Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004418 Camellia sinensis var. sinensis HOM05D001690 ORTHO05D002627 2.0e-36 155.2 75 100.0
CSS0043491 Camellia sinensis var. sinensis HOM05D001690 ORTHO05D002627 8.0e-22 106.7 53 100.0
Hma1.2p1_0375F.1_g139080 Hydrangea macrophylla HOM05D001690 ORTHO05D002627 2.5e-15 85.1 51 76.5
Actinidia33972 Actinidia chinensis HOM05D001690 ORTHO05D002627 3.2e-15 84.7 52 76.9
Peaxi162Scf00129g00826 Petunia axillaris HOM05D001690 ORTHO05D002627 9.4e-15 83.2 53 69.8
Lj7A409G61 Lonicera japonica HOM05D001690 ORTHO05D002627 2.1e-14 82.0 51 74.5
Rhsim08G0061200 Rhododendron simsii HOM05D001690 ORTHO05D002627 6.1e-14 80.5 49 77.6
DCAR_013958 Daucus carota HOM05D001690 ORTHO05D002627 1.4e-13 79.3 51 74.5
Peaxi162Scf00368g00117 Petunia axillaris HOM05D001690 ORTHO05D002627 1.4e-13 79.3 53 69.8
PGR083G2406 Punica granatum HOM05D001690 ORTHO05D002627 1.4e-13 79.3 51 76.5
Rhsim08G0056900 Rhododendron simsii HOM05D001690 ORTHO05D002627 1.4e-13 79.3 49 75.5
MSTRG.23987 Avicennia marina HOM05D001690 ORTHO05D002627 1.8e-13 79.0 53 66.0
ECA232G0267 Erigeron canadensis HOM05D001690 ORTHO05D002627 3.0e-13 78.2 51 72.5
Solyc02g087130.4 Solanum lycopersicum HOM05D001690 ORTHO05D002627 4.0e-13 77.8 52 67.3
Sopen02g031880 Solanum pennellii HOM05D001690 ORTHO05D002627 4.0e-13 77.8 52 67.3
TAR371G0464 Trochodendron aralioides HOM05D001690 ORTHO05D002627 4.0e-13 77.8 51 72.5
Cc07_g02530 Coffea canephora HOM05D001690 ORTHO05D002627 5.2e-13 77.4 53 64.2
Lsat_1_v5_gn_4_181900 Lactuca sativa HOM05D001690 ORTHO05D002627 5.2e-13 77.4 51 72.5
HanXRQChr09g0266021 Helianthus annuus HOM05D001690 ORTHO05D002627 8.8e-13 76.6 51 70.6
QL02p077697 Quercus lobata HOM05D001690 ORTHO05D002627 8.8e-13 76.6 50 76.0
Migut.K01362 Erythranthe guttata HOM05D001690 ORTHO05D002627 1.2e-12 76.3 53 64.2
Ciclev10012229m.g Citrus clementina HOM05D001690 ORTHO05D002627 1.5e-12 75.9 50 68.0
Eucgr.J02177 Eucalyptus grandis HOM05D001690 ORTHO05D002627 2.0e-12 75.5 51 70.6
Lsat_1_v5_gn_2_92740 Lactuca sativa HOM05D001690 ORTHO05D002627 2.0e-12 75.5 51 70.6
Solyc02g087140.3 Solanum lycopersicum HOM05D001690 ORTHO05D002627 2.0e-12 75.5 51 68.6
Sopen02g031890 Solanum pennellii HOM05D001690 ORTHO05D002627 2.0e-12 75.5 51 68.6
Nitab4.5_0001952g0180 Nicotiana tabacum HOM05D001690 ORTHO05D002627 2.6e-12 75.1 53 64.2
Nitab4.5_0005206g0030 Nicotiana tabacum HOM05D001690 ORTHO05D002627 2.6e-12 75.1 53 64.2
Lalb_Chr02g0159771 Lupinus albus HOM05D001690 ORTHO05D002627 9.7e-12 73.2 50 70.0
MD09G1038000 Malus domestica HOM05D001690 ORTHO05D002627 1.3e-11 72.8 49 71.4
HanXRQChr12g0385551 Helianthus annuus HOM05D001690 ORTHO05D002627 2.8e-11 71.6 51 66.7
Ca_22778_v3 Cicer arietinum L. HOM05D001690 ORTHO05D002627 3.7e-11 71.2 51 66.7
Lj4g0014493 Lotus japonicus HOM05D001690 ORTHO05D002627 3.7e-11 71.2 50 68.0
Sed0025692 Sechium edule HOM05D001690 ORTHO05D002627 4.8e-11 70.9 50 68.0
Eucgr.I01834 Eucalyptus grandis HOM05D001690 ORTHO05D002627 1.1e-10 69.7 49 65.3
VMungo0251G3618 Vigna mungo HOM05D001690 ORTHO05D002627 1.4e-10 69.3 50 68.0
Lalb_Chr05g0228001 Lupinus albus HOM05D001690 ORTHO05D002627 1.8e-10 68.9 50 66.0
MELO3C009928.2 Cucumis melo HOM05D001690 ORTHO05D002627 4.1e-10 67.8 50 68.0
Prupe.1G259600 Prunus persica HOM05D001690 ORTHO05D002627 4.1e-10 67.8 49 69.4
Prupe.3G280000 Prunus persica HOM05D001690 ORTHO05D002627 4.1e-10 67.8 49 63.3
RcHm_v2.0_Chr2g0170591 Rosa chinensis HOM05D001690 ORTHO05D002627 4.1e-10 67.8 49 65.3
CANSAT64G0713 Cannabis sativa HOM05D001690 ORTHO05D002627 5.3e-10 67.4 53 62.3
CANSAT64G2730 Cannabis sativa HOM05D001690 ORTHO05D002627 5.3e-10 67.4 53 62.3
Psat4g126440 Pisum sativum HOM05D001690 ORTHO05D002627 7.0e-10 67.0 47 70.2
THA.LOC104821068 Tarenaya hassleriana HOM05D001690 ORTHO05D002627 7.0e-10 67.0 49 63.3
FvH4_6g50271 Fragaria vesca HOM05D001690 ORTHO05D002627 9.1e-10 66.6 49 67.3
Lsat_1_v5_gn_8_22320 Lactuca sativa HOM05D001690 ORTHO05D002627 9.1e-10 66.6 42 76.2
MD17G1039000 Malus domestica HOM05D001690 ORTHO05D002627 9.1e-10 66.6 49 65.3
Nn3g16975 Nelumbo nucifera HOM05D001690 ORTHO05D002627 1.2e-09 66.2 49 71.4
Phvul.003G055000 Phaseolus vulgaris HOM05D001690 ORTHO05D002627 1.2e-09 66.2 49 67.3
Oeu031512.1 Olea europaea HOM05D001690 ORTHO05D002627 1.6e-09 65.9 54 61.1
Oeu031513.1 Olea europaea HOM05D001690 ORTHO05D002627 1.6e-09 65.9 54 61.1
CDE02G3381 Ceratophyllum demersum HOM05D001690 ORTHO05D002627 2.0e-09 65.5 49 67.3
PSO063G4956 Papaver somniferum HOM05D001690 ORTHO05D002627 2.7e-09 65.1 50 62.0
PSO832G0532 Papaver somniferum HOM05D001690 ORTHO05D002627 2.7e-09 65.1 50 62.0
EL10Ac2g03377 Beta vulgaris HOM05D001690 ORTHO05D002627 3.5e-09 64.7 49 67.3
ECA232G0979 Erigeron canadensis HOM05D001690 ORTHO05D002627 3.5e-09 64.7 51 58.8
PSO063G6989 Papaver somniferum HOM05D001690 ORTHO05D002627 3.5e-09 64.7 46 67.4
GSVIVG01032526001 Vitis vinifera HOM05D001690 ORTHO05D002627 3.5e-09 64.7 49 67.3
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 5.9e-09 63.9 42 71.4
FvH4_2g39271 Fragaria vesca HOM05D001690 ORTHO05D002627 5.9e-09 63.9 51 58.8
Nitab4.5_0001727g0070 Nicotiana tabacum HOM05D001690 ORTHO05D002627 5.9e-09 63.9 38 76.3
TPR.G2321 Trifolium pratense HOM05D001690 ORTHO05D002627 5.9e-09 63.9 51 58.8
Aa31LG11G14600 Aethionema arabicum HOM05D001690 ORTHO05D002627 7.7e-09 63.5 47 68.1
Aqoxy3G03078 Aquilegia oxysepala HOM05D001690 ORTHO05D002627 7.7e-09 63.5 51 60.8
CsaV3_3G042080 Cucumis sativus L. HOM05D001690 ORTHO05D002627 7.7e-09 63.5 50 64.0
MD16G1087400 Malus domestica HOM05D001690 ORTHO05D002627 7.7e-09 63.5 49 65.3
CARHR075560 Cardamine hirsuta HOM05D001690 ORTHO05D002627 1.0e-08 63.2 45 66.7
Thhalv10021278m.g Eutrema salsugineum HOM05D001690 ORTHO05D002627 1.7e-08 62.4 47 61.7
Gorai.009G350100 Gossypium raimondii HOM05D001690 ORTHO05D002627 1.7e-08 62.4 49 59.2
Psat4g126200 Pisum sativum HOM05D001690 ORTHO05D002627 1.7e-08 62.4 47 68.1
Sp3g00650 Schrenkiella parvula HOM05D001690 ORTHO05D002627 1.7e-08 62.4 47 61.7
RcHm_v2.0_Chr4g0444511 Rosa chinensis HOM05D001690 ORTHO05D002627 2.2e-08 62.0 46 67.4
CANSAT78G0546 Cannabis sativa HOM05D001690 ORTHO05D002627 3.8e-08 61.2 50 60.0
Lj2g0005228 Lotus japonicus HOM05D001690 ORTHO05D002627 3.8e-08 61.2 47 57.4
arahy.Tifrunner.gnm1.ann1.REN86K Arachis hypogaea HOM05D001690 ORTHO05D002627 6.5e-08 60.5 51 56.9
arahy.Tifrunner.gnm1.ann1.XWU7PI Arachis hypogaea HOM05D001690 ORTHO05D002627 6.5e-08 60.5 51 56.9
BolC1t05954H Brassica oleracea HOM05D001690 ORTHO05D002627 6.5e-08 60.5 47 59.6
QL03p062472 Quercus lobata HOM05D001690 ORTHO05D002627 6.5e-08 60.5 51 56.9
arahy.Tifrunner.gnm1.ann1.AP71DE Arachis hypogaea HOM05D001690 ORTHO05D002627 8.5e-08 60.1 49 61.2
BcaB04g21416 Brassica carinata HOM05D001690 ORTHO05D002627 8.5e-08 60.1 47 59.6
BcaC09g47664 Brassica carinata HOM05D001690 ORTHO05D002627 8.5e-08 60.1 47 59.6
BNapus_Darmor_BZH_scaffold_133p00060 Brassica napus HOM05D001690 ORTHO05D002627 8.5e-08 60.1 47 59.6
BraA01t04662Z Brassica rapa HOM05D001690 ORTHO05D002627 8.5e-08 60.1 47 59.6
ClCG10G014490 Citrullus lanatus HOM05D001690 ORTHO05D002627 8.5e-08 60.1 50 58.0
MD15G1022000 Malus domestica HOM05D001690 ORTHO05D002627 8.5e-08 60.1 42 69.0
Oeu012249.2 Olea europaea HOM05D001690 ORTHO05D002627 8.5e-08 60.1 51 56.9
HPP92_027514 Vanilla planifolia HOM05D001690 ORTHO05D002627 1.1e-07 59.7 46 63.0
Atru.chr11.1965 Acer truncatum HOM05D001690 ORTHO05D002627 1.5e-07 59.3 46 67.4
ECA232G3051 Erigeron canadensis HOM05D001690 ORTHO05D002627 1.5e-07 59.3 49 59.2
Migut.H00152 Erythranthe guttata HOM05D001690 ORTHO05D002627 1.5e-07 59.3 49 59.2
GSVIVG01020170001 Vitis vinifera HOM05D001690 ORTHO05D002627 1.5e-07 59.3 47 63.8
FvH4_4g34981 Fragaria vesca HOM05D001690 ORTHO05D002627 1.9e-07 58.9 46 65.2
Rhsim12G0048800 Rhododendron simsii HOM05D001690 ORTHO05D002627 1.9e-07 58.9 47 61.7
Sed0027377 Sechium edule HOM05D001690 ORTHO05D002627 1.9e-07 58.9 44 65.9
AL3G10790 Arabidopsis lyrata HOM05D001690 ORTHO05D002627 2.5e-07 58.5 45 62.2
CDE05G3134 Ceratophyllum demersum HOM05D001690 ORTHO05D002627 2.5e-07 58.5 47 53.2
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 2.5e-07 58.5 38 73.7
Ah.10g033540 Amaranthus hybridus HOM05D001690 ORTHO05D002627 3.2e-07 58.2 43 67.4
Cc08_g11240 Coffea canephora HOM05D001690 ORTHO05D002627 3.2e-07 58.2 51 58.8
SGA_v2.0_scaffold87G27000 Striga asiatica HOM05D001690 ORTHO05D002627 3.2e-07 58.2 51 56.9
vmacro18229 Vaccinium macrocarpon HOM05D001690 ORTHO05D051542 3.2e-07 58.2 44 68.2
HPP92_022398 Vanilla planifolia HOM05D001690 ORTHO05D002627 3.2e-07 58.2 46 60.9
AT3G01410 Arabidopsis thaliana HOM05D001690 ORTHO05D002627 4.2e-07 57.8 47 55.3
Solyc04g005010.4 Solanum lycopersicum HOM05D001690 ORTHO05D002627 4.2e-07 57.8 51 54.9
Sopen04g001020 Solanum pennellii HOM05D001690 ORTHO05D002627 4.2e-07 57.8 51 54.9
CsaV3_5G025720 Cucumis sativus L. HOM05D001690 ORTHO05D002627 5.5e-07 57.4 47 57.4
Sed0007819 Sechium edule HOM05D001690 ORTHO05D002627 5.5e-07 57.4 47 59.6
TWI36G1443 Tripterygium wilfordii HOM05D001690 ORTHO05D002627 5.5e-07 57.4 47 59.6
AL3G10770 Arabidopsis lyrata HOM05D001690 ORTHO05D002627 7.2e-07 57.0 45 62.2
Duzib264G0133 Durio zibethinus HOM05D001690 ORTHO05D002627 7.2e-07 57.0 49 61.2
Oeu001658.1 Olea europaea HOM05D001690 ORTHO05D002627 7.2e-07 57.0 52 57.7
MELO3C002906.2 Cucumis melo HOM05D001690 ORTHO05D002627 9.4e-07 56.6 51 52.9
Oeu025444.1 Olea europaea HOM05D001690 ORTHO05D002627 9.4e-07 56.6 44 63.6
Oeu031634.1 Olea europaea HOM05D001690 ORTHO05D002627 9.4e-07 56.6 51 56.9
MSTRG.7875 Avicennia marina HOM05D001690 ORTHO05D002627 1.2e-06 56.2 51 54.9
RcHm_v2.0_Chr6g0301731 Rosa chinensis HOM05D001690 ORTHO05D002627 1.2e-06 56.2 49 57.1
Eucgr.B02559 Eucalyptus grandis HOM05D001690 ORTHO05D002627 1.6e-06 55.8 50 56.0
Actinidia08180 Actinidia chinensis HOM05D001690 ORTHO05D002627 2.1e-06 55.5 47 59.6
EL10Ac6g13730 Beta vulgaris HOM05D001690 ORTHO05D002627 2.1e-06 55.5 47 59.6
DCAR_031083 Daucus carota HOM05D001690 ORTHO05D002627 2.1e-06 55.5 61 55.7
ECA246G4654 Erigeron canadensis HOM05D001690 ORTHO05D002627 2.1e-06 55.5 40 67.5
Os10g0458700 Oryza sativa ssp. japonica HOM05D001690 ORTHO05D002627 2.1e-06 55.5 49 51.0
PGR119G1314 Punica granatum HOM05D001690 ORTHO05D009096 2.1e-06 55.5 50 60.0
PGSC0003DMG400001921 Solanum tuberosum HOM05D001690 ORTHO05D002627 2.1e-06 55.5 51 52.9
Cc11_g13600 Coffea canephora HOM05D001690 ORTHO05D002627 2.7e-06 55.1 46 56.5
ECA233G4649 Erigeron canadensis HOM05D001690 ORTHO05D002627 3.6e-06 54.7 42 64.3
Lsat_1_v5_gn_3_49101 Lactuca sativa HOM05D001690 ORTHO05D002627 3.6e-06 54.7 40 65.0
Nitab4.5_0000257g0250 Nicotiana tabacum HOM05D001690 ORTHO05D002627 3.6e-06 54.7 51 52.9
Peaxi162Scf00421g00712 Petunia axillaris HOM05D001690 ORTHO05D002627 3.6e-06 54.7 51 54.9
RcHm_v2.0_Chr6g0245201 Rosa chinensis HOM05D001690 ORTHO05D002627 3.6e-06 54.7 49 55.1
THA.LOC104824673 Tarenaya hassleriana HOM05D001690 ORTHO05D002627 3.6e-06 54.7 49 57.1
BraA03t12424Z Brassica rapa HOM05D001690 ORTHO05D002627 4.7e-06 54.3 47 59.6
Lsat_1_v5_gn_8_160200 Lactuca sativa HOM05D001690 ORTHO05D002627 4.7e-06 54.3 42 66.7
Os08g0177800 Oryza sativa ssp. japonica HOM05D001690 ORTHO05D002627 4.7e-06 54.3 49 57.1
vmacro01196 Vaccinium macrocarpon HOM05D001690 ORTHO05D002627 4.7e-06 54.3 57 52.6
A03p32550 Brassica napus HOM05D001690 ORTHO05D002627 6.1e-06 53.9 47 59.6
AUR62039405 Chenopodium quinoa HOM05D001690 ORTHO05D002627 6.1e-06 53.9 47 61.7
Thhalv10008082m.g Eutrema salsugineum HOM05D001690 ORTHO05D002627 6.1e-06 53.9 44 61.4
HanXRQChr12g0371331 Helianthus annuus HOM05D001690 ORTHO05D002627 6.1e-06 53.9 42 66.7
TPR.G2319 Trifolium pratense HOM05D001690 ORTHO05D002627 6.1e-06 53.9 49 51.0
C03p39630 Brassica napus HOM05D001690 ORTHO05D002627 8.0e-06 53.5 47 59.6
Lsat_1_v5_gn_6_74241 Lactuca sativa HOM05D001690 ORTHO05D002627 8.0e-06 53.5 32 78.1
Nitab4.5_0000031g0340 Nicotiana tabacum HOM05D001690 ORTHO05D002627 8.0e-06 53.5 51 51.0
Nitab4.5_0006492g0030 Nicotiana tabacum HOM05D001690 ORTHO05D002627 8.0e-06 53.5 51 51.0


User provided reference genes

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