Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004470 Camellia sinensis var. sinensis HOM05D046308 ORTHO05D001879 5.6e-71 270.8 133 100.0
CSS0022467 Camellia sinensis var. sinensis HOM05D046308 ORTHO05D001879 6.2e-70 267.3 133 98.5
Actinidia32823 Actinidia chinensis HOM05D001964 ORTHO05D001879 1.8e-24 116.3 83 71.1
Actinidia16442 Actinidia chinensis HOM05D001964 ORTHO05D001879 2.6e-23 112.5 76 71.1
Actinidia21235 Actinidia chinensis HOM05D001964 ORTHO05D001879 1.7e-22 109.8 76 69.7
Dinv30067 Davidia involucrata HOM05D001964 ORTHO05D001879 1.0e-19 100.5 94 55.3
Hma1.2p1_1377F.1_g279100 Hydrangea macrophylla HOM05D001964 ORTHO05D001879 1.0e-16 90.5 82 54.9
Rhsim08G0095400 Rhododendron simsii HOM05D001964 ORTHO05D001879 1.8e-13 79.7 72 61.1
vmacro17990 Vaccinium macrocarpon HOM05D001964 ORTHO05D001879 5.4e-13 78.2 72 58.3
Cfa004099 Carpinus fangiana HOM05D001964 ORTHO05D001879 5.9e-12 74.7 55 63.6
TWI09G0477 Tripterygium wilfordii HOM05D001964 ORTHO05D001879 1.7e-11 73.2 61 54.1
Thecc.01G068800 Theobroma cacao HOM05D001964 ORTHO05D001879 2.9e-11 72.4 71 49.3
Hma1.2p1_0923F.1_g236960 Hydrangea macrophylla HOM05D001964 ORTHO05D001879 5.0e-11 71.6 69 47.8
Haze_15312 Corylus avellana HOM05D001964 ORTHO05D001879 1.9e-10 69.7 76 48.7
Dinv44975 Davidia involucrata HOM05D001964 ORTHO05D001879 1.9e-10 69.7 82 48.8
Atru.chr3.197 Acer truncatum HOM05D001964 ORTHO05D001879 3.3e-10 68.9 79 44.3
Dinv39242 Davidia involucrata HOM05D001964 ORTHO05D001879 9.5e-10 67.4 75 46.7
Atru.chr3.168 Acer truncatum HOM05D001964 ORTHO05D001879 1.2e-09 67.0 79 44.3
Nn5g30517 Nelumbo nucifera HOM05D001964 ORTHO05D001879 1.2e-09 67.0 69 49.3
Duzib147G0427 Durio zibethinus HOM05D001964 ORTHO05D001879 2.8e-09 65.9 59 50.8
Duzib187G0914 Durio zibethinus HOM05D001964 ORTHO05D001879 3.6e-09 65.5 80 45.0
Gohir.A12G074800 Gossypium hirsutum HOM05D001964 ORTHO05D001879 3.6e-09 65.5 57 50.9
RcHm_v2.0_Chr2g0107421 Rosa chinensis HOM05D001964 ORTHO05D001879 3.6e-09 65.5 75 50.7
TAR628G0349 Trochodendron aralioides HOM05D001964 ORTHO05D001879 3.6e-09 65.5 81 44.4
GSVIVG01009369001 Vitis vinifera HOM05D001964 ORTHO05D001879 3.6e-09 65.5 72 47.2
Prupe.6G224100 Prunus persica HOM05D001964 ORTHO05D001879 4.7e-09 65.1 76 46.1
Gorai.008G080300 Gossypium raimondii HOM05D001964 ORTHO05D001879 6.1e-09 64.7 47 59.6
Gohir.D12G073000 Gossypium hirsutum HOM05D001964 ORTHO05D001879 8.0e-09 64.3 47 59.6
TAR376G1152 Trochodendron aralioides HOM05D001964 ORTHO05D001879 1.4e-08 63.5 76 47.4
Manes.13G113700 Manihot esculenta HOM05D001964 ORTHO05D001879 1.8e-08 63.2 68 47.1
Nn1g04618 Nelumbo nucifera HOM05D001964 ORTHO05D001879 4.0e-08 62.0 47 55.3
FAN23G1983 Fragaria x ananassa HOM05D001964 ORTHO05D001879 8.9e-08 60.8 74 47.3
Dinv26903 Davidia involucrata HOM05D001964 ORTHO05D001879 1.5e-07 60.1 33 75.8
CiPaw.01G007300 Carya illinoinensis HOM05D001964 ORTHO05D001879 2.0e-07 59.7 75 42.7
FvH4_1g17230 Fragaria vesca HOM05D001964 ORTHO05D001879 2.6e-07 59.3 74 45.9
FAN26G0310 Fragaria x ananassa HOM05D001964 ORTHO05D001879 2.6e-07 59.3 32 78.1
Glyma.14G087600 Glycine max HOM05D001964 ORTHO05D001879 3.4e-07 58.9 85 38.8
Aqoxy6G02734 Aquilegia oxysepala HOM05D001964 ORTHO05D001879 4.4e-07 58.5 81 37.0
Ciclev10025613m.g Citrus clementina HOM05D001964 ORTHO05D001879 4.4e-07 58.5 50 52.0
FAN28G0877 Fragaria x ananassa HOM05D001964 ORTHO05D001879 4.4e-07 58.5 74 45.9
Sabra14G0012100 Salix brachista HOM05D001964 ORTHO05D001879 4.4e-07 58.5 85 36.5
Oeu040595.1 Olea europaea HOM05D001964 ORTHO05D001879 5.8e-07 58.2 33 72.7
Duzib116G0749 Durio zibethinus HOM05D001964 ORTHO05D001879 9.8e-07 57.4 39 59.0
FAN19G0344 Fragaria x ananassa HOM05D001964 ORTHO05D001879 9.8e-07 57.4 32 75.0
Lalb_Chr24g0399401 Lupinus albus HOM05D001964 ORTHO05D001879 1.7e-06 56.6 36 63.9
Actinidia38096 Actinidia chinensis HOM05D001964 ORTHO05D001879 2.2e-06 56.2 38 63.2
Haze_22305 Corylus avellana HOM05D001964 ORTHO05D001879 2.2e-06 56.2 73 43.8
Thecc.08G091600 Theobroma cacao HOM05D001964 ORTHO05D001879 2.2e-06 56.2 39 59.0
Atru.chr13.806 Acer truncatum HOM05D001964 ORTHO05D001879 2.9e-06 55.8 68 44.1
arahy.Tifrunner.gnm1.ann1.SNFJ12 Arachis hypogaea HOM05D001964 ORTHO05D001879 3.7e-06 55.5 62 41.9
Lj5g0004137 Lotus japonicus HOM05D001964 ORTHO05D001879 3.7e-06 55.5 39 59.0
Sabra02G0094500 Salix brachista HOM05D001964 ORTHO05D001879 3.7e-06 55.5 110 31.8
Lj4A68T48 Lonicera japonica HOM05D001964 ORTHO05D001879 4.9e-06 55.1 40 62.5
arahy.Tifrunner.gnm1.ann1.K697CU Arachis hypogaea HOM05D001964 ORTHO05D001879 6.4e-06 54.7 44 54.5
Glyma.17G236700 Glycine max HOM05D001964 ORTHO05D001879 6.4e-06 54.7 36 63.9
MELO3C007613.2 Cucumis melo HOM05D001964 ORTHO05D001879 8.3e-06 54.3 72 40.3
PSO675G7178 Papaver somniferum HOM05D001964 ORTHO05D001879 8.3e-06 54.3 79 32.9
Rhsim07G0221900 Rhododendron simsii HOM05D001964 ORTHO05D001879 8.3e-06 54.3 85 36.5


User provided reference genes

Program Settings