Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 1.6e-250 869.0 458 100.0
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 5.1e-220 767.7 449 88.9
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 1.7e-212 742.7 449 86.2
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 2.4e-209 732.3 441 86.6
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 3.1e-209 731.9 448 85.0
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 4.5e-208 728.0 441 85.9
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 5.8e-208 727.6 441 85.9
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 5.4e-206 721.1 449 83.5
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 1.2e-205 719.9 451 82.0
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 1.6e-205 719.5 462 83.8
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 3.5e-205 718.4 449 81.1
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 1.3e-204 716.5 441 84.4
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 5.6e-203 711.1 445 82.2
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 9.6e-203 710.3 447 82.8
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 1.6e-202 709.5 436 84.9
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 2.0e-200 702.6 447 81.2
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 1.7e-199 699.5 448 81.7
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 3.8e-199 698.4 453 81.5
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 6.4e-199 697.6 428 85.0
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 1.1e-198 696.8 441 82.8
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 2.4e-198 695.7 446 82.5
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 4.2e-198 694.9 438 82.4
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 9.3e-198 693.7 448 81.0
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 7.9e-197 690.6 449 78.8
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 1.0e-196 690.3 453 80.1
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 1.3e-196 689.9 449 80.2
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 1.8e-196 689.5 449 80.2
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 5.1e-196 688.0 448 78.6
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 5.1e-196 688.0 449 80.6
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 6.7e-196 687.6 445 79.8
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 1.1e-195 686.8 450 78.4
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 1.9e-195 686.0 450 78.9
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 2.5e-195 685.6 451 80.7
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 2.5e-195 685.6 451 80.9
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 2.5e-195 685.6 445 80.4
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 3.3e-195 685.3 448 80.4
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 4.3e-195 684.9 445 80.9
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 7.4e-195 684.1 448 79.2
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 9.6e-195 683.7 451 80.3
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 1.3e-194 683.3 458 78.4
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 2.1e-194 682.6 445 79.3
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 3.7e-194 681.8 432 81.9
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 3.7e-194 681.8 479 76.2
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 4.8e-194 681.4 452 78.5
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 1.1e-193 680.2 441 81.2
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 3.1e-193 678.7 441 79.1
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 5.3e-193 677.9 441 81.2
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 6.9e-193 677.6 429 83.7
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 1.2e-192 676.8 443 77.9
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 1.5e-192 676.4 457 78.1
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 2.6e-192 675.6 409 85.8
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 4.5e-192 674.9 434 80.2
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 5.8e-192 674.5 444 80.0
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 1.3e-191 673.3 444 78.8
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 1.3e-191 673.3 449 78.2
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 1.3e-191 673.3 452 78.8
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 2.2e-191 672.5 480 76.7
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 4.9e-191 671.4 447 78.7
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 6.5e-191 671.0 441 79.1
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 1.1e-190 670.2 452 78.5
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 3.2e-190 668.7 450 77.3
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 5.5e-190 667.9 448 77.9
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 5.5e-190 667.9 452 77.0
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 7.1e-190 667.5 450 77.3
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 9.3e-190 667.2 452 77.2
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 1.6e-189 666.4 447 78.7
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 4.6e-189 664.8 448 77.9
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 1.0e-188 663.7 445 77.5
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 3.0e-188 662.1 457 77.0
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 3.0e-188 662.1 444 77.9
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 3.9e-188 661.8 444 76.8
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 1.1e-187 660.2 448 77.5
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 1.5e-187 659.8 456 77.6
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 4.3e-187 658.3 448 77.2
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 9.6e-187 657.1 448 76.6
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 1.3e-186 656.8 448 76.6
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 1.3e-186 656.8 448 76.3
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 2.1e-186 656.0 438 79.2
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 4.8e-186 654.8 448 76.1
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 4.8e-186 654.8 448 76.6
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 6.3e-186 654.4 448 75.9
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 8.2e-186 654.1 448 76.1
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 1.8e-185 652.9 448 76.1
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 2.4e-185 652.5 449 75.3
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 4.1e-185 651.7 450 76.2
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 5.3e-185 651.4 448 76.3
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 3.4e-184 648.7 448 76.3
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 4.5e-184 648.3 531 68.2
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 1.3e-183 646.7 448 76.3
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 1.3e-183 646.7 448 76.1
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 1.8e-180 636.3 474 71.5
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 2.2e-178 629.4 399 83.0
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 5.3e-177 624.8 414 80.9
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 3.4e-176 622.1 444 72.5
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 4.2e-174 615.1 406 79.1
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 3.9e-172 608.6 396 81.1
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 8.8e-172 607.4 422 73.5
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 2.8e-170 602.4 409 78.2
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 3.6e-165 585.5 424 71.9
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 1.5e-163 580.1 397 77.3
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 2.0e-163 579.7 389 80.5
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 3.3e-163 578.9 405 76.8
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 2.6e-160 569.3 441 69.4
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 2.9e-159 565.8 451 72.3
HPP92_001489 Vanilla planifolia HOM05D004269 ORTHO05D007106 2.9e-159 565.8 386 74.9
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 2.3e-156 556.2 423 68.8
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 1.8e-148 530.0 324 88.0
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 6.6e-135 485.0 442 58.4
AagrBONN_evm.TU.Sc2ySwM_228.5429 Anthoceros agrestis HOM05D004269 ORTHO05D007106 1.4e-132 477.2 360 70.3
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 3.4e-131 472.6 389 68.6
Zm00001eb012670 Zea mays HOM05D004269 ORTHO05D007106 1.3e-127 460.7 329 70.8
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 3.7e-122 442.6 310 76.8
PRCOL_00001324 Prasinoderma coloniale HOM05D004269 ORTHO05D007106 2.4e-121 439.9 437 56.8
MCO14G482 Micromonas commoda HOM05D004269 ORTHO05D007106 7.8e-120 434.9 435 56.8
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 9.9e-115 417.9 253 87.4
SHI29092 Sapria himalayana HOM05D004269 ORTHO05D007106 1.5e-102 377.5 386 57.5
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 3.5e-96 356.3 221 86.9
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 1.7e-95 354.0 210 89.5
Actinidia13127 Actinidia chinensis HOM05D004269 ORTHO05D007106 2.2e-90 337.0 202 86.1
Hma1.2p1_1535F.1_g289480 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 6.0e-88 328.9 195 86.7
Hma1.2p1_1004F.1_g246860 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 5.5e-81 305.8 204 78.9
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 6.9e-68 262.3 182 81.3
CBR_g37471 Chara braunii HOM05D004269 ORTHO05D007106 9.0e-68 261.9 218 63.8
VMungo0720G1280 Vigna mungo HOM05D004269 ORTHO05D007106 1.8e-60 237.7 147 79.6
Cfa024613 Carpinus fangiana HOM05D004269 ORTHO05D007106 5.7e-54 216.1 456 36.4
SEGI_16124 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 1.2e-48 198.4 124 78.2
Lsat_1_v5_gn_4_171201 Lactuca sativa HOM05D004269 ORTHO05D000661 1.8e-36 157.9 264 40.9
SEGI_30751 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 3.1e-36 157.1 140 62.1
SEGI_32622 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 4.1e-36 156.8 137 63.5
Cc02_g24250 Coffea canephora HOM05D004269 ORTHO05D007106 2.0e-35 154.5 103 78.6
Lsat_1_v5_gn_7_20760 Lactuca sativa HOM05D004269 ORTHO05D020149 8.5e-34 149.1 154 60.4
Potri.015G112400 Populus trichocarpa HOM05D004269 ORTHO05D007106 8.5e-34 149.1 119 66.4
Lsat_1_v5_gn_6_110780 Lactuca sativa HOM05D004269 ORTHO05D000661 1.1e-33 148.7 264 39.0
SEGI_12229 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 2.8e-29 134.0 99 72.7
QL09p013305 Quercus lobata HOM05D004269 ORTHO05D010618 3.7e-29 133.7 101 72.3
Cfa017427 Carpinus fangiana HOM05D004269 ORTHO05D021565 2.1e-24 117.9 79 74.7
Lsat_1_v5_gn_1_18180 Lactuca sativa HOM05D000819 ORTHO05D000661 7.5e-22 109.4 121 56.2
SalBow6G0271 Salvia bowleyana HOM05D004269 ORTHO05D000571 2.0e-19 101.3 87 62.1
Lsat_1_v5_gn_1_104560 Lactuca sativa HOM05D001098 ORTHO05D003515 1.4e-15 88.6 46 80.4
Lsat_1_v5_gn_9_124300 Lactuca sativa HOM05D001098 ORTHO05D003515 1.4e-15 88.6 46 80.4
AUR62004247 Chenopodium quinoa HOM05D004269 ORTHO05D021565 2.3e-15 87.8 71 62.0
AUR62035732 Chenopodium quinoa HOM05D004269 ORTHO05D021565 2.3e-15 87.8 71 62.0
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 1.2e-14 85.5 78 59.0
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 7.5e-14 82.8 110 47.3
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 2.2e-13 81.3 110 46.4
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 2.2e-13 81.3 110 46.4
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 2.2e-13 81.3 110 46.4
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 2.9e-13 80.9 110 46.4
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 2.9e-13 80.9 110 46.4
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 2.9e-13 80.9 108 46.3
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 2.9e-13 80.9 110 46.4
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 2.9e-13 80.9 110 46.4
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 3.7e-13 80.5 110 45.5
Sabra15G0134100 Salix brachista HOM05D004269 ORTHO05D007106 3.7e-13 80.5 91 54.9
BcaB08g34435 Brassica carinata HOM05D004269 ORTHO05D000659 4.9e-13 80.1 61 60.7
ECA236G0058 Erigeron canadensis HOM05D000039 ORTHO05D000370 2.4e-12 77.8 64 65.6
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 7.0e-12 76.3 80 53.8
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 7.0e-12 76.3 63 63.5
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 2.0e-11 74.7 112 45.5
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 6.0e-11 73.2 166 36.1
COL.COLO4_35964 Corchorus olitorius HOM05D001211 ORTHO05D001084 3.0e-10 70.9 76 55.3
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 3.9e-10 70.5 176 33.0
AUR62005065 Chenopodium quinoa HOM05D018411 ORTHO05D021565 1.1e-07 62.4 58 56.9
CARHR249580 Cardamine hirsuta HOM05D004269 ORTHO05D021565 1.8e-07 61.6 57 57.9
BcaC04g20716 Brassica carinata HOM05D004269 ORTHO05D013520 3.1e-07 60.8 45 68.9
CAN.G1327.6 Capsicum annuum HOM05D004269 ORTHO05D007861 5.2e-07 60.1 48 68.8
BcaC07g37638 Brassica carinata HOM05D004269 ORTHO05D016737 8.9e-07 59.3 39 71.8
Lsat_1_v5_gn_3_20180 Lactuca sativa HOM05D000819 ORTHO05D000661 2.0e-06 58.2 121 38.8
C06p14100 Brassica napus HOM05D004269 ORTHO05D013520 5.8e-06 56.6 46 63.0
Glyma.18G131800 Glycine max HOM05D004269 ORTHO05D213362 5.8e-06 56.6 69 46.4
BcaB08g35223 Brassica carinata HOM05D004269 ORTHO05D016737 9.8e-06 55.8 38 68.4


User provided reference genes

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