Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 7.4e-62 240.4 120 100.0
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 2.1e-61 238.8 120 99.2
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 6.2e-61 237.3 120 98.3
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 8.2e-61 236.9 120 98.3
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.1e-60 236.5 120 98.3
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 3.0e-15 85.5 111 49.5
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 2.0e-14 82.8 111 48.6
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 2.0e-14 82.8 111 49.5
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 4.4e-14 81.6 111 52.3
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 4.4e-14 81.6 111 48.6
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 5.7e-14 81.3 111 46.8
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 5.7e-14 81.3 111 48.6
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 7.5e-14 80.9 111 48.6
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 7.5e-14 80.9 118 49.2
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 9.8e-14 80.5 111 47.7
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 9.8e-14 80.5 111 47.7
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 1.3e-13 80.1 111 47.7
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 1.3e-13 80.1 111 48.6
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 1.3e-13 80.1 111 46.8
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 1.3e-13 80.1 111 46.8
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 1.3e-13 80.1 111 49.5
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.7e-13 79.7 114 46.5
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 2.2e-13 79.3 111 47.7
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 2.2e-13 79.3 111 47.7
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 2.2e-13 79.3 111 47.7
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 2.2e-13 79.3 111 45.9
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 2.8e-13 79.0 111 47.7
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 2.8e-13 79.0 111 48.6
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 2.8e-13 79.0 111 50.5
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 2.8e-13 79.0 111 47.7
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 2.8e-13 79.0 111 48.6
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 3.7e-13 78.6 111 49.5
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 3.7e-13 78.6 111 48.6
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 4.8e-13 78.2 111 45.9
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 4.8e-13 78.2 111 46.8
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 4.8e-13 78.2 114 46.5
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 4.8e-13 78.2 111 47.7
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 4.8e-13 78.2 111 49.5
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 4.8e-13 78.2 111 46.8
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 4.8e-13 78.2 110 47.3
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 4.8e-13 78.2 111 45.9
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 6.3e-13 77.8 111 47.7
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 8.3e-13 77.4 111 46.8
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 8.3e-13 77.4 111 46.8
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 8.3e-13 77.4 111 48.6
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 8.3e-13 77.4 111 46.8
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 1.1e-12 77.0 111 46.8
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 1.1e-12 77.0 111 47.7
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 1.1e-12 77.0 111 47.7
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 1.1e-12 77.0 111 47.7
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 1.4e-12 76.6 111 46.8
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 1.4e-12 76.6 111 49.5
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 1.4e-12 76.6 111 47.7
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 1.8e-12 76.3 111 49.5
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 1.8e-12 76.3 111 50.5
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 1.8e-12 76.3 111 47.7
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 2.4e-12 75.9 136 41.9
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 2.4e-12 75.9 111 46.8
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 2.4e-12 75.9 111 46.8
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 3.1e-12 75.5 111 45.0
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 3.1e-12 75.5 111 45.9
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 3.1e-12 75.5 111 46.8
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 4.1e-12 75.1 114 43.9
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 4.1e-12 75.1 111 47.7
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 4.1e-12 75.1 111 47.7
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 4.1e-12 75.1 111 45.9
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 5.4e-12 74.7 114 44.7
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 5.4e-12 74.7 111 46.8
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 5.4e-12 74.7 114 43.9
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 5.4e-12 74.7 111 46.8
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 5.4e-12 74.7 111 45.0
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 5.4e-12 74.7 115 45.2
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 5.4e-12 74.7 114 43.9
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 7.0e-12 74.3 110 46.4
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 7.0e-12 74.3 111 43.2
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 7.0e-12 74.3 114 44.7
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 9.1e-12 73.9 111 44.1
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 1.2e-11 73.6 132 40.9
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 1.2e-11 73.6 111 47.7
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 1.2e-11 73.6 111 47.7
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 1.6e-11 73.2 114 42.1
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 1.6e-11 73.2 111 47.7
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 1.6e-11 73.2 113 45.1
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 1.6e-11 73.2 114 43.0
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.6e-11 73.2 111 47.7
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.6e-11 73.2 111 45.9
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 1.6e-11 73.2 111 45.0
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 2.0e-11 72.8 114 42.1
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 2.0e-11 72.8 114 43.0
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 2.0e-11 72.8 111 45.0
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 2.7e-11 72.4 114 42.1
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 2.7e-11 72.4 114 42.1
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 2.7e-11 72.4 114 42.1
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 2.7e-11 72.4 111 45.0
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 2.7e-11 72.4 111 44.1
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 2.7e-11 72.4 113 46.9
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 2.7e-11 72.4 113 42.5
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.5e-11 72.0 111 44.1
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 3.5e-11 72.0 114 42.1
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 3.5e-11 72.0 114 42.1
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 3.5e-11 72.0 111 44.1
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 4.5e-11 71.6 114 42.1
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 4.5e-11 71.6 111 44.1
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 4.5e-11 71.6 111 44.1
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 5.9e-11 71.2 113 44.2
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 7.7e-11 70.9 111 40.5
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 7.7e-11 70.9 111 45.0
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 1.0e-10 70.5 114 41.2
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 1.0e-10 70.5 114 41.2
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 1.0e-10 70.5 114 41.2
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 1.0e-10 70.5 114 41.2
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 1.0e-10 70.5 114 41.2
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 1.0e-10 70.5 111 44.1
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 1.3e-10 70.1 142 40.1
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 1.7e-10 69.7 114 41.2
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 1.7e-10 69.7 111 43.2
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.3e-10 69.3 111 41.4
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 2.3e-10 69.3 116 46.6
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 2.3e-10 69.3 111 43.2
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 2.3e-10 69.3 111 45.9
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 2.9e-10 68.9 113 42.5
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 2.9e-10 68.9 157 35.7
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 2.9e-10 68.9 115 41.7
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 2.9e-10 68.9 111 44.1
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 2.9e-10 68.9 111 45.0
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 1.9e-09 66.2 111 42.3
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.3e-09 65.5 110 42.7
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 3.3e-09 65.5 111 42.3
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 4.7e-08 61.6 111 42.3
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 4.7e-08 61.6 111 36.0
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 1.4e-07 60.1 36 86.1
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 1.8e-07 59.7 36 83.3
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 1.8e-07 59.7 111 36.0
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 3.0e-07 58.9 114 36.8
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 5.2e-07 58.2 37 81.1
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 6.8e-07 57.8 36 83.3
Glyma.07G158050 Glycine max HOM05D004325 ORTHO05D022134 6.8e-07 57.8 45 64.4
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.2e-06 57.0 36 83.3
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 1.5e-06 56.6 111 41.4
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.5e-06 56.6 38 76.3
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 7.5e-06 54.3 36 77.8


User provided reference genes

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