Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004473 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D008663 1.6e-100 369.4 177 100.0
CSS0019679 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D008663 1.9e-98 362.5 177 97.7
CSS0043152 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D008663 1.2e-79 300.1 177 84.2
CSS0030841 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D008663 3.5e-52 208.8 183 61.2
CSS0021561 Camellia sinensis var. sinensis HOM05D001090 ORTHO05D008663 6.8e-48 194.5 162 66.0
Rhsim11G0070600 Rhododendron simsii HOM05D001090 ORTHO05D008663 2.8e-41 172.6 164 57.3
Actinidia29485 Actinidia chinensis HOM05D001090 ORTHO05D008663 4.8e-41 171.8 162 57.4
Actinidia03422 Actinidia chinensis HOM05D001090 ORTHO05D008663 3.1e-40 169.1 162 58.6
DCAR_018875 Daucus carota HOM05D001090 ORTHO05D008663 2.0e-39 166.4 162 53.1
Peaxi162Scf01003g00015 Petunia axillaris HOM05D001090 ORTHO05D008663 2.9e-38 162.5 165 52.7
Nitab4.5_0002045g0020 Nicotiana tabacum HOM05D001090 ORTHO05D008663 3.2e-37 159.1 162 54.3
Dinv14668 Davidia involucrata HOM05D001090 ORTHO05D008663 5.4e-37 158.3 162 53.7
CiPaw.15G032400 Carya illinoinensis HOM05D001090 ORTHO05D008663 7.3e-34 147.9 162 51.2
Hma1.2p1_1129F.1_g259860 Hydrangea macrophylla HOM05D001090 ORTHO05D008663 1.2e-31 140.6 162 49.4
Nn1g08979 Nelumbo nucifera HOM05D001090 ORTHO05D008663 2.6e-31 139.4 141 51.8
QL09p032725 Quercus lobata HOM05D001090 ORTHO05D008663 4.5e-31 138.7 162 49.4
Nitab4.5_0001168g0020 Nicotiana tabacum HOM05D001090 ORTHO05D008663 5.8e-31 138.3 150 51.3
SGA_v2.0_scaffold24G10429 Striga asiatica HOM05D001090 ORTHO05D008663 7.6e-31 137.9 143 53.1
Lj7C349G17 Lonicera japonica HOM05D001090 ORTHO05D002687 9.9e-31 137.5 164 49.4
Cc10_g12630 Coffea canephora HOM05D001090 ORTHO05D008663 4.9e-30 135.2 141 49.6
GSVIVG01008814001 Vitis vinifera HOM05D001090 ORTHO05D008663 4.9e-30 135.2 162 47.5
Cfa018121 Carpinus fangiana HOM05D001090 ORTHO05D008663 8.4e-30 134.4 162 46.9
Aqoxy6G00325 Aquilegia oxysepala HOM05D001090 ORTHO05D008663 4.2e-29 132.1 141 46.1
MBI03_g28477_MAGBIO Magnolia biondii HOM05D001090 ORTHO05D008663 9.3e-29 131.0 162 44.4
Prupe.1G490500 Prunus persica HOM05D001090 ORTHO05D008663 1.3e-27 127.1 141 48.9
Glyma.06G116800 Glycine max HOM05D001090 ORTHO05D008663 3.9e-27 125.6 144 45.1
RcHm_v2.0_Chr6g0296591 Rosa chinensis HOM05D001090 ORTHO05D008663 5.1e-27 125.2 141 45.4
Thecc.08G132300 Theobroma cacao HOM05D001090 ORTHO05D008663 5.1e-27 125.2 141 49.6
TWI34G0871 Tripterygium wilfordii HOM05D001090 ORTHO05D008663 5.1e-27 125.2 162 43.8
Sc15g0007530 Simmondsia chinensis HOM05D001090 ORTHO05D008663 6.7e-27 124.8 142 46.5
Lj1g0016545 Lotus japonicus HOM05D001090 ORTHO05D008663 8.7e-27 124.4 141 46.1
Oeu021884.2 Olea europaea HOM05D001090 ORTHO05D008663 1.1e-26 124.0 135 47.4
FvH4_2g27740 Fragaria vesca HOM05D001090 ORTHO05D008663 1.5e-26 123.6 141 46.1
Atru.chr13.1551 Acer truncatum HOM05D001090 ORTHO05D008663 2.5e-26 122.9 164 44.5
FAN20G0562 Fragaria x ananassa HOM05D001090 ORTHO05D002687 1.3e-25 120.6 141 46.1
CANSAT56G3793 Cannabis sativa HOM05D001090 ORTHO05D008663 2.1e-25 119.8 189 39.2
Ca_16604_v3 Cicer arietinum L. HOM05D001090 ORTHO05D002687 2.8e-25 119.4 141 44.0
Migut.C01061 Erythranthe guttata HOM05D001090 ORTHO05D008663 3.7e-25 119.0 162 42.0
Phvul.009G129300 Phaseolus vulgaris HOM05D001090 ORTHO05D008663 3.7e-25 119.0 144 44.4
arahy.Tifrunner.gnm1.ann1.NR7S6L Arachis hypogaea HOM05D001090 ORTHO05D008663 6.2e-25 118.2 141 43.3
FAN24G1236 Fragaria x ananassa HOM05D001090 ORTHO05D002687 8.1e-25 117.9 141 44.7
VMungo1309G2387 Vigna mungo HOM05D001090 ORTHO05D008663 8.1e-25 117.9 141 44.0
EL10Ac7g17319 Beta vulgaris HOM05D001090 ORTHO05D008663 1.8e-24 116.7 141 44.0
PSO017G6856 Papaver somniferum HOM05D001090 ORTHO05D008663 1.8e-24 116.7 141 44.0
Medtr3g088545 Medicago truncatula HOM05D001090 ORTHO05D008663 2.4e-24 116.3 141 43.3
FAN15G0022 Fragaria x ananassa HOM05D001090 ORTHO05D002687 3.1e-24 115.9 141 45.4
FAN27G1391 Fragaria x ananassa HOM05D001090 ORTHO05D002687 3.1e-24 115.9 141 45.4
TPR.G13463 Trifolium pratense HOM05D001090 ORTHO05D008663 3.1e-24 115.9 141 41.8
MSTRG.25363 Avicennia marina HOM05D001090 ORTHO05D008663 5.3e-24 115.2 162 41.4
Hund17320 Selenicereus undatus HOM05D001090 ORTHO05D008663 5.3e-24 115.2 141 43.3
Lalb_Chr08g0241151 Lupinus albus HOM05D001090 ORTHO05D008663 6.9e-24 114.8 142 44.4
PGSC0003DMG401006052 Solanum tuberosum HOM05D001090 ORTHO05D008663 9.0e-24 114.4 162 43.2
arahy.Tifrunner.gnm1.ann1.FIZF7Q Arachis hypogaea HOM05D001090 ORTHO05D008663 1.2e-23 114.0 141 41.8
COL.COLO4_05689 Corchorus olitorius HOM05D001090 ORTHO05D008663 1.2e-23 114.0 154 43.5
HanXRQChr02g0041931 Helianthus annuus HOM05D001090 ORTHO05D008663 1.2e-23 114.0 164 45.1
Psat5g085040 Pisum sativum HOM05D001090 ORTHO05D008663 1.2e-23 114.0 141 41.8
Sopen11g001050 Solanum pennellii HOM05D001090 ORTHO05D008663 2.0e-23 113.2 162 44.4
Solyc11g005030.3 Solanum lycopersicum HOM05D001090 ORTHO05D008663 2.6e-23 112.8 162 43.8
AUR62040524 Chenopodium quinoa HOM05D001090 ORTHO05D008663 3.4e-23 112.5 149 39.6
Duzib041G0130 Durio zibethinus HOM05D001090 ORTHO05D008663 5.8e-23 111.7 163 42.3
Gorai.005G088100 Gossypium raimondii HOM05D001090 ORTHO05D008663 5.8e-23 111.7 164 40.9
Potri.019G066500 Populus trichocarpa HOM05D001090 ORTHO05D008663 7.6e-23 111.3 162 42.6
Ciclev10000294m.g Citrus clementina HOM05D001090 ORTHO05D008663 1.0e-22 110.9 162 41.4
Eucgr.F03832 Eucalyptus grandis HOM05D001090 ORTHO05D008663 1.0e-22 110.9 85 61.2
Manes.18G082000 Manihot esculenta HOM05D001090 ORTHO05D008663 1.3e-22 110.5 130 49.2
Ah.15g092020 Amaranthus hybridus HOM05D001090 ORTHO05D008663 1.7e-22 110.2 141 42.6
PSO170G6226 Papaver somniferum HOM05D001090 ORTHO05D008663 6.5e-22 108.2 142 42.3
vmacro16445 Vaccinium macrocarpon HOM05D001090 ORTHO05D008663 1.4e-21 107.1 270 33.0
SalBow7G3344 Salvia bowleyana HOM05D001090 ORTHO05D008663 1.9e-21 106.7 162 38.9
SalBow7G3826 Salvia bowleyana HOM05D001090 ORTHO05D008663 1.9e-21 106.7 162 38.9
TWI32G0149 Tripterygium wilfordii HOM05D001090 ORTHO05D002687 1.9e-21 106.7 163 40.5
AL1G34800 Arabidopsis lyrata HOM05D001090 ORTHO05D008663 4.2e-21 105.5 141 44.0
Carub.0001s2108 Capsella rubella HOM05D001090 ORTHO05D008663 5.5e-21 105.1 141 44.0
CARHR022000 Cardamine hirsuta HOM05D001090 ORTHO05D002687 2.1e-20 103.2 141 43.3
Sabra19G0078400 Salix brachista HOM05D001090 ORTHO05D008663 2.7e-20 102.8 162 41.4
ECA238G2411 Erigeron canadensis HOM05D001090 ORTHO05D008663 3.5e-20 102.4 166 41.0
Lsat_1_v5_gn_1_9840 Lactuca sativa HOM05D001090 ORTHO05D008663 3.5e-20 102.4 165 40.6
AT1G21650 Arabidopsis thaliana HOM05D001090 ORTHO05D002687 4.6e-20 102.1 141 42.6
AT1G21651 Arabidopsis thaliana HOM05D001090 ORTHO05D008663 4.6e-20 102.1 141 42.6
Sp1g19180 Schrenkiella parvula HOM05D001090 ORTHO05D008663 1.0e-19 100.9 141 43.3
unitig_0.g2283 Utricularia gibba HOM05D001090 ORTHO05D008663 2.3e-19 99.8 144 38.9
Thhalv10006535m.g Eutrema salsugineum HOM05D001090 ORTHO05D002687 1.1e-18 97.4 141 41.1
A06p17720 Brassica napus HOM05D001090 ORTHO05D008663 2.5e-18 96.3 162 37.7
BraA06t24864Z Brassica rapa HOM05D001090 ORTHO05D008663 2.5e-18 96.3 162 37.7
CDE02G2378 Ceratophyllum demersum HOM05D001090 ORTHO05D008663 2.5e-18 96.3 168 32.7
SHI09187 Sapria himalayana HOM05D001090 ORTHO05D008663 1.6e-17 93.6 166 34.9
BcaC05g26082 Brassica carinata HOM05D001090 ORTHO05D008663 2.1e-17 93.2 141 39.7
ATR0584G005 Amborella trichopoda HOM05D001090 ORTHO05D008663 2.8e-17 92.8 141 36.2
Aa31LG7G5630 Aethionema arabicum HOM05D001090 ORTHO05D008663 3.7e-17 92.4 141 41.1
Gohir.D02G078900 Gossypium hirsutum HOM05D001090 ORTHO05D008663 3.7e-17 92.4 105 46.7
C05p20620 Brassica napus HOM05D001090 ORTHO05D008663 6.2e-17 91.7 141 38.3
BolC5t30760H Brassica oleracea HOM05D001090 ORTHO05D008663 6.2e-17 91.7 141 38.3
CsaV3_1G032930 Cucumis sativus L. HOM05D001090 ORTHO05D008663 6.2e-17 91.7 162 36.4
THA.LOC104813679 Tarenaya hassleriana HOM05D001090 ORTHO05D008663 2.4e-16 89.7 141 36.9
MELO3C002690.2 Cucumis melo HOM05D001090 ORTHO05D008663 3.1e-16 89.4 162 35.8
Lj7A347T47 Lonicera japonica HOM05D001090 ORTHO05D008663 1.2e-15 87.4 80 55.0
BcaB07g32158 Brassica carinata HOM05D001090 ORTHO05D008663 1.5e-15 87.0 141 37.6
Gohir.A02G071600 Gossypium hirsutum HOM05D001090 ORTHO05D008663 2.0e-15 86.7 105 44.8
CDE08G1173 Ceratophyllum demersum HOM05D001090 ORTHO05D008663 2.9e-14 82.8 62 58.1
Cpa.g.sc64.146 Carica papaya HOM05D001090 ORTHO05D008663 8.7e-11 71.2 174 30.5
HPP92_013748 Vanilla planifolia HOM05D001090 ORTHO05D008663 5.3e-08 62.0 141 27.7


User provided reference genes

Program Settings