Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004478 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 9.0e-218 760.0 390 100.0
CSS0037074 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 1.0e-208 729.9 380 98.4
Actinidia03963 Actinidia chinensis HOM05D003892 ORTHO05D004522 2.1e-150 536.2 403 73.2
Dinv25081 Davidia involucrata HOM05D003892 ORTHO05D004522 1.0e-144 517.3 383 73.9
Hma1.2p1_0304F.1_g119340 Hydrangea macrophylla HOM05D003892 ORTHO05D004522 7.6e-132 474.6 382 68.1
Rhsim03G0058500 Rhododendron simsii HOM05D003892 ORTHO05D004522 1.1e-130 470.7 383 69.2
Lj1C1061G1 Lonicera japonica HOM05D003892 ORTHO05D004522 1.2e-121 440.7 386 64.2
GSVIVG01015854001 Vitis vinifera HOM05D003892 ORTHO05D004522 2.5e-119 433.0 381 63.3
TAR633G1336 Trochodendron aralioides HOM05D003892 ORTHO05D004522 2.4e-117 426.4 385 62.9
Dinv11899 Davidia involucrata HOM05D003892 ORTHO05D004522 5.8e-116 421.8 324 69.8
QL07p026283 Quercus lobata HOM05D003892 ORTHO05D004522 7.6e-108 394.8 384 58.9
Cfa017615 Carpinus fangiana HOM05D003892 ORTHO05D004522 2.2e-107 393.3 385 58.4
Solyc01g006700.3 Solanum lycopersicum HOM05D003892 ORTHO05D004522 8.4e-107 391.3 385 55.8
PGSC0003DMG400021344 Solanum tuberosum HOM05D003892 ORTHO05D004522 2.4e-106 389.8 374 57.5
CiPaw.10G021500 Carya illinoinensis HOM05D003892 ORTHO05D004522 2.7e-105 386.3 384 58.6
Thecc.05G110400 Theobroma cacao HOM05D003892 ORTHO05D004522 2.7e-105 386.3 383 57.4
Ciclev10011278m.g Citrus clementina HOM05D003892 ORTHO05D004522 7.9e-105 384.8 381 60.1
Nitab4.5_0003430g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.1e-103 380.9 376 57.4
Duzib106G1451 Durio zibethinus HOM05D003892 ORTHO05D004522 4.3e-103 379.0 383 56.1
Sopen01g002690 Solanum pennellii HOM05D003892 ORTHO05D004522 1.3e-102 377.5 388 54.4
COL.COLO4_29492 Corchorus olitorius HOM05D003892 ORTHO05D004522 3.7e-102 375.9 383 56.4
Manes.08G037500 Manihot esculenta HOM05D003892 ORTHO05D004522 6.2e-102 375.2 385 57.7
Potri.016G065600 Populus trichocarpa HOM05D003892 ORTHO05D004522 1.1e-101 374.4 385 58.2
DCAR_013462 Daucus carota HOM05D003892 ORTHO05D004522 6.9e-101 371.7 387 55.8
CAN.G388.52 Capsicum annuum HOM05D003892 ORTHO05D004522 7.6e-100 368.2 393 53.9
Peaxi162Scf00751g00063 Petunia axillaris HOM05D003892 ORTHO05D004522 8.4e-99 364.8 390 53.6
Haze_20130 Corylus avellana HOM05D003892 ORTHO05D004522 1.9e-98 363.6 383 56.4
Gohir.D04G093300 Gossypium hirsutum HOM05D003892 ORTHO05D004522 2.5e-98 363.2 382 55.0
Duzib128G1914 Durio zibethinus HOM05D003892 ORTHO05D004522 3.2e-98 362.8 378 54.8
Peaxi162Scf00210g00093 Petunia axillaris HOM05D003892 ORTHO05D004522 5.5e-98 362.1 390 53.3
GSVIVG01020969001 Vitis vinifera HOM05D003892 ORTHO05D004522 5.5e-98 362.1 344 59.3
Oeu058130.1 Olea europaea HOM05D003892 ORTHO05D004522 9.3e-98 361.3 434 50.7
Atru.chr8.1281 Acer truncatum HOM05D003892 ORTHO05D004522 2.1e-97 360.1 396 54.0
Gohir.D01G189600 Gossypium hirsutum HOM05D003892 ORTHO05D004522 6.0e-97 358.6 380 53.4
Gorai.002G233300 Gossypium raimondii HOM05D003892 ORTHO05D004522 7.9e-97 358.2 380 53.7
Gohir.A01G199500 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.3e-96 357.5 375 54.1
Gorai.009G395500 Gossypium raimondii HOM05D003892 ORTHO05D004522 2.3e-96 356.7 382 54.2
TWI15G0645 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 6.7e-96 355.1 385 55.1
Cc06_g06980 Coffea canephora HOM05D003892 ORTHO05D004522 1.5e-95 354.0 386 54.7
Prupe.7G089700 Prunus persica HOM05D003892 ORTHO05D004522 3.3e-95 352.8 385 55.3
HanXRQChr13g0398781 Helianthus annuus HOM05D003892 ORTHO05D004522 4.8e-94 349.0 393 52.2
HanXRQChr02g0052851 Helianthus annuus HOM05D003892 ORTHO05D004522 1.4e-93 347.4 389 52.7
TWI81G0594 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 3.1e-93 346.3 385 54.5
Potri.006G199200 Populus trichocarpa HOM05D003892 ORTHO05D004522 7.6e-92 341.7 389 54.8
MD14G1044900 Malus domestica HOM05D003892 ORTHO05D004522 5.0e-91 339.0 371 54.2
Nn2g14423 Nelumbo nucifera HOM05D003892 ORTHO05D004522 7.2e-90 335.1 389 52.4
CANSAT64G1569 Cannabis sativa HOM05D003892 ORTHO05D004522 1.3e-88 330.9 382 52.1
Eucgr.A02543 Eucalyptus grandis HOM05D003892 ORTHO05D004522 6.7e-88 328.6 397 49.1
MSTRG.5909 Avicennia marina HOM05D003892 ORTHO05D004522 4.3e-87 325.9 385 53.2
ECA233G3816 Erigeron canadensis HOM05D003892 ORTHO05D004522 1.4e-85 320.9 394 49.0
MD12G1046200 Malus domestica HOM05D003892 ORTHO05D004522 1.8e-85 320.5 371 52.3
vmacro07512 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 1.2e-84 317.8 256 70.7
ClCG10G017850 Citrullus lanatus HOM05D003892 ORTHO05D004522 7.7e-84 315.1 383 49.6
FAN05G2923 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.0e-83 314.7 380 51.3
PGR004G2391 Punica granatum HOM05D003892 ORTHO05D004522 1.3e-83 314.3 387 50.4
RcHm_v2.0_Chr3g0477411 Rosa chinensis HOM05D003892 ORTHO05D004522 1.7e-83 313.9 383 51.7
Lsat_1_v5_gn_6_34240 Lactuca sativa HOM05D003892 ORTHO05D004522 5.0e-83 312.4 391 48.3
Migut.J00728 Erythranthe guttata HOM05D003892 ORTHO05D004522 1.4e-82 310.8 382 52.1
Aqoxy2G02397 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 4.2e-82 309.3 390 49.0
Sc22g0003030 Simmondsia chinensis HOM05D003892 ORTHO05D004522 1.2e-81 307.8 370 50.0
Aqoxy1G00583 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 1.6e-81 307.4 389 49.6
Sabra16G0067100 Salix brachista HOM05D003892 ORTHO05D004522 3.6e-81 306.2 385 50.9
arahy.Tifrunner.gnm1.ann1.P5VIE6 Arachis hypogaea HOM05D003892 ORTHO05D004522 1.4e-80 304.3 386 48.7
EL10Ac5g11803 Beta vulgaris HOM05D003892 ORTHO05D004522 1.4e-80 304.3 380 50.3
AUR62038416 Chenopodium quinoa HOM05D003892 ORTHO05D004522 2.3e-80 303.5 387 48.8
FAN02G1525 Fragaria x ananassa HOM05D003892 ORTHO05D004522 2.3e-80 303.5 380 50.3
MELO3C009588.2 Cucumis melo HOM05D003892 ORTHO05D004522 8.8e-80 301.6 385 47.5
PSO210G1032 Papaver somniferum HOM05D003892 ORTHO05D004522 1.1e-79 301.2 383 48.8
AUR62036307 Chenopodium quinoa HOM05D003892 ORTHO05D004522 2.0e-79 300.4 387 48.3
Lj1g0007585 Lotus japonicus HOM05D003892 ORTHO05D004522 5.7e-79 298.9 386 47.4
FvH4_6g21040 Fragaria vesca HOM05D003892 ORTHO05D004522 9.7e-79 298.1 380 50.0
Hund10790 Selenicereus undatus HOM05D003892 ORTHO05D004522 1.7e-78 297.4 380 47.9
arahy.Tifrunner.gnm1.ann1.H4389H Arachis hypogaea HOM05D003892 ORTHO05D004522 4.8e-78 295.8 416 45.7
Sed0022353 Sechium edule HOM05D003892 ORTHO05D004522 6.3e-78 295.4 382 46.9
Lalb_Chr01g0017711 Lupinus albus HOM05D003892 ORTHO05D004522 8.2e-78 295.0 400 46.5
CsaV3_3G038440 Cucumis sativus L. HOM05D003892 ORTHO05D004522 2.4e-77 293.5 385 47.5
Sp5g07700 Schrenkiella parvula HOM05D003892 ORTHO05D004522 5.3e-77 292.4 387 49.4
SalBow1G1519 Salvia bowleyana HOM05D003892 ORTHO05D004522 9.1e-77 291.6 387 49.9
THA.LOC104825242 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 9.1e-77 291.6 382 46.3
FAN05G3327 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.2e-76 291.2 411 47.0
Aa31LG11G3840 Aethionema arabicum HOM05D003892 ORTHO05D004522 1.5e-76 290.8 386 48.4
PSO832G2838 Papaver somniferum HOM05D003892 ORTHO05D004522 1.5e-76 290.8 383 47.5
THA.LOC104824220 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 2.0e-76 290.4 384 47.9
SalBow1G7123 Salvia bowleyana HOM05D003892 ORTHO05D004522 2.6e-76 290.0 387 49.6
Lalb_Chr25g0287841 Lupinus albus HOM05D003892 ORTHO05D004522 5.0e-75 285.8 393 45.3
FAN14G4612 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.9e-74 283.9 411 46.5
arahy.Tifrunner.gnm1.ann1.L9LT45 Arachis hypogaea HOM05D003892 ORTHO05D004522 9.4e-74 281.6 370 47.8
SGA_v2.0_scaffold31G12827 Striga asiatica HOM05D003892 ORTHO05D004522 1.6e-73 280.8 388 48.2
Sed0005279 Sechium edule HOM05D000521 ORTHO05D004522 2.1e-73 280.4 383 46.2
Ca_09081_v3 Cicer arietinum L. HOM05D003892 ORTHO05D004522 4.7e-73 279.3 385 46.2
Glyma.19G202400 Glycine max HOM05D003892 ORTHO05D004522 7.9e-73 278.5 384 45.8
Thhalv10010226m.g Eutrema salsugineum HOM05D003892 ORTHO05D004522 1.4e-72 277.7 347 49.6
Carub.0005s2135 Capsella rubella HOM05D003892 ORTHO05D004522 3.0e-72 276.6 381 47.5
Glyma.03G205000 Glycine max HOM05D003892 ORTHO05D004522 3.9e-72 276.2 384 46.9
Medtr7g106900 Medicago truncatula HOM05D003892 ORTHO05D004522 3.9e-72 276.2 385 44.9
arahy.Tifrunner.gnm1.ann1.IGZ3F9 Arachis hypogaea HOM05D003892 ORTHO05D004522 8.8e-72 275.0 370 46.5
CARHR164690 Cardamine hirsuta HOM05D003892 ORTHO05D004522 1.5e-71 274.2 387 45.5
AL5G35820 Arabidopsis lyrata HOM05D003892 ORTHO05D004522 2.0e-71 273.9 365 47.1
MBI11_g43834_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 3.3e-71 273.1 392 47.7
Sabra06G0153100 Salix brachista HOM05D003892 ORTHO05D004522 4.4e-71 272.7 385 48.3
Gohir.D07G211433 Gossypium hirsutum HOM05D003892 ORTHO05D004522 7.4e-71 271.9 403 43.9
SGA_v2.0_scaffold112G31566 Striga asiatica HOM05D003892 ORTHO05D004522 7.4e-71 271.9 387 47.3
BraA09t40224Z Brassica rapa HOM05D003892 ORTHO05D004522 4.8e-70 269.2 378 45.8
A09p47680 Brassica napus HOM05D003892 ORTHO05D004522 8.2e-70 268.5 380 45.8
Phvul.001G198500 Phaseolus vulgaris HOM05D003892 ORTHO05D004522 1.1e-69 268.1 382 45.8
Psat3g027080 Pisum sativum HOM05D003892 ORTHO05D004522 1.8e-69 267.3 386 44.3
BcaB01g00163 Brassica carinata HOM05D003892 ORTHO05D004522 3.1e-69 266.5 401 45.6
AT3G54750 Arabidopsis thaliana HOM05D003892 ORTHO05D004522 4.5e-68 262.7 355 47.0
Ah.12g059580 Amaranthus hybridus HOM05D003892 ORTHO05D004522 7.7e-68 261.9 385 44.7
Actinidia37778 Actinidia chinensis HOM05D003892 ORTHO05D004522 6.5e-67 258.8 253 61.7
Nitab4.5_0000429g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.5e-66 257.7 297 49.2
Lj6g0017825 Lotus japonicus HOM05D003892 ORTHO05D004522 1.9e-66 257.3 359 44.8
TPR.G34451 Trifolium pratense HOM05D003892 ORTHO05D004522 9.4e-66 255.0 379 43.5
BolC8t50600H Brassica oleracea HOM05D003892 ORTHO05D004522 1.6e-65 254.2 378 46.8
BcaC07g39789 Brassica carinata HOM05D003892 ORTHO05D004522 2.1e-65 253.8 376 45.7
BcaB02g08458 Brassica carinata HOM05D003892 ORTHO05D004522 1.0e-64 251.5 374 45.7
Nitab4.5_0000300g0030 Nicotiana tabacum HOM05D003892 ORTHO05D004522 3.0e-64 250.0 375 44.5
C08p29890 Brassica napus HOM05D003892 ORTHO05D004522 4.0e-64 249.6 376 45.2
CDE07G1113 Ceratophyllum demersum HOM05D003892 ORTHO05D004522 1.5e-63 247.7 385 43.9
HPP92_013933 Vanilla planifolia HOM05D003892 ORTHO05D004522 1.5e-63 247.7 391 42.5
A04p05070 Brassica napus HOM05D003892 ORTHO05D004522 2.6e-63 246.9 346 46.0
BraA04t16218Z Brassica rapa HOM05D003892 ORTHO05D004522 2.6e-63 246.9 346 46.2
Lsat_1_v5_gn_2_121661 Lactuca sativa HOM05D003892 ORTHO05D004522 2.6e-63 246.9 356 46.6
MBI11_g33439_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 5.7e-63 245.7 234 57.7
VMungo1383G0340 Vigna mungo HOM05D003892 ORTHO05D004522 4.8e-62 242.7 382 42.9
Gohir.A04G055921 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.8e-61 240.7 264 54.9
C04p37570 Brassica napus HOM05D003892 ORTHO05D004522 8.5e-59 231.9 346 44.8
BcaC02g09701 Brassica carinata HOM05D003892 ORTHO05D004522 1.1e-58 231.5 346 44.8
ECA238G3852 Erigeron canadensis HOM05D003892 ORTHO05D004522 4.7e-57 226.1 353 42.2
ATR0580G241 Amborella trichopoda HOM05D003892 ORTHO05D004522 6.8e-56 222.2 357 42.0
Zm00001eb032200 Zea mays HOM05D003892 ORTHO05D004522 5.0e-51 206.1 378 41.0
arahy.Tifrunner.gnm1.ann1.75SLRD Arachis hypogaea HOM05D003892 ORTHO05D004522 1.2e-47 194.9 195 55.4
Nitab4.5_0003430g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 5.7e-47 192.6 220 48.6
Os12g0621700 Oryza sativa ssp. japonica HOM05D003892 ORTHO05D004522 5.7e-47 192.6 376 38.3
Cpa.g.sc222.13 Carica papaya HOM05D003892 ORTHO05D004522 2.4e-45 187.2 241 49.8
Aa31LG2G20030 Aethionema arabicum HOM05D003892 ORTHO05D004522 1.6e-44 184.5 295 43.4
TAR636G1189 Trochodendron aralioides HOM05D003892 ORTHO05D004522 2.7e-44 183.7 207 55.6
TAR636G2427 Trochodendron aralioides HOM05D003892 ORTHO05D004522 6.6e-43 179.1 137 66.4
Aqoxy2G02169 Aquilegia oxysepala HOM05D001785 ORTHO05D001933 3.6e-41 173.3 262 45.0
Sed0022528 Sechium edule HOM05D003892 ORTHO05D004522 3.6e-41 173.3 387 37.5
arahy.Tifrunner.gnm1.ann1.84GXZP Arachis hypogaea HOM05D003892 ORTHO05D004522 3.0e-40 170.2 280 41.4
arahy.Tifrunner.gnm1.ann1.C1NY7P Arachis hypogaea HOM05D003892 ORTHO05D004522 1.2e-39 168.3 275 41.8
arahy.Tifrunner.gnm1.ann1.R2HNIM Arachis hypogaea HOM05D003892 ORTHO05D004522 8.3e-38 162.2 285 39.3
Medtr7g029625 Medicago truncatula HOM05D003892 ORTHO05D004522 7.5e-31 139.0 359 32.0
arahy.Tifrunner.gnm1.ann1.Z2YKN3 Arachis hypogaea HOM05D003892 ORTHO05D004522 1.9e-26 124.4 178 44.4
Pp3c26_8020 Physcomitrium patens HOM05D003892 ORTHO05D004522 2.5e-26 124.0 401 29.7
arahy.Tifrunner.gnm1.ann1.U7JCXR Arachis hypogaea HOM05D003892 ORTHO05D004522 3.3e-26 123.6 186 43.5
SMO351G0585 Selaginella moellendorffii HOM05D003892 ORTHO05D004522 1.2e-23 115.2 387 29.2
SHI28320 Sapria himalayana HOM05D003892 ORTHO05D004522 5.8e-23 112.8 295 28.5
HPP92_012152 Vanilla planifolia HOM05D003892 ORTHO05D004522 3.2e-21 107.1 90 55.6
SEGI_25684 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 9.2e-21 105.5 247 35.6
vmacro07513 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 3.0e-19 100.5 128 50.8
AagrBONN_evm.TU.Sc2ySwM_228.3493 Anthoceros agrestis HOM05D003892 ORTHO05D004522 3.9e-19 100.1 155 40.6
Mapoly0011s0047 Marchantia polymorpha HOM05D003892 ORTHO05D004522 2.5e-18 97.4 380 27.1
arahy.Tifrunner.gnm1.ann1.RB1WVK Arachis hypogaea HOM05D003892 ORTHO05D004522 4.0e-16 90.1 154 42.2
Pp3c4_31220 Physcomitrium patens HOM05D003892 ORTHO05D004522 3.4e-15 87.0 313 29.1
Actinidia37779 Actinidia chinensis HOM05D003892 ORTHO05D004522 1.3e-14 85.1 49 77.6
Gohir.A04G055942 Gossypium hirsutum HOM05D003892 ORTHO05D004522 5.4e-13 79.7 59 61.0
Nitab4.5_0000123g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 7.8e-12 75.9 106 49.1
SEGI_30208 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 1.1e-10 72.0 57 57.9
ATR1154G039 Amborella trichopoda HOM05D003892 ORTHO05D004522 1.2e-07 62.0 127 35.4
vmacro03875 Vaccinium macrocarpon HOM05D004616 ORTHO05D005860 1.2e-07 62.0 105 39.0
CBR_g20103 Chara braunii HOM05D003892 ORTHO05D004522 3.8e-06 57.0 178 27.5


User provided reference genes

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