Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004424 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 2.2e-213 745.3 377 100.0
CSS0042161 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 9.1e-175 617.1 448 75.2
CSS0000615 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 3.7e-168 595.1 450 73.1
CSS0025340 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 3.1e-159 565.5 430 71.9
CSS0042776 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 3.1e-159 565.5 448 71.4
CSS0009574 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 3.0e-133 479.2 381 69.3
CSS0028826 Camellia sinensis var. sinensis HOM05D012808 ORTHO05D011705 3.9e-117 425.6 412 60.0
vmacro00512 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 2.1e-14 84.3 137 29.2
RhsimUnG0200600 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.1e-13 82.0 176 27.8
Thecc.05G279300 Theobroma cacao HOM05D012808 ORTHO05D000006 1.1e-13 82.0 93 40.9
vmacro21269 Vaccinium macrocarpon HOM05D005003 ORTHO05D006220 6.8e-13 79.3 139 32.4
vmacro23283 Vaccinium macrocarpon HOM05D000163 ORTHO05D009356 8.9e-13 79.0 99 34.3
Rhsim13G0125400 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.5e-12 78.2 145 27.6
Rhsim09G0140400 Rhododendron simsii HOM05D008219 ORTHO05D009356 2.0e-12 77.8 97 38.1
Rhsim05G0075400 Rhododendron simsii HOM05D008219 ORTHO05D009356 2.6e-12 77.4 145 27.6
RhsimUnG0101100 Rhododendron simsii HOM05D008219 ORTHO05D009356 2.6e-12 77.4 177 28.2
Actinidia26692 Actinidia chinensis HOM05D008219 ORTHO05D009356 5.8e-12 76.3 121 30.6
Rhsim07G0230400 Rhododendron simsii HOM05D008219 ORTHO05D009356 9.9e-12 75.5 97 36.1
vmacro01896 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 9.9e-12 75.5 202 25.7
Sc15g0001330 Simmondsia chinensis HOM05D009209 ORTHO05D011705 2.9e-11 73.9 95 36.8
vmacro12106 Vaccinium macrocarpon HOM05D000081 ORTHO05D009356 3.8e-11 73.6 104 33.7
vmacro21928 Vaccinium macrocarpon HOM05D000086 ORTHO05D000431 8.4e-11 72.4 94 35.1
vmacro21908 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 1.9e-10 71.2 96 33.3
Sc15g0003580 Simmondsia chinensis HOM05D009209 ORTHO05D011705 7.1e-10 69.3 143 31.5
Sc17g0002300 Simmondsia chinensis HOM05D009209 ORTHO05D011705 7.1e-10 69.3 111 33.3
Actinidia11343 Actinidia chinensis HOM05D019814 ORTHO05D009356 9.2e-10 68.9 89 39.3
Sc11g0007070 Simmondsia chinensis HOM05D009209 ORTHO05D011705 1.2e-09 68.6 95 33.7
Rhsim04G0141400 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.6e-09 68.2 96 32.3
RhsimUnG0239600 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.6e-09 68.2 96 32.3
Actinidia12169 Actinidia chinensis HOM05D012898 ORTHO05D009356 2.1e-09 67.8 139 30.9
Actinidia34556 Actinidia chinensis HOM05D008219 ORTHO05D009356 2.1e-09 67.8 96 34.4
Lj4g0011576 Lotus japonicus HOM05D002777 ORTHO05D001516 2.1e-09 67.8 120 30.0
Rhsim11G0150800 Rhododendron simsii HOM05D012808 ORTHO05D009356 2.1e-09 67.8 94 31.9
arahy.Tifrunner.gnm1.ann1.2029P5 Arachis hypogaea HOM05D012808 ORTHO05D011705 2.7e-09 67.4 113 32.7
Rhsim11G0140400 Rhododendron simsii HOM05D000026 ORTHO05D009356 2.7e-09 67.4 96 32.3
Sc17g0002350 Simmondsia chinensis HOM05D009209 ORTHO05D011705 2.7e-09 67.4 71 40.8
vmacro06592 Vaccinium macrocarpon HOM05D000211 ORTHO05D002285 3.5e-09 67.0 103 30.1
Sc21g0001740 Simmondsia chinensis HOM05D011136 ORTHO05D010856 6.0e-09 66.2 102 37.3
vmacro10949 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 6.0e-09 66.2 125 31.2
Rhsim04G0090900 Rhododendron simsii HOM05D008219 ORTHO05D009356 7.8e-09 65.9 218 26.1
Sc07g0002530 Simmondsia chinensis HOM05D011136 ORTHO05D010856 7.8e-09 65.9 99 30.3
EL10Ac2g04522 Beta vulgaris HOM05D008976 ORTHO05D011121 1.3e-08 65.1 116 37.9
Lj2g0018575 Lotus japonicus HOM05D002777 ORTHO05D001516 1.3e-08 65.1 170 26.5
TPR.G14641 Trifolium pratense HOM05D002777 ORTHO05D001516 3.0e-08 63.9 101 29.7
vmacro22723 Vaccinium macrocarpon HOM05D005228 ORTHO05D006208 3.9e-08 63.5 72 36.1
EL10Ac9g21786 Beta vulgaris HOM05D008976 ORTHO05D011121 6.6e-08 62.8 179 26.3
Rhsim07G0052100 Rhododendron simsii HOM05D008219 ORTHO05D009356 6.6e-08 62.8 57 47.4
Sc03g0004550 Simmondsia chinensis HOM05D009209 ORTHO05D011705 8.6e-08 62.4 70 35.7
EL10Ac7g16632 Beta vulgaris HOM05D008976 ORTHO05D011121 1.1e-07 62.0 115 31.3
TPR.G27496 Trifolium pratense HOM05D000003 ORTHO05D000004 1.1e-07 62.0 71 38.0
Phvul.001G161800 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 1.5e-07 61.6 167 24.0
Rhsim02G0177400 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.5e-07 61.6 84 29.8
Sc02g0007350 Simmondsia chinensis HOM05D011136 ORTHO05D010856 1.5e-07 61.6 100 31.0
Sc03g0004450 Simmondsia chinensis HOM05D009209 ORTHO05D011705 1.5e-07 61.6 95 32.6
EL10Ac6g15678 Beta vulgaris HOM05D008976 ORTHO05D011121 1.9e-07 61.2 117 34.2
EL10Ac5g10790 Beta vulgaris HOM05D008976 ORTHO05D011121 2.5e-07 60.8 138 33.3
Phvul.001G088300 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 2.5e-07 60.8 141 25.5
EL10Ac7g17991 Beta vulgaris HOM05D008976 ORTHO05D011121 3.3e-07 60.5 119 31.9
Medtr5g065250 Medicago truncatula HOM05D002777 ORTHO05D001516 3.3e-07 60.5 96 32.3
Rhsim02G0045800 Rhododendron simsii HOM05D008219 ORTHO05D009356 3.3e-07 60.5 57 43.9
Medtr2g103400 Medicago truncatula HOM05D002777 ORTHO05D001516 4.3e-07 60.1 96 31.2
Sc10g0010640 Simmondsia chinensis HOM05D011136 ORTHO05D010856 5.6e-07 59.7 102 29.4
EL10Ac4g09899 Beta vulgaris HOM05D008976 ORTHO05D011121 7.3e-07 59.3 133 30.8
EL10Ac5g12917 Beta vulgaris HOM05D008976 ORTHO05D011121 9.6e-07 58.9 115 33.0
EL10Ac6g13580 Beta vulgaris HOM05D008976 ORTHO05D011121 9.6e-07 58.9 115 33.0
LjContig00357g0023212 Lotus japonicus HOM05D002777 ORTHO05D001516 9.6e-07 58.9 123 26.0
Phvul.002G142300 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 9.6e-07 58.9 141 25.5
EL10Ac1g02070 Beta vulgaris HOM05D008976 ORTHO05D011121 1.2e-06 58.5 87 37.9
Gohir.A06G194460 Gossypium hirsutum HOM05D000003 ORTHO05D015081 1.2e-06 58.5 95 25.3
Sc14g0002520 Simmondsia chinensis HOM05D009209 ORTHO05D011705 1.6e-06 58.2 88 33.0
CSS0042955 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D009356 2.1e-06 57.8 69 42.0
Phvul.011G176000 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 2.1e-06 57.8 141 25.5
Phvul.L001950 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 2.1e-06 57.8 139 26.6
Thecc.09G068100 Theobroma cacao HOM05D012808 ORTHO05D011121 2.1e-06 57.8 144 25.7
EL10Ac5g11650 Beta vulgaris HOM05D008976 ORTHO05D011121 2.8e-06 57.4 176 29.0
Phvul.001G154000 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 2.8e-06 57.4 202 24.8
Phvul.007G107000 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 2.8e-06 57.4 99 30.3
EL10Ac1g01107 Beta vulgaris HOM05D008976 ORTHO05D011121 3.6e-06 57.0 94 35.1
Lj2g0011303 Lotus japonicus HOM05D002777 ORTHO05D001516 3.6e-06 57.0 84 34.5
Phvul.010G077150 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 3.6e-06 57.0 139 26.6
Phvul.010G016100 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 4.7e-06 56.6 130 28.5
Rhsim05G0113800 Rhododendron simsii HOM05D010265 ORTHO05D009356 4.7e-06 56.6 94 28.7
Lj4g0008907 Lotus japonicus HOM05D002777 ORTHO05D001516 6.2e-06 56.2 123 26.0
Sc06g0004220 Simmondsia chinensis HOM05D006933 ORTHO05D009629 6.2e-06 56.2 114 28.9
Lsat_1_v5_gn_3_28940 Lactuca sativa HOM05D003915 ORTHO05D005386 8.1e-06 55.8 95 35.8
Lsat_1_v5_gn_6_27160 Lactuca sativa HOM05D003915 ORTHO05D005386 8.1e-06 55.8 186 28.0
Sc21g0005420 Simmondsia chinensis HOM05D006933 ORTHO05D009629 8.1e-06 55.8 88 34.1


User provided reference genes

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