067 Brassica carinata HOM05D000878 ORTHO05D001408 1.2e-07 59.3 43 65.1
A05p18470 Brassica napus HOM05D000878 ORTHO05D001408 1.2e-07 59.3 43 65.1
A08p01720 Brassica napus HOM05D000878 ORTHO05D001408 1.2e-07 59.3 43 65.1
C03p91280 Brassica napus HOM05D000878 ORTHO05D001408 1.2e-07 59.3 43 65.1
C06p09010 Brassica napus HOM05D000878 ORTHO05D001408 1.2e-07 59.3 43 65.1
C06p14630 Brassica napus HOM05D000878 ORTHO05D001408 1.2e-07 59.3 43 65.1
BolC3t21444H Brassica oleracea HOM05D000878 ORTHO05D001408 1.2e-07 59.3 43 65.1
BolC6t35979H Brassica oleracea HOM05D000878 ORTHO05D001408 1.2e-07 59.3 43 65.1
BolC6t36644H Brassica oleracea HOM05D000878 ORTHO05D001408 1.2e-07 59.3 43 65.1
BraA05t20739Z Brassica rapa HOM05D000878 ORTHO05D001408 1.2e-07 59.3 43 65.1
BraA08t32225Z Brassica rapa HOM05D000878 ORTHO05D001408 1.2e-07 59.3 43 65.1
CANSAT35G0995 Cannabis sativa HOM05D000878 ORTHO05D001408 1.2e-07 59.3 42 69.0
Carub.0001s4242 Capsella rubella HOM05D000878 ORTHO05D001408 1.2e-07 59.3 43 65.1
CARHR043460 Cardamine hirsuta HOM05D000878 ORTHO05D001408 1.2e-07 59.3 43 65.1
Thhalv10011552m.g Eutrema salsugineum HOM05D000878 ORTHO05D001408 1.2e-07 59.3 43 65.1
Glyma.12G159300 Glycine max HOM05D000878 ORTHO05D001408 1.2e-07 59.3 57 57.9
Peaxi162Scf00069g02021 Petunia axillaris HOM05D000878 ORTHO05D001408 1.2e-07 59.3 42 61.9
Prupe.4G170500 Prunus persica HOM05D000878 ORTHO05D001408 1.2e-07 59.3 42 69.0
Sabra16G0247900 Salix brachista HOM05D000878 ORTHO05D001408 1.2e-07 59.3 57 56.1
Sp1g39810 Schrenkiella parvula HOM05D000878 ORTHO05D001408 1.2e-07 59.3 43 65.1
Solyc12g014180.2 Solanum lycopersicum HOM05D000878 ORTHO05D001408 1.2e-07 59.3 55 56.4
HPP92_004046 Vanilla planifolia HOM05D000878 ORTHO05D001408 1.2e-07 59.3 42 66.7
Aqoxy4G00476 Aquilegia oxysepala HOM05D000878 ORTHO05D001408 1.5e-07 58.9 54 59.3
arahy.Tifrunner.gnm1.ann1.3PZ9K2 Arachis hypogaea HOM05D000878 ORTHO05D001408 1.5e-07 58.9 43 69.8
FAN16G1257 Fragaria x ananassa HOM05D000878 ORTHO05D001408 1.5e-07 58.9 42 66.7
FAN21G0131 Fragaria x ananassa HOM05D000878 ORTHO05D001408 1.5e-07 58.9 42 66.7
QL08p026900 Quercus lobata HOM05D000878 ORTHO05D001408 1.5e-07 58.9 42 69.0
CsaV3_4G008360 Cucumis sativus L. HOM05D000878 ORTHO05D001408 2.0e-07 58.5 55 54.5
FvH4_3g18670 Fragaria vesca HOM05D000878 ORTHO05D001408 2.0e-07 58.5 42 66.7
FAN11G1858 Fragaria x ananassa HOM05D000878 ORTHO05D001408 2.0e-07 58.5 42 66.7
Lj8A151T52 Lonicera japonica HOM05D000878 ORTHO05D001408 2.0e-07 58.5 42 66.7
HPP92_024033 Vanilla planifolia HOM05D000878 ORTHO05D018218 2.0e-07 58.5 42 66.7
GSVIVG01014231001 Vitis vinifera HOM05D000878 ORTHO05D001408 2.0e-07 58.5 42 66.7
CSS0050211 Camellia sinensis var. sinensis HOM05D000878 ORTHO05D001408 2.6e-07 58.2 42 66.7
Cfa019593 Carpinus fangiana HOM05D000878 ORTHO05D001408 2.6e-07 58.2 56 53.6
Duzib235G0391 Durio zibethinus HOM05D000878 ORTHO05D001408 2.6e-07 58.2 42 64.3
Lalb_Chr19g0133911 Lupinus albus HOM05D000878 ORTHO05D001408 2.6e-07 58.2 57 56.1
Sopen12g005970 Solanum pennellii HOM05D000878 ORTHO05D001408 2.6e-07 58.2 55 54.5
Cpa.g.sc131.66 Carica papaya HOM05D000878 ORTHO05D001408 3.4e-07 57.8 42 64.3
Ciclev10008562m.g Citrus clementina HOM05D000878 ORTHO05D001408 3.4e-07 57.8 55 52.7
HanXRQChr12g0373491 Helianthus annuus HOM05D000878 ORTHO05D001408 3.4e-07 57.8 42 64.3
MD11G1259400 Malus domestica HOM05D000878 ORTHO05D001408 3.4e-07 57.8 42 64.3
Prupe.4G058400 Prunus persica HOM05D000878 ORTHO05D001408 3.4e-07 57.8 42 64.3
THA.LOC104798756 Tarenaya hassleriana HOM05D000878 ORTHO05D001408 3.4e-07 57.8 56 51.8
Ca_23060_v3 Cicer arietinum L. HOM05D000878 ORTHO05D001408 4.4e-07 57.4 43 65.1
Haze_09352 Corylus avellana HOM05D000878 ORTHO05D001408 4.4e-07 57.4 42 64.3
FAN25G1611 Fragaria x ananassa HOM05D000878 ORTHO05D001408 4.4e-07 57.4 42 64.3
Manes.03G103200 Manihot esculenta HOM05D000878 ORTHO05D001408 4.4e-07 57.4 43 67.4
Phvul.011G159000 Phaseolus vulgaris HOM05D000878 ORTHO05D001408 4.4e-07 57.4 57 56.1
RcHm_v2.0_Chr5g0031491 Rosa chinensis HOM05D000878 ORTHO05D001408 4.4e-07 57.4 42 64.3
Solyc07g062650.4 Solanum lycopersicum HOM05D000878 ORTHO05D001408 4.4e-07 57.4 42 64.3
Sopen07g030880 Solanum pennellii HOM05D000878 ORTHO05D001408 4.4e-07 57.4 42 64.3
PGSC0003DMG400012395 Solanum tuberosum HOM05D000878 ORTHO05D001408 4.4e-07 57.4 42 64.3
PGSC0003DMG400015379 Solanum tuberosum HOM05D000878 ORTHO05D001408 4.4e-07 57.4 55 54.5
CiPaw.11G163200 Carya illinoinensis HOM05D000878 ORTHO05D001408 5.8e-07 57.0 56 55.4
Sc16g0007440 Simmondsia chinensis HOM05D000878 ORTHO05D001408 5.8e-07 57.0 42 64.3
AL3G27360 Arabidopsis lyrata HOM05D000878 ORTHO05D001408 7.6e-07 56.6 43 65.1
AT3G15020 Arabidopsis thaliana HOM05D000878 ORTHO05D001408 7.6e-07 56.6 43 65.1
arahy.Tifrunner.gnm1.ann1.9BBP6D Arachis hypogaea HOM05D000878 ORTHO05D001408 7.6e-07 56.6 43 67.4
CAN.G162.21 Capsicum annuum HOM05D000878 ORTHO05D001408 7.6e-07 56.6 41 65.9
ClCG07G009970 Citrullus lanatus HOM05D000878 ORTHO05D001408 9.9e-07 56.2 55 52.7
MELO3C016095.2 Cucumis melo HOM05D000878 ORTHO05D001408 9.9e-07 56.2 55 52.7
BcaC08g44064 Brassica carinata HOM05D000878 ORTHO05D001408 1.3e-06 55.8 43 60.5
BolC6t36642H Brassica oleracea HOM05D000878 ORTHO05D001408 1.3e-06 55.8 43 60.5
Medtr8g463760 Medicago truncatula HOM05D000878 ORTHO05D001408 1.3e-06 55.8 43 65.1
THA.LOC104815567 Tarenaya hassleriana HOM05D000878 ORTHO05D001408 1.3e-06 55.8 56 51.8
Aa31LG10G1910 Aethionema arabicum HOM05D000878 ORTHO05D001408 1.7e-06 55.5 43 60.5
Lalb_Chr01g0006731 Lupinus albus HOM05D000878 ORTHO05D001408 1.7e-06 55.5 43 65.1
Lalb_Chr03g0031071 Lupinus albus HOM05D000878 ORTHO05D001408 1.7e-06 55.5 43 65.1
Sp3g13220 Schrenkiella parvula HOM05D000878 ORTHO05D001408 1.7e-06 55.5 43 62.8
CSS0010136 Camellia sinensis var. sinensis HOM05D000878 ORTHO05D018218 2.2e-06 55.1 24 100.0
MD03G1240100 Malus domestica HOM05D000878 ORTHO05D001408 2.2e-06 55.1 42 59.5
Manes.15G091900 Manihot esculenta HOM05D000878 ORTHO05D001408 2.2e-06 55.1 43 62.8
Thecc.06G174300 Theobroma cacao HOM05D000878 ORTHO05D001408 2.2e-06 55.1 42 64.3
SalBow7G4777 Salvia bowleyana HOM05D000878 ORTHO05D001408 2.9e-06 54.7 55 49.1
Lj3g0017702 Lotus japonicus HOM05D000878 ORTHO05D001408 3.7e-06 54.3 43 62.8
Hund02248 Selenicereus undatus HOM05D000878 ORTHO05D001408 3.7e-06 54.3 42 59.5
TPR.G22541 Trifolium pratense HOM05D000878 ORTHO05D001408 3.7e-06 54.3 43 62.8
unitig_749.g13534 Utricularia gibba HOM05D000878 ORTHO05D001408 3.7e-06 54.3 39 66.7
ATR0602G293 Amborella trichopoda HOM05D000878 ORTHO05D001408 4.9e-06 53.9 42 61.9
Os01g0649100 Oryza sativa ssp. japonica HOM05D000878 ORTHO05D001408 4.9e-06 53.9 55 52.7
Zm00001eb158270 Zea mays HOM05D000878 ORTHO05D001408 4.9e-06 53.9 55 52.7
CARHR089980 Cardamine hirsuta HOM05D000878 ORTHO05D001408 6.4e-06 53.5 57 50.9
Oeu005392.1 Olea europaea HOM05D000878 ORTHO05D001408 6.4e-06 53.5 56 50.0
Sed0011466 Sechium edule HOM05D000878 ORTHO05D001408 6.4e-06 53.5 42 59.5
SEGI_02445 Sequoiadendron giganteum HOM05D000878 ORTHO05D001408 6.4e-06 53.5 54 53.7
MSTRG.14954 Avicennia marina HOM05D000878 ORTHO05D001408 8.4e-06 53.1 56 48.2
Sed0017885 Sechium edule HOM05D000878 ORTHO05D001408 8.4e-06 53.1 42 59.5


User provided reference genes

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