Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004487 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 9.3e-86 320.1 153 100.0
CSS0028931 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 3.3e-75 285.0 167 83.8
CSS0050453 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 2.8e-74 282.0 167 82.6
CSS0031502 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 3.1e-73 278.5 167 82.6
CSS0000454 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 2.6e-72 275.4 167 81.4
CSS0050092 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 2.2e-71 272.3 171 80.1
CSS0033656 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 5.1e-68 261.2 149 85.9
CSS0044724 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 2.8e-66 255.4 153 84.3
CSS0024873 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 1.6e-64 249.6 153 83.0
CSS0016678 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 4.1e-57 224.9 168 70.2
Rhsim10G0191400 Rhododendron simsii HOM05D000649 ORTHO05D000513 1.4e-28 130.2 76 77.6
vmacro20607 Vaccinium macrocarpon HOM05D000649 ORTHO05D000513 3.7e-26 122.1 80 68.8
Cpa.g.sc26.10 Carica papaya HOM05D000649 ORTHO05D000513 3.0e-23 112.5 104 50.0
Actinidia22858 Actinidia chinensis HOM05D000649 ORTHO05D000513 1.5e-22 110.2 77 70.1
TAR628G0170 Trochodendron aralioides HOM05D000649 ORTHO05D000513 1.5e-22 110.2 95 54.7
Nn5g31051 Nelumbo nucifera HOM05D000649 ORTHO05D000513 5.6e-22 108.2 75 64.0
Hma1.2p1_0085F.1_g044350 Hydrangea macrophylla HOM05D000649 ORTHO05D000513 8.1e-21 104.4 92 54.3
TAR381G0051 Trochodendron aralioides HOM05D000649 ORTHO05D000513 1.1e-20 104.0 95 49.5
Atru.chr13.58 Acer truncatum HOM05D000649 ORTHO05D000513 4.0e-20 102.1 90 53.3
Manes.05G127900 Manihot esculenta HOM05D000649 ORTHO05D000513 4.0e-20 102.1 83 54.2
TAR376G0834 Trochodendron aralioides HOM05D000649 ORTHO05D000513 5.2e-20 101.7 95 50.5
Potri.002G004600 Populus trichocarpa HOM05D000649 ORTHO05D000513 8.9e-20 100.9 102 49.0
Prupe.5G005300 Prunus persica HOM05D000649 ORTHO05D000513 2.0e-19 99.8 110 42.7
CiPaw.07G133300 Carya illinoinensis HOM05D000649 ORTHO05D000513 2.6e-19 99.4 92 51.1
Hma1.2p1_0699F.1_g205730 Hydrangea macrophylla HOM05D000649 ORTHO05D000513 3.4e-19 99.0 83 50.6
Aqoxy6G02997 Aquilegia oxysepala HOM05D000649 ORTHO05D000513 2.2e-18 96.3 91 50.5
Haze_22865 Corylus avellana HOM05D000649 ORTHO05D000513 2.2e-18 96.3 92 48.9
CARHR070020 Cardamine hirsuta HOM05D000649 ORTHO05D000513 3.7e-18 95.5 76 53.9
THA.LOC104813737 Tarenaya hassleriana HOM05D000649 ORTHO05D000513 3.7e-18 95.5 76 52.6
Nitab4.5_0010897g0010 Nicotiana tabacum HOM05D000649 ORTHO05D000513 4.9e-18 95.1 76 53.9
AL2G36600 Arabidopsis lyrata HOM05D000649 ORTHO05D000513 6.4e-18 94.7 83 49.4
CiPaw.08G077300 Carya illinoinensis HOM05D000649 ORTHO05D000513 6.4e-18 94.7 94 46.8
Sabra02G0003100 Salix brachista HOM05D000649 ORTHO05D000513 6.4e-18 94.7 95 47.4
Sopen04g036410 Solanum pennellii HOM05D000649 ORTHO05D000513 6.4e-18 94.7 83 49.4
PGSC0003DMG400009999 Solanum tuberosum HOM05D000649 ORTHO05D000513 6.4e-18 94.7 95 46.3
Glyma.06G014300 Glycine max HOM05D000649 ORTHO05D000513 8.3e-18 94.4 76 52.6
Manes.18G001800 Manihot esculenta HOM05D000649 ORTHO05D000513 8.3e-18 94.4 76 55.3
PSO675G8806 Papaver somniferum HOM05D000649 ORTHO05D000513 8.3e-18 94.4 111 43.2
arahy.Tifrunner.gnm1.ann1.T7FLND Arachis hypogaea HOM05D000649 ORTHO05D000513 1.1e-17 94.0 117 41.9
CSS0025109 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D000513 1.1e-17 94.0 76 52.6
Rhsim06G0003000 Rhododendron simsii HOM05D000649 ORTHO05D000513 1.1e-17 94.0 108 44.4
TWI36G1513 Tripterygium wilfordii HOM05D000649 ORTHO05D000513 1.1e-17 94.0 76 56.6
Lalb_Chr08g0246551 Lupinus albus HOM05D000649 ORTHO05D000513 1.4e-17 93.6 83 47.0
Cfa014139 Carpinus fangiana HOM05D001065 ORTHO05D000513 1.9e-17 93.2 119 42.9
Nn6g31618 Nelumbo nucifera HOM05D000649 ORTHO05D000513 1.9e-17 93.2 116 44.8
QL02p015755 Quercus lobata HOM05D000649 ORTHO05D000513 1.9e-17 93.2 83 48.2
VMungo1309G1435 Vigna mungo HOM05D000649 ORTHO05D000513 1.9e-17 93.2 76 51.3
Actinidia17079 Actinidia chinensis HOM05D000649 ORTHO05D000513 2.4e-17 92.8 117 42.7
Dinv13765 Davidia involucrata HOM05D000649 ORTHO05D000513 2.4e-17 92.8 76 52.6
Prupe.7G186900 Prunus persica HOM05D000649 ORTHO05D000513 2.4e-17 92.8 75 54.7
Ca_04244_v3 Cicer arietinum L. HOM05D000649 ORTHO05D000513 3.2e-17 92.4 100 44.0
Ca_15383_v3 Cicer arietinum L. HOM05D000649 ORTHO05D000513 3.2e-17 92.4 100 44.0
Cc10_g00240 Coffea canephora HOM05D000649 ORTHO05D000513 3.2e-17 92.4 95 43.2
Carub.0002s2338 Capsella rubella HOM05D000649 ORTHO05D000513 4.1e-17 92.0 76 51.3
Lalb_Chr23g0265501 Lupinus albus HOM05D000649 ORTHO05D000513 4.1e-17 92.0 69 53.6
MBI01_g28406_MAGBIO Magnolia biondii HOM05D000649 ORTHO05D000513 5.4e-17 91.7 106 47.2
Sp5g31630 Schrenkiella parvula HOM05D000649 ORTHO05D000513 5.4e-17 91.7 99 45.5
A07p42130 Brassica napus HOM05D000649 ORTHO05D000513 9.2e-17 90.9 76 52.6
AT1G76460 Arabidopsis thaliana HOM05D000649 ORTHO05D000513 1.2e-16 90.5 76 50.0
Eucgr.J02558 Eucalyptus grandis HOM05D000649 ORTHO05D000513 1.2e-16 90.5 76 51.3
Lalb_Chr11g0061361 Lupinus albus HOM05D000649 ORTHO05D000513 1.2e-16 90.5 76 50.0
MD06G1004000 Malus domestica HOM05D000649 ORTHO05D000513 1.2e-16 90.5 78 48.7
Psat5g008440 Pisum sativum HOM05D000649 ORTHO05D000513 1.2e-16 90.5 83 47.0
Actinidia15526 Actinidia chinensis HOM05D000649 ORTHO05D000513 1.6e-16 90.1 76 51.3
FAN23G1151 Fragaria x ananassa HOM05D000649 ORTHO05D000513 1.6e-16 90.1 96 46.9
FAN26G0796 Fragaria x ananassa HOM05D000649 ORTHO05D000513 1.6e-16 90.1 96 46.9
Glyma.04G014300 Glycine max HOM05D000649 ORTHO05D000513 2.1e-16 89.7 77 51.9
Lj1g0016936 Lotus japonicus HOM05D000649 ORTHO05D000513 2.1e-16 89.7 83 45.8
THA.LOC104812008 Tarenaya hassleriana HOM05D000649 ORTHO05D000513 2.1e-16 89.7 76 48.7
TWI56G0525 Tripterygium wilfordii HOM05D000649 ORTHO05D000513 2.1e-16 89.7 76 55.3
Dinv05494 Davidia involucrata HOM05D000649 ORTHO05D000513 2.7e-16 89.4 76 47.4
Lj2C505G3 Lonicera japonica HOM05D000649 ORTHO05D000513 2.7e-16 89.4 83 50.6
Potri.005G256700 Populus trichocarpa HOM05D000649 ORTHO05D000513 2.7e-16 89.4 102 42.2
Sabra05G0198800 Salix brachista HOM05D000649 ORTHO05D000513 2.7e-16 89.4 77 50.6
Thhalv10018983m.g Eutrema salsugineum HOM05D000649 ORTHO05D000513 3.5e-16 89.0 76 50.0
FvH4_1g09990 Fragaria vesca HOM05D000649 ORTHO05D000513 3.5e-16 89.0 99 46.5
FAN23G2635 Fragaria x ananassa HOM05D000649 ORTHO05D000513 3.5e-16 89.0 96 46.9
PSO541G2048 Papaver somniferum HOM05D000649 ORTHO05D000513 3.5e-16 89.0 111 40.5
TWI12G0980 Tripterygium wilfordii HOM05D000649 ORTHO05D000513 6.0e-16 88.2 76 53.9
COL.COLO4_12296 Corchorus olitorius HOM05D000649 ORTHO05D000513 7.8e-16 87.8 76 47.4
Ciclev10003364m.g Citrus clementina HOM05D000649 ORTHO05D000513 1.0e-15 87.4 76 48.7
Medtr3g116130 Medicago truncatula HOM05D000649 ORTHO05D000513 1.0e-15 87.4 101 42.6
Phvul.009G008600 Phaseolus vulgaris HOM05D000649 ORTHO05D000513 1.0e-15 87.4 76 50.0
Sc26g0004760 Simmondsia chinensis HOM05D000649 ORTHO05D000513 1.0e-15 87.4 76 48.7
RcHm_v2.0_Chr2g0096781 Rosa chinensis HOM05D000649 ORTHO05D000513 1.3e-15 87.0 99 44.4
Gohir.D01G086900 Gossypium hirsutum HOM05D000649 ORTHO05D000513 1.7e-15 86.7 100 43.0
Gorai.002G112500 Gossypium raimondii HOM05D000649 ORTHO05D000513 1.7e-15 86.7 100 43.0
DCAR_016799 Daucus carota HOM05D000649 ORTHO05D000513 2.3e-15 86.3 73 53.4
Duzib116G0655 Durio zibethinus HOM05D000649 ORTHO05D000513 2.3e-15 86.3 86 43.0
Gohir.A01G101800 Gossypium hirsutum HOM05D000649 ORTHO05D000513 2.3e-15 86.3 101 43.6
Thecc.08G099600 Theobroma cacao HOM05D000649 ORTHO05D000513 2.3e-15 86.3 76 46.1
BcaC08g47242 Brassica carinata HOM05D000649 ORTHO05D000513 3.0e-15 85.9 76 50.0
C06p50700 Brassica napus HOM05D000649 ORTHO05D000513 3.0e-15 85.9 76 50.0
BolC6t40096H Brassica oleracea HOM05D000649 ORTHO05D000513 3.0e-15 85.9 76 50.0
HanXRQChr16g0532161 Helianthus annuus HOM05D000649 ORTHO05D000513 3.9e-15 85.5 85 45.9
Duzib093G1313 Durio zibethinus HOM05D000649 ORTHO05D000513 6.6e-15 84.7 78 48.7
TPR.G38167 Trifolium pratense HOM05D000649 ORTHO05D000513 8.6e-15 84.3 98 43.9
Aa31LG7G5040 Aethionema arabicum HOM05D000649 ORTHO05D000513 1.1e-14 84.0 105 42.9
BcaC08g47153 Brassica carinata HOM05D000649 ORTHO05D000513 1.5e-14 83.6 76 47.4
ECA246G2133 Erigeron canadensis HOM05D000649 ORTHO05D000513 1.5e-14 83.6 85 43.5
MD00G1148300 Malus domestica HOM05D000649 ORTHO05D000513 1.5e-14 83.6 107 39.3
Aa31LG4G6550 Aethionema arabicum HOM05D000649 ORTHO05D000513 1.9e-14 83.2 77 48.1
arahy.Tifrunner.gnm1.ann1.63TST2 Arachis hypogaea HOM05D000649 ORTHO05D000513 1.9e-14 83.2 118 39.8
BraA07t31742Z Brassica rapa HOM05D000649 ORTHO05D000513 2.5e-14 82.8 76 48.7
ClCG08G009160 Citrullus lanatus HOM05D000649 ORTHO05D000513 2.5e-14 82.8 75 48.0
Eucgr.F03603 Eucalyptus grandis HOM05D000649 ORTHO05D000513 2.5e-14 82.8 111 42.3
FAN28G0025 Fragaria x ananassa HOM05D000649 ORTHO05D000513 2.5e-14 82.8 90 46.7
PGR083G0393 Punica granatum HOM05D000649 ORTHO05D000513 2.5e-14 82.8 134 39.6
vmacro21765 Vaccinium macrocarpon HOM05D000649 ORTHO05D000513 5.6e-14 81.6 77 49.4
SalBow6G0043 Salvia bowleyana HOM05D000649 ORTHO05D000513 7.3e-14 81.3 78 43.6
MELO3C026514.2 Cucumis melo HOM05D000649 ORTHO05D000513 9.5e-14 80.9 75 46.7
CsaV3_6G035960 Cucumis sativus L. HOM05D000649 ORTHO05D000513 9.5e-14 80.9 75 46.7
DCAR_013943 Daucus carota HOM05D000649 ORTHO05D014141 9.5e-14 80.9 77 48.1
MD02G1108800 Malus domestica HOM05D000649 ORTHO05D000513 1.2e-13 80.5 73 50.7
MD15G1228000 Malus domestica HOM05D000649 ORTHO05D000513 1.2e-13 80.5 73 52.1
Migut.N02989 Erythranthe guttata HOM05D000649 ORTHO05D000513 2.1e-13 79.7 76 42.1
Oeu039086.1 Olea europaea HOM05D000649 ORTHO05D014141 2.8e-13 79.3 95 38.9
SGA_v2.0_scaffold220G42643 Striga asiatica HOM05D000649 ORTHO05D000513 2.8e-13 79.3 92 37.0
ATR0605G253 Amborella trichopoda HOM05D000649 ORTHO05D000513 6.2e-13 78.2 70 44.3
Eucgr.I02201 Eucalyptus grandis HOM05D000649 ORTHO05D000513 6.2e-13 78.2 107 41.1
PSO017G1691 Papaver somniferum HOM05D000649 ORTHO05D000513 6.2e-13 78.2 76 50.0
Sed0009990 Sechium edule HOM05D000649 ORTHO05D000513 6.2e-13 78.2 75 44.0
CDE05G1430 Ceratophyllum demersum HOM05D000649 ORTHO05D000513 8.1e-13 77.8 64 46.9
Oeu030360.2 Olea europaea HOM05D000649 ORTHO05D000513 8.1e-13 77.8 79 45.6
Oeu042506.1 Olea europaea HOM05D000649 ORTHO05D000513 8.1e-13 77.8 94 38.3
unitig_578.g16241 Utricularia gibba HOM05D000649 ORTHO05D000513 1.1e-12 77.4 79 44.3
PSO170G5065 Papaver somniferum HOM05D000649 ORTHO05D000513 1.8e-12 76.6 76 48.7
CANSAT25G2852 Cannabis sativa HOM05D000649 ORTHO05D000513 2.3e-12 76.3 75 44.0
MSTRG.24518 Avicennia marina HOM05D000649 ORTHO05D000513 3.1e-12 75.9 83 37.3
HanXRQChr09g0241921 Helianthus annuus HOM05D000649 ORTHO05D000513 3.1e-12 75.9 76 47.4
Thhalv10008444m.g Eutrema salsugineum HOM05D000649 ORTHO05D000513 4.0e-12 75.5 98 41.8
unitig_8.g4815 Utricularia gibba HOM05D000649 ORTHO05D000513 5.2e-12 75.1 84 40.5
AL1G33900 Arabidopsis lyrata HOM05D000649 ORTHO05D000513 8.9e-12 74.3 98 41.8
ECA232G1614 Erigeron canadensis HOM05D000649 ORTHO05D000513 8.9e-12 74.3 76 48.7
Lj4C242G3 Lonicera japonica HOM05D000649 ORTHO05D000513 8.9e-12 74.3 72 44.4
Manes.02G116700 Manihot esculenta HOM05D000649 ORTHO05D000513 1.5e-11 73.6 103 40.8
Oeu013568.1 Olea europaea HOM05D000649 ORTHO05D000513 1.5e-11 73.6 87 37.9
Cc07_g12210 Coffea canephora HOM05D000649 ORTHO05D000513 2.0e-11 73.2 89 43.8
MBI04_g31210_MAGBIO Magnolia biondii HOM05D000649 ORTHO05D000513 2.0e-11 73.2 50 58.0
RcHm_v2.0_Chr7g0216701 Rosa chinensis HOM05D000649 ORTHO05D000513 2.0e-11 73.2 75 46.7
ECA238G0875 Erigeron canadensis HOM05D000649 ORTHO05D000513 5.8e-11 71.6 97 36.1
CDE05G1023 Ceratophyllum demersum HOM05D000649 ORTHO05D000513 7.6e-11 71.2 70 41.4
Sed0025783 Sechium edule HOM05D000649 ORTHO05D000513 7.6e-11 71.2 95 37.9
SEGI_17423 Sequoiadendron giganteum HOM05D000649 ORTHO05D000513 7.6e-11 71.2 82 40.2
PGR031G0467 Punica granatum HOM05D000649 ORTHO05D000513 9.9e-11 70.9 93 36.6
AUR62035172 Chenopodium quinoa HOM05D000649 ORTHO05D000513 1.3e-10 70.5 97 40.2
Carub.0001s2035 Capsella rubella HOM05D000649 ORTHO05D000513 2.2e-10 69.7 79 43.0
DCAR_009860 Daucus carota HOM05D000649 ORTHO05D000513 2.2e-10 69.7 87 47.1
AT1G20880 Arabidopsis thaliana HOM05D000649 ORTHO05D000513 3.8e-10 68.9 56 55.4
MSTRG.22081 Avicennia marina HOM05D000649 ORTHO05D000513 3.8e-10 68.9 95 37.9
FAN18G2507 Fragaria x ananassa HOM05D000649 ORTHO05D000513 1.1e-09 67.4 85 40.0
CARHR021310 Cardamine hirsuta HOM05D000649 ORTHO05D000513 1.9e-09 66.6 95 41.1
Lj4A240G32 Lonicera japonica HOM05D000649 ORTHO05D000513 1.9e-09 66.6 80 40.0
FAN08G0068 Fragaria x ananassa HOM05D000649 ORTHO05D000513 2.4e-09 66.2 86 40.7
FAN04G1603 Fragaria x ananassa HOM05D000649 ORTHO05D000513 5.4e-09 65.1 85 38.8
Lsat_1_v5_gn_9_48300 Lactuca sativa HOM05D000649 ORTHO05D000513 5.4e-09 65.1 82 43.9
BraA08t34853Z Brassica rapa HOM05D000649 ORTHO05D000513 7.1e-09 64.7 80 40.0
Ciclev10026337m.g Citrus clementina HOM05D000649 ORTHO05D000513 7.1e-09 64.7 78 35.9
FAN13G1717 Fragaria x ananassa HOM05D000649 ORTHO05D000513 1.2e-08 63.9 77 41.6
Hma1.2p1_0711F.1_g207530 Hydrangea macrophylla HOM05D000649 ORTHO05D014141 1.2e-08 63.9 46 56.5
Eucgr.F01820 Eucalyptus grandis HOM05D000649 ORTHO05D000513 1.6e-08 63.5 76 40.8
FvH4_5g26080 Fragaria vesca HOM05D000649 ORTHO05D000513 1.6e-08 63.5 77 41.6
BcaC07g39059 Brassica carinata HOM05D000649 ORTHO05D000513 2.1e-08 63.2 80 37.5
Os02g0714000 Oryza sativa ssp. japonica HOM05D000649 ORTHO05D000513 2.1e-08 63.2 116 34.5
HPP92_020532 Vanilla planifolia HOM05D000649 ORTHO05D014141 2.7e-08 62.8 68 36.8
BcaB03g14296 Brassica carinata HOM05D000649 ORTHO05D000513 4.6e-08 62.0 83 37.3
C08p20430 Brassica napus HOM05D000649 ORTHO05D000513 6.0e-08 61.6 80 36.2
BolC8t49672H Brassica oleracea HOM05D000649 ORTHO05D000513 6.0e-08 61.6 80 36.2
Lsat_1_v5_gn_3_69020 Lactuca sativa HOM05D000649 ORTHO05D000513 1.0e-07 60.8 86 39.5
SGA_v2.0_scaffold227G43163 Striga asiatica HOM05D000649 ORTHO05D000513 1.0e-07 60.8 92 31.5
BcaB07g32083 Brassica carinata HOM05D000649 ORTHO05D000513 3.0e-07 59.3 53 45.3
PGR119G0463 Punica granatum HOM05D000649 ORTHO05D000513 8.6e-07 57.8 97 39.2
PGSC0003DMG401013639 Solanum tuberosum HOM05D000649 ORTHO05D000513 8.6e-07 57.8 99 38.4
Haze_12233 Corylus avellana HOM05D000740 ORTHO05D003236 1.1e-06 57.4 40 70.0
BcaC06g34844 Brassica carinata HOM05D000649 ORTHO05D000513 1.5e-06 57.0 54 44.4
C07p22740 Brassica napus HOM05D000649 ORTHO05D000513 1.5e-06 57.0 54 44.4
BolC7t42806H Brassica oleracea HOM05D000649 ORTHO05D000513 1.5e-06 57.0 54 44.4
Actinidia03908 Actinidia chinensis HOM05D000649 ORTHO05D053340 2.5e-06 56.2 31 80.6
A07p15430 Brassica napus HOM05D000649 ORTHO05D000513 5.6e-06 55.1 84 34.5
BraA07t29282Z Brassica rapa HOM05D000649 ORTHO05D000513 5.6e-06 55.1 84 34.5
Dinv15246 Davidia involucrata HOM05D000740 ORTHO05D003236 5.6e-06 55.1 38 73.7
Zm00001eb388030 Zea mays HOM05D000649 ORTHO05D000513 5.6e-06 55.1 90 34.4
Solyc02g082270.3 Solanum lycopersicum HOM05D000649 ORTHO05D000513 7.3e-06 54.7 100 38.0


User provided reference genes

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