Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004459 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D110053 3.6e-35 151.0 74 100.0
CSS0034716 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D112718 1.2e-30 136.0 74 87.8
CSS0002514 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D109754 2.7e-30 134.8 74 87.8
CSS0016115 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D111458 7.8e-30 133.3 74 86.5
CSS0017076 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 6.6e-29 130.2 74 83.8
CSS0009047 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D109769 5.6e-28 127.1 74 83.8
CSS0040962 Camellia sinensis var. sinensis HOM05D000013 ORTHO05D000689 3.5e-14 81.3 70 54.3
CSS0046978 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 2.5e-12 75.1 81 48.1
CSS0012313 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D009868 3.3e-12 74.7 84 46.4
CSS0013605 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D009868 4.3e-12 74.3 84 45.2
CSS0017784 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 4.3e-12 74.3 84 44.0
CSS0017310 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 7.4e-12 73.6 84 45.2
CSS0001511 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 9.6e-12 73.2 84 44.0
CSS0009187 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 1.3e-11 72.8 84 45.2
Rhsim04G0061400 Rhododendron simsii HOM05D000038 ORTHO05D000689 1.3e-11 72.8 83 45.8
CSS0024661 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 1.6e-11 72.4 84 42.9
CSS0002283 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 2.1e-11 72.0 84 42.9
TWI18G0179 Tripterygium wilfordii HOM05D000038 ORTHO05D000689 2.1e-11 72.0 83 44.6
CSS0018809 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 1.1e-10 69.7 83 43.4
CSS0022261 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 3.1e-10 68.2 82 45.1
Rhsim04G0061000 Rhododendron simsii HOM05D000038 ORTHO05D000689 3.1e-10 68.2 84 42.9
CANSAT64G2175 Cannabis sativa HOM05D000038 ORTHO05D000689 4.0e-10 67.8 83 44.6
vmacro09304 Vaccinium macrocarpon HOM05D000038 ORTHO05D000689 5.3e-10 67.4 82 42.7
vmacro09303 Vaccinium macrocarpon HOM05D000038 ORTHO05D000689 6.9e-10 67.0 83 43.4
RhsimUnG0113300 Rhododendron simsii HOM05D000013 ORTHO05D000689 1.2e-09 66.2 84 44.0
CSS0025699 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 1.5e-09 65.9 83 42.2
CSS0050341 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 1.5e-09 65.9 83 42.2
Actinidia39295 Actinidia chinensis HOM05D000038 ORTHO05D000689 2.0e-09 65.5 83 39.8
Manes.13G076800 Manihot esculenta HOM05D000038 ORTHO05D000689 2.0e-09 65.5 83 43.4
Rhsim04G0059200 Rhododendron simsii HOM05D000013 ORTHO05D000689 2.0e-09 65.5 84 40.5
Rhsim04G0060400 Rhododendron simsii HOM05D000038 ORTHO05D000689 2.0e-09 65.5 84 40.5
RhsimUnG0197300 Rhododendron simsii HOM05D000038 ORTHO05D000689 2.0e-09 65.5 84 40.5
TWI75G1104 Tripterygium wilfordii HOM05D000038 ORTHO05D000689 2.0e-09 65.5 83 42.2
TWI75G1852 Tripterygium wilfordii HOM05D000038 ORTHO05D000689 2.0e-09 65.5 83 42.2
DCAR_012969 Daucus carota HOM05D000038 ORTHO05D000689 2.6e-09 65.1 83 39.8
TAR627G0471 Trochodendron aralioides HOM05D000038 ORTHO05D000689 2.6e-09 65.1 83 42.2
Hma1.2p1_1090F.1_g255780 Hydrangea macrophylla HOM05D000038 ORTHO05D000689 3.4e-09 64.7 83 42.2
RhsimUnG0131800 Rhododendron simsii HOM05D000038 ORTHO05D000689 3.4e-09 64.7 84 41.7
vmacro09301 Vaccinium macrocarpon HOM05D000038 ORTHO05D000689 3.4e-09 64.7 83 43.4
CSS0006040 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 5.8e-09 63.9 84 44.0
CSS0008527 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 5.8e-09 63.9 84 44.0
CSS0028873 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 7.6e-09 63.5 83 41.0
Rhsim04G0061200 Rhododendron simsii HOM05D000038 ORTHO05D000689 7.6e-09 63.5 84 41.7
CSS0039385 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 1.0e-08 63.2 84 44.0
CiPaw.03G166900 Carya illinoinensis HOM05D000038 ORTHO05D000689 1.0e-08 63.2 83 43.4
CiPaw.03G167200 Carya illinoinensis HOM05D000038 ORTHO05D000689 1.0e-08 63.2 83 43.4
Ciclev10014281m.g Citrus clementina HOM05D000038 ORTHO05D000689 1.0e-08 63.2 83 41.0
Eucgr.A01752 Eucalyptus grandis HOM05D000038 ORTHO05D000689 1.0e-08 63.2 83 41.0
DCAR_019201 Daucus carota HOM05D000038 ORTHO05D000689 1.3e-08 62.8 83 38.6
QL08p036241 Quercus lobata HOM05D000038 ORTHO05D000689 1.3e-08 62.8 83 41.0
TAR626G0246 Trochodendron aralioides HOM05D000038 ORTHO05D000689 1.3e-08 62.8 84 42.9
CSS0030882 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 1.7e-08 62.4 83 41.0
Lj3g0007077 Lotus japonicus HOM05D000038 ORTHO05D000689 1.7e-08 62.4 83 41.0
Rhsim04G0060200 Rhododendron simsii HOM05D000038 ORTHO05D000689 1.7e-08 62.4 84 40.5
CSS0028738 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 2.2e-08 62.0 83 38.6
Nn1g03819 Nelumbo nucifera HOM05D000038 ORTHO05D000689 2.2e-08 62.0 83 39.8
Rhsim04G0060500 Rhododendron simsii HOM05D000038 ORTHO05D000689 2.2e-08 62.0 84 40.5
Aqoxy5G03337 Aquilegia oxysepala HOM05D000038 ORTHO05D000689 2.9e-08 61.6 83 41.0
CSS0022758 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 2.9e-08 61.6 82 39.0
Eucgr.A01762 Eucalyptus grandis HOM05D000038 ORTHO05D000689 2.9e-08 61.6 83 39.8
Eucgr.A01764 Eucalyptus grandis HOM05D000038 ORTHO05D000689 2.9e-08 61.6 83 39.8
Eucgr.A01765 Eucalyptus grandis HOM05D000038 ORTHO05D000689 2.9e-08 61.6 83 39.8
Sc12g0002650 Simmondsia chinensis HOM05D000038 ORTHO05D000689 2.9e-08 61.6 83 39.8
Eucgr.E00499 Eucalyptus grandis HOM05D000038 ORTHO05D000689 3.8e-08 61.2 83 41.0
arahy.Tifrunner.gnm1.ann1.AUSP9T Arachis hypogaea HOM05D000038 ORTHO05D000689 4.9e-08 60.8 83 39.8
CSS0007750 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 4.9e-08 60.8 83 37.3
Nitab4.5_0000945g0010 Nicotiana tabacum HOM05D000038 ORTHO05D000689 4.9e-08 60.8 83 38.6
Ciclev10014278m.g Citrus clementina HOM05D000038 ORTHO05D000689 6.5e-08 60.5 83 39.8
Nn1g06833 Nelumbo nucifera HOM05D000038 ORTHO05D000689 6.5e-08 60.5 83 38.6
THA.LOC104798387 Tarenaya hassleriana HOM05D000038 ORTHO05D000689 6.5e-08 60.5 83 41.0
CiPaw.03G167100 Carya illinoinensis HOM05D000038 ORTHO05D000689 8.4e-08 60.1 83 43.4
Peaxi162Scf00007g00185 Petunia axillaris HOM05D000038 ORTHO05D000689 8.4e-08 60.1 83 37.3
Eucgr.K00400 Eucalyptus grandis HOM05D000038 ORTHO05D000689 1.1e-07 59.7 83 41.0
Nitab4.5_0010290g0010 Nicotiana tabacum HOM05D000038 ORTHO05D000689 1.1e-07 59.7 83 37.3
Solyc07g053220.2 Solanum lycopersicum HOM05D000038 ORTHO05D000689 1.1e-07 59.7 83 36.1
TAR627G0198 Trochodendron aralioides HOM05D000038 ORTHO05D000689 1.1e-07 59.7 83 38.6
CAN.G640.28 Capsicum annuum HOM05D000038 ORTHO05D000689 1.4e-07 59.3 83 36.1
Prupe.3G227500 Prunus persica HOM05D000038 ORTHO05D000689 1.4e-07 59.3 84 41.7
CiPaw.04G121500 Carya illinoinensis HOM05D000038 ORTHO05D000689 1.9e-07 58.9 83 38.6
AUR62033724 Chenopodium quinoa HOM05D000038 ORTHO05D000689 1.9e-07 58.9 83 36.1
Duzib132G0772 Durio zibethinus HOM05D000038 ORTHO05D000689 1.9e-07 58.9 83 38.6
Eucgr.E00507 Eucalyptus grandis HOM05D000038 ORTHO05D000689 1.9e-07 58.9 83 39.8
Sopen07g026780 Solanum pennellii HOM05D000038 ORTHO05D000689 1.9e-07 58.9 83 34.9
ClCG02G001430 Citrullus lanatus HOM05D000038 ORTHO05D000689 2.5e-07 58.5 83 42.2
Eucgr.E00508 Eucalyptus grandis HOM05D000038 ORTHO05D000689 2.5e-07 58.5 83 39.8
Potri.013G121000 Populus trichocarpa HOM05D000038 ORTHO05D000689 2.5e-07 58.5 84 40.5
Potri.013G149500 Populus trichocarpa HOM05D000038 ORTHO05D000689 2.5e-07 58.5 84 40.5
PGR042G1332 Punica granatum HOM05D000038 ORTHO05D000689 2.5e-07 58.5 83 38.6
Gorai.008G151000 Gossypium raimondii HOM05D000038 ORTHO05D000689 3.2e-07 58.2 91 40.7
Phvul.005G110400 Phaseolus vulgaris HOM05D000038 ORTHO05D000689 3.2e-07 58.2 83 37.3
Potri.019G119200 Populus trichocarpa HOM05D000038 ORTHO05D000689 4.2e-07 57.8 84 40.5
PGR042G0040 Punica granatum HOM05D000038 ORTHO05D000689 4.2e-07 57.8 83 38.6
Sabra19G0119800 Salix brachista HOM05D000038 ORTHO05D009868 4.2e-07 57.8 101 39.6
Sabra19G0134200 Salix brachista HOM05D000038 ORTHO05D009868 4.2e-07 57.8 101 39.6
PGSC0003DMG400042814 Solanum tuberosum HOM05D000038 ORTHO05D000689 4.2e-07 57.8 83 34.9
Ca_01552_v3 Cicer arietinum L. HOM05D000038 ORTHO05D000689 7.1e-07 57.0 83 37.3
CsaV3_7G004020 Cucumis sativus L. HOM05D000038 ORTHO05D000689 7.1e-07 57.0 83 38.6
Eucgr.A01759 Eucalyptus grandis HOM05D000038 ORTHO05D000689 7.1e-07 57.0 83 38.6
Eucgr.L01774 Eucalyptus grandis HOM05D000038 ORTHO05D000689 7.1e-07 57.0 83 38.6
MBI02_g01119_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D000689 7.1e-07 57.0 83 38.6
Sabra19G0120000 Salix brachista HOM05D000038 ORTHO05D000689 7.1e-07 57.0 84 41.7
Sabra19G0134000 Salix brachista HOM05D000038 ORTHO05D000689 7.1e-07 57.0 84 41.7
EL10Ac9g20720 Beta vulgaris HOM05D000038 ORTHO05D000689 9.3e-07 56.6 83 36.1
Cc05_g05720 Coffea canephora HOM05D000038 ORTHO05D000689 9.3e-07 56.6 83 37.3
Eucgr.A01755 Eucalyptus grandis HOM05D000038 ORTHO05D000689 9.3e-07 56.6 83 38.6
Eucgr.F02500 Eucalyptus grandis HOM05D000038 ORTHO05D000689 9.3e-07 56.6 83 38.6
Glyma.12G104100 Glycine max HOM05D000038 ORTHO05D000689 9.3e-07 56.6 83 37.3
MBI02_g01123_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D009868 9.3e-07 56.6 83 39.8
PGR042G0775 Punica granatum HOM05D000038 ORTHO05D000689 9.3e-07 56.6 83 36.1
RcHm_v2.0_Chr2g0161191 Rosa chinensis HOM05D000038 ORTHO05D000689 9.3e-07 56.6 85 41.2
Thecc.02G167400 Theobroma cacao HOM05D000038 ORTHO05D000689 9.3e-07 56.6 83 38.6
Ca_01553_v3 Cicer arietinum L. HOM05D000038 ORTHO05D000689 1.2e-06 56.2 83 38.6
Ca_08325_v3 Cicer arietinum L. HOM05D000038 ORTHO05D000689 1.2e-06 56.2 83 38.6
Glyma.06G300600 Glycine max HOM05D000038 ORTHO05D000689 1.2e-06 56.2 83 37.3
Lj3g0010627 Lotus japonicus HOM05D000038 ORTHO05D000689 1.2e-06 56.2 83 36.1
MD17G1087200 Malus domestica HOM05D000038 ORTHO05D000689 1.2e-06 56.2 84 41.7
PSO541G1496 Papaver somniferum HOM05D000038 ORTHO05D000689 1.2e-06 56.2 84 34.5
PSO541G6007 Papaver somniferum HOM05D000038 ORTHO05D000689 1.2e-06 56.2 84 36.9
PSO675G5754 Papaver somniferum HOM05D000038 ORTHO05D000689 1.2e-06 56.2 84 34.5
PSO675G9226 Papaver somniferum HOM05D000038 ORTHO05D000689 1.2e-06 56.2 84 34.5
Prupe.3G227300 Prunus persica HOM05D000038 ORTHO05D000689 1.2e-06 56.2 84 39.3
Sc21g0002150 Simmondsia chinensis HOM05D000038 ORTHO05D000689 1.2e-06 56.2 83 33.7
HanXRQChr17g0559701 Helianthus annuus HOM05D000038 ORTHO05D000689 1.6e-06 55.8 83 36.1
arahy.Tifrunner.gnm1.ann1.D2YYPY Arachis hypogaea HOM05D000038 ORTHO05D000689 2.1e-06 55.5 83 34.9
arahy.Tifrunner.gnm1.ann1.M23BVA Arachis hypogaea HOM05D000038 ORTHO05D000689 2.1e-06 55.5 83 34.9
Ca_01551_v3 Cicer arietinum L. HOM05D000038 ORTHO05D000689 2.1e-06 55.5 83 37.3
HPP92_012370 Vanilla planifolia HOM05D000038 ORTHO05D000689 2.1e-06 55.5 83 34.9
VMungo1127G0525 Vigna mungo HOM05D000038 ORTHO05D000689 2.1e-06 55.5 83 37.3
CSS0028698 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D000689 2.7e-06 55.1 84 38.1
Oeu059071.3 Olea europaea HOM05D000013 ORTHO05D000689 2.7e-06 55.1 83 37.3
Psat7g202800 Pisum sativum HOM05D000038 ORTHO05D000689 2.7e-06 55.1 83 37.3
Haze_13038 Corylus avellana HOM05D000013 ORTHO05D000689 3.5e-06 54.7 83 41.0
Glyma.13G303400 Glycine max HOM05D000038 ORTHO05D000689 3.5e-06 54.7 82 36.6
Haze_13033 Corylus avellana HOM05D000038 ORTHO05D000689 4.6e-06 54.3 83 39.8
Eucgr.A01757 Eucalyptus grandis HOM05D000038 ORTHO05D000689 4.6e-06 54.3 83 38.6
FAN05G5313 Fragaria x ananassa HOM05D000038 ORTHO05D000689 4.6e-06 54.3 85 40.0
FAN09G0976 Fragaria x ananassa HOM05D000038 ORTHO05D000689 4.6e-06 54.3 85 40.0
Medtr2g089360 Medicago truncatula HOM05D000038 ORTHO05D000689 4.6e-06 54.3 83 36.1
Aqoxy5G03338 Aquilegia oxysepala HOM05D000038 ORTHO05D000689 6.0e-06 53.9 83 36.1
Duzib052G0031 Durio zibethinus HOM05D000038 ORTHO05D000689 6.0e-06 53.9 83 37.3
Lj3g0022501 Lotus japonicus HOM05D000038 ORTHO05D000689 6.0e-06 53.9 83 37.3
TAR624G1314 Trochodendron aralioides HOM05D000038 ORTHO05D000689 6.0e-06 53.9 83 36.1
ATR1132G110 Amborella trichopoda HOM05D000038 ORTHO05D000689 7.9e-06 53.5 83 41.0
MELO3C018777.2 Cucumis melo HOM05D000038 ORTHO05D000689 7.9e-06 53.5 83 37.3
Lj3g0020922 Lotus japonicus HOM05D000038 ORTHO05D000689 7.9e-06 53.5 83 37.3
MBI02_g01122_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D000689 7.9e-06 53.5 83 37.3
Phvul.011G109100 Phaseolus vulgaris HOM05D000038 ORTHO05D000689 7.9e-06 53.5 83 36.1
Psat5g267480 Pisum sativum HOM05D000038 ORTHO05D000689 7.9e-06 53.5 83 37.3


User provided reference genes

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